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Whole exome and transcriptome sequencing of BPDCN

This data set contains whole exome and transcriptome data from 47 case with BPDCN. For exome data, bam files are provided (mapped against GRCh38), for transcriptome raw fastq-files (paired-end data).

Request Access

This policy is adjusted from the Example DAA template at, i.e.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the BPDCN Data Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: BPDCN Data Committee and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. The BPDCN Data Committee ( External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. XXXXX: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines ( ) and the Toronto Statement ( This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) ( ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) ( ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the BPDCN Data Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the BPDCN Data Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the BPDCN Data Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The BPDCN Data Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than the BPDCN Data Committee. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Germany and shall be subject to the exclusive jurisdiction of German courts. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for XXXXX Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset ‘Molecular landscape of blastic plasmacytoid dendritic cell neoplasm’ Names of other data producers/collaborators Axel Künstner ( Niklas Gebauer ( * Hauke Busch ( * Constitute the Data Access Committee Specific limitations on areas of research DUO:0000006 DUO:0000014 DUO:0000018 DUO:0000026 DUO:0000028 Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY The BPDCN Data producers and collaborators named in Appendix I intend to publish the results of their analysis of this dataset in a peer-reviewed journal and do not consider its deposition into public databases to be the equivalent of such publications. The data producers anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until peer-reviewed journal publication of the EGA study unless the BPDCN Data Committee has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with the BPDCN Data Committee.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006166 Other
ID File Type Size Located in
EGAF00006138468 fq.gz 7.0 GB
EGAF00006138469 fq.gz 7.4 GB
EGAF00006138470 fq.gz 8.9 GB
EGAF00006138471 fq.gz 9.1 GB
EGAF00006138472 fq.gz 7.8 GB
EGAF00006138473 fq.gz 8.1 GB
EGAF00006138474 bam 12.0 GB
EGAF00006138475 bam 10.2 GB
EGAF00006138476 bam 10.6 GB
EGAF00006138477 bam 14.8 GB
EGAF00006138478 fq.gz 7.9 GB
EGAF00006138479 fq.gz 8.2 GB
EGAF00006138480 fq.gz 8.0 GB
EGAF00006138481 fq.gz 8.1 GB
EGAF00006138482 bam 16.4 GB
EGAF00006138483 bam 15.7 GB
EGAF00006138484 bam 11.6 GB
EGAF00006138485 bam 3.9 GB
EGAF00006138486 bam 20.9 GB
EGAF00006138487 bam 10.9 GB
EGAF00006138488 bam 14.0 GB
EGAF00006138489 bam 8.3 GB
EGAF00006138490 bam 13.6 GB
EGAF00006138491 fq.gz 8.0 GB
EGAF00006138492 fq.gz 8.5 GB
EGAF00006138493 bam 18.0 GB
EGAF00006138494 fq.gz 6.5 GB
EGAF00006138495 fq.gz 6.8 GB
EGAF00006138496 fq.gz 7.7 GB
EGAF00006138497 fq.gz 8.0 GB
EGAF00006138498 fq.gz 7.8 GB
EGAF00006138499 fq.gz 8.1 GB
EGAF00006138500 fq.gz 7.6 GB
EGAF00006138501 fq.gz 7.8 GB
EGAF00006138502 fq.gz 8.0 GB
EGAF00006138503 fq.gz 8.3 GB
EGAF00006138504 fq.gz 13.8 GB
EGAF00006138505 fq.gz 14.5 GB
EGAF00006138506 fq.gz 7.9 GB
EGAF00006138507 fq.gz 8.6 GB
EGAF00006138508 fq.gz 6.8 GB
EGAF00006138509 fq.gz 6.9 GB
EGAF00006138510 fq.gz 9.4 GB
EGAF00006138511 fq.gz 9.8 GB
EGAF00006138512 fq.gz 8.8 GB
EGAF00006138513 fq.gz 9.1 GB
EGAF00006138514 bam 20.8 GB
EGAF00006138515 fq.gz 8.7 GB
EGAF00006138516 fq.gz 9.0 GB
EGAF00006138517 bam 13.5 GB
EGAF00006138518 fq.gz 9.6 GB
EGAF00006138519 fq.gz 9.9 GB
EGAF00006138520 bam 9.4 GB
EGAF00006138521 fq.gz 8.6 GB
EGAF00006138522 fq.gz 8.9 GB
EGAF00006138523 bam 19.8 GB
EGAF00006138524 bam 14.6 GB
EGAF00006138525 bam 12.4 GB
EGAF00006138526 bam 9.9 GB
EGAF00006138527 fq.gz 7.8 GB
EGAF00006138528 fq.gz 8.1 GB
EGAF00006138529 bam 12.9 GB
EGAF00006138530 bam 14.9 GB
EGAF00006138531 bam 13.6 GB
EGAF00006138532 bam 18.6 GB
EGAF00006138533 fq.gz 10.1 GB
EGAF00006138534 fq.gz 10.5 GB
EGAF00006138535 fq.gz 8.7 GB
EGAF00006138536 fq.gz 9.1 GB
EGAF00006138537 fq.gz 10.0 GB
EGAF00006138538 fq.gz 10.5 GB
EGAF00006138539 bam 20.7 GB
EGAF00006138540 bam 14.8 GB
EGAF00006138541 fq.gz 7.9 GB
EGAF00006138542 fq.gz 8.4 GB
EGAF00006138543 fq.gz 8.4 GB
EGAF00006138544 fq.gz 8.7 GB
EGAF00006138545 fq.gz 9.8 GB
EGAF00006138546 fq.gz 10.1 GB
EGAF00006138547 fq.gz 8.7 GB
EGAF00006138548 fq.gz 9.0 GB
EGAF00006138549 fq.gz 9.0 GB
EGAF00006138550 fq.gz 9.3 GB
EGAF00006138551 fq.gz 7.7 GB
EGAF00006138552 fq.gz 8.0 GB
EGAF00006138553 bam 9.6 GB
EGAF00006138554 bam 16.9 GB
EGAF00006138555 bam 13.8 GB
EGAF00006138556 bam 8.4 GB
EGAF00006138557 bam 19.4 GB
EGAF00006138558 bam 22.2 GB
EGAF00006138559 fq.gz 9.0 GB
EGAF00006138560 fq.gz 9.4 GB
EGAF00006138561 bam 20.5 GB
EGAF00006138562 fq.gz 7.4 GB
EGAF00006138563 fq.gz 7.7 GB
EGAF00006138564 fq.gz 9.0 GB
EGAF00006138565 fq.gz 9.4 GB
EGAF00006138566 bam 15.7 GB
EGAF00006138567 bam 19.5 GB
EGAF00006138568 fq.gz 9.1 GB
EGAF00006138569 fq.gz 9.5 GB
EGAF00006138570 bam 17.9 GB
EGAF00006138571 fq.gz 9.0 GB
EGAF00006138572 fq.gz 9.6 GB
EGAF00006138573 fq.gz 9.3 GB
EGAF00006138574 fq.gz 9.7 GB
EGAF00006138575 bam 17.9 GB
EGAF00006138576 fq.gz 7.8 GB
EGAF00006138577 fq.gz 8.2 GB
EGAF00006138578 bam 8.0 GB
EGAF00006138579 fq.gz 7.7 GB
EGAF00006138580 fq.gz 8.0 GB
EGAF00006138581 bam 18.7 GB
EGAF00006138582 bam 18.5 GB
EGAF00006138583 bam 15.5 GB
EGAF00006138584 bam 14.0 GB
EGAF00006138585 bam 15.1 GB
EGAF00006138586 bam 15.5 GB
EGAF00006138587 bam 14.8 GB
EGAF00006138588 fq.gz 7.8 GB
EGAF00006138589 fq.gz 8.0 GB
EGAF00006138590 fq.gz 8.0 GB
EGAF00006138591 fq.gz 8.1 GB
EGAF00006138592 fq.gz 9.2 GB
EGAF00006138593 fq.gz 9.4 GB
EGAF00006138594 fq.gz 8.3 GB
EGAF00006138595 fq.gz 8.5 GB
EGAF00006138596 fq.gz 17.6 GB
EGAF00006138597 fq.gz 18.3 GB
EGAF00006138598 fq.gz 7.9 GB
EGAF00006138599 fq.gz 8.2 GB
EGAF00006138600 fq.gz 7.4 GB
EGAF00006138601 fq.gz 7.7 GB
EGAF00006138602 bam 13.3 GB
EGAF00006138603 bam 14.4 GB
EGAF00006138604 bam 17.3 GB
EGAF00006138605 fq.gz 8.0 GB
EGAF00006138606 fq.gz 8.3 GB
EGAF00006138607 fq.gz 7.9 GB
EGAF00006138608 fq.gz 8.4 GB
EGAF00006138609 bam 17.6 GB
EGAF00006138610 fq.gz 7.6 GB
EGAF00006138611 fq.gz 7.9 GB
EGAF00006138775 bai 7.4 MB
EGAF00006138776 bai 7.6 MB
EGAF00006138777 bai 7.6 MB
EGAF00006138778 bai 7.4 MB
EGAF00006138779 bai 7.6 MB
EGAF00006138780 bai 7.5 MB
EGAF00006138781 bai 7.2 MB
EGAF00006138782 bai 7.2 MB
EGAF00006138783 bai 7.2 MB
EGAF00006138784 bai 7.8 MB
EGAF00006138787 bai 7.6 MB
EGAF00006138788 bai 7.3 MB
EGAF00006138789 bai 7.6 MB
EGAF00006138790 bai 7.2 MB
EGAF00006138791 bai 7.5 MB
EGAF00006138792 bai 7.4 MB
EGAF00006138793 bai 7.3 MB
EGAF00006138794 bai 7.9 MB
EGAF00006138795 bai 7.7 MB
EGAF00006138797 bai 7.4 MB
EGAF00006138798 bai 7.7 MB
EGAF00006138799 bai 7.3 MB
EGAF00006138800 bai 7.7 MB
EGAF00006138801 bai 7.4 MB
EGAF00006138802 bai 7.9 MB
EGAF00006138803 bai 7.6 MB
EGAF00006138804 bai 7.7 MB
EGAF00006138805 bai 7.4 MB
EGAF00006138807 bai 7.5 MB
EGAF00006138808 bai 7.6 MB
EGAF00006138809 bai 7.3 MB
EGAF00006138810 bai 7.7 MB
EGAF00006138811 bai 7.4 MB
EGAF00006138812 bai 8.0 MB
EGAF00006138813 bai 7.4 MB
EGAF00006138814 bai 7.5 MB
EGAF00006138816 bai 7.6 MB
EGAF00006138817 bai 7.5 MB
EGAF00006138818 bai 7.2 MB
EGAF00006138819 bai 7.5 MB
EGAF00006138820 bai 7.4 MB
EGAF00006138821 bai 8.0 MB
EGAF00006138822 bai 7.5 MB
EGAF00006138823 bai 7.6 MB
EGAF00006138824 bai 7.0 MB
EGAF00006138825 bai 7.4 MB
EGAF00006138827 bai 7.5 MB
EGAF00006138828 bai 7.5 MB
EGAF00006138829 bai 6.9 MB
EGAF00006138830 bai 7.6 MB
194 Files (1.6 TB)