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Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections

Advamced Visium Spatial Gene Expression assay for FFPE tissues with human and SARS-CoV-2 whole transcriptome (WT) information at a 55 µm resolution. The dataset consists of 13 tissue sections from 5 patient lung tissue samples, 3 from COVID-19 patients and 2 from control patients.

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DUO:0000004 (no restriction): This consent code primary category indicates there is no restriction on use.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006186 Other
  • Title and abstract updated as per manuscript's latest version.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006139836 fastq.gz 475.8 MB
EGAF00006139837 fastq.gz 698.4 MB
EGAF00006139838 fastq.gz 694.5 MB
EGAF00006139839 fastq.gz 1.0 GB
EGAF00006139840 fastq.gz 1.5 GB
EGAF00006139841 fastq.gz 2.1 GB
EGAF00006139842 fastq.gz 259.6 MB
EGAF00006139843 fastq.gz 385.6 MB
EGAF00006139844 fastq.gz 1.8 GB
EGAF00006139845 fastq.gz 2.5 GB
EGAF00006139846 fastq.gz 1.5 GB
EGAF00006139847 fastq.gz 2.1 GB
EGAF00006139848 fastq.gz 1.4 GB
EGAF00006139849 fastq.gz 2.1 GB
EGAF00006139850 fastq.gz 573.1 MB
EGAF00006139851 fastq.gz 829.5 MB
EGAF00006139852 fastq.gz 1.8 GB
EGAF00006139853 fastq.gz 2.5 GB
EGAF00006139854 fastq.gz 260.5 MB
EGAF00006139855 fastq.gz 387.5 MB
EGAF00006139856 fastq.gz 943.3 MB
EGAF00006139857 fastq.gz 1.3 GB
EGAF00006139858 fastq.gz 572.8 MB
EGAF00006139859 fastq.gz 832.8 MB
EGAF00006139860 fastq.gz 1.6 GB
EGAF00006139861 fastq.gz 2.5 GB
EGAF00006139862 fastq.gz 475.3 MB
EGAF00006139863 fastq.gz 696.4 MB
EGAF00006139864 fastq.gz 1.6 GB
EGAF00006139865 fastq.gz 2.5 GB
EGAF00006139866 fastq.gz 367.6 MB
EGAF00006139867 fastq.gz 543.9 MB
EGAF00006139868 fastq.gz 697.7 MB
EGAF00006139869 fastq.gz 1.0 GB
EGAF00006139870 fastq.gz 531.4 MB
EGAF00006139871 fastq.gz 776.6 MB
EGAF00006139872 fastq.gz 695.2 MB
EGAF00006139873 fastq.gz 1.0 GB
EGAF00006139874 fastq.gz 1.4 GB
EGAF00006139875 fastq.gz 2.1 GB
EGAF00006139876 fastq.gz 1.8 GB
EGAF00006139877 fastq.gz 2.5 GB
EGAF00006139878 fastq.gz 446.6 MB
EGAF00006139879 fastq.gz 641.8 MB
EGAF00006139880 fastq.gz 366.5 MB
EGAF00006139881 fastq.gz 542.6 MB
EGAF00006139882 fastq.gz 1.5 GB
EGAF00006139883 fastq.gz 2.1 GB
EGAF00006139884 fastq.gz 697.9 MB
EGAF00006139885 fastq.gz 1.0 GB
EGAF00006139886 fastq.gz 448.7 MB
EGAF00006139887 fastq.gz 647.6 MB
EGAF00006139888 fastq.gz 1.8 GB
EGAF00006139889 fastq.gz 2.4 GB
EGAF00006139890 fastq.gz 571.7 MB
EGAF00006139891 fastq.gz 830.7 MB
EGAF00006139892 fastq.gz 960.9 MB
EGAF00006139893 fastq.gz 1.3 GB
EGAF00006139894 fastq.gz 260.5 MB
EGAF00006139895 fastq.gz 386.3 MB
EGAF00006139896 fastq.gz 959.7 MB
EGAF00006139897 fastq.gz 1.3 GB
EGAF00006139898 fastq.gz 1.8 GB
EGAF00006139899 fastq.gz 2.4 GB
EGAF00006139900 fastq.gz 446.9 MB
EGAF00006139901 fastq.gz 645.3 MB
EGAF00006139902 fastq.gz 366.0 MB
EGAF00006139903 fastq.gz 542.2 MB
EGAF00006139904 fastq.gz 366.9 MB
EGAF00006139905 fastq.gz 544.4 MB
EGAF00006139906 fastq.gz 478.5 MB
EGAF00006139907 fastq.gz 700.3 MB
EGAF00006139908 fastq.gz 962.5 MB
EGAF00006139909 fastq.gz 1.3 GB
EGAF00006139910 fastq.gz 1.8 GB
EGAF00006139911 fastq.gz 2.4 GB
EGAF00006139912 fastq.gz 476.1 MB
EGAF00006139913 fastq.gz 697.2 MB
EGAF00006139914 fastq.gz 533.0 MB
EGAF00006139915 fastq.gz 778.8 MB
EGAF00006139916 fastq.gz 450.3 MB
EGAF00006139917 fastq.gz 649.0 MB
EGAF00006139918 fastq.gz 531.5 MB
EGAF00006139919 fastq.gz 778.0 MB
EGAF00006139920 fastq.gz 1.5 GB
EGAF00006139921 fastq.gz 2.1 GB
EGAF00006139922 fastq.gz 570.5 MB
EGAF00006139923 fastq.gz 827.7 MB
EGAF00006139924 fastq.gz 261.1 MB
EGAF00006139925 fastq.gz 387.3 MB
EGAF00006139926 fastq.gz 535.7 MB
EGAF00006139927 fastq.gz 782.0 MB
EGAF00006139928 fastq.gz 1.8 GB
EGAF00006139929 fastq.gz 2.5 GB
EGAF00006139930 fastq.gz 1.8 GB
EGAF00006139931 fastq.gz 2.4 GB
96 Files (105.9 GB)