About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections

Advamced Visium Spatial Gene Expression assay for FFPE tissues with human and SARS-CoV-2 whole transcriptome (WT) information at a 55 µm resolution. The dataset consists of 13 tissue sections from 5 patient lung tissue samples, 3 from COVID-19 patients and 2 from control patients.

Request Access

No restriction DUO label

DUO:0000004 (no restriction): This consent code primary category indicates there is no restriction on use.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006186 Other
  • Title and abstract updated as per manuscript's latest version.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00006139836 fastq.gz 475.8 MB Report
EGAF00006139837 fastq.gz 698.4 MB Report
EGAF00006139838 fastq.gz 694.5 MB Report
EGAF00006139839 fastq.gz 1.0 GB Report
EGAF00006139840 fastq.gz 1.5 GB Report
EGAF00006139841 fastq.gz 2.1 GB Report
EGAF00006139842 fastq.gz 259.6 MB Report
EGAF00006139843 fastq.gz 385.6 MB Report
EGAF00006139844 fastq.gz 1.8 GB Report
EGAF00006139845 fastq.gz 2.5 GB Report
EGAF00006139846 fastq.gz 1.5 GB Report
EGAF00006139847 fastq.gz 2.1 GB Report
EGAF00006139848 fastq.gz 1.4 GB Report
EGAF00006139849 fastq.gz 2.1 GB Report
EGAF00006139850 fastq.gz 573.1 MB Report
EGAF00006139851 fastq.gz 829.5 MB Report
EGAF00006139852 fastq.gz 1.8 GB Report
EGAF00006139853 fastq.gz 2.5 GB Report
EGAF00006139854 fastq.gz 260.5 MB Report
EGAF00006139855 fastq.gz 387.5 MB Report
EGAF00006139856 fastq.gz 943.3 MB Report
EGAF00006139857 fastq.gz 1.3 GB Report
EGAF00006139858 fastq.gz 572.8 MB Report
EGAF00006139859 fastq.gz 832.8 MB Report
EGAF00006139860 fastq.gz 1.6 GB Report
EGAF00006139861 fastq.gz 2.5 GB Report
EGAF00006139862 fastq.gz 475.3 MB Report
EGAF00006139863 fastq.gz 696.4 MB Report
EGAF00006139864 fastq.gz 1.6 GB Report
EGAF00006139865 fastq.gz 2.5 GB Report
EGAF00006139866 fastq.gz 367.6 MB Report
EGAF00006139867 fastq.gz 543.9 MB Report
EGAF00006139868 fastq.gz 697.7 MB Report
EGAF00006139869 fastq.gz 1.0 GB Report
EGAF00006139870 fastq.gz 531.4 MB Report
EGAF00006139871 fastq.gz 776.6 MB Report
EGAF00006139872 fastq.gz 695.2 MB Report
EGAF00006139873 fastq.gz 1.0 GB Report
EGAF00006139874 fastq.gz 1.4 GB Report
EGAF00006139875 fastq.gz 2.1 GB Report
EGAF00006139876 fastq.gz 1.8 GB Report
EGAF00006139877 fastq.gz 2.5 GB Report
EGAF00006139878 fastq.gz 446.6 MB Report
EGAF00006139879 fastq.gz 641.8 MB Report
EGAF00006139880 fastq.gz 366.5 MB Report
EGAF00006139881 fastq.gz 542.6 MB Report
EGAF00006139882 fastq.gz 1.5 GB Report
EGAF00006139883 fastq.gz 2.1 GB Report
EGAF00006139884 fastq.gz 697.9 MB Report
EGAF00006139885 fastq.gz 1.0 GB Report
EGAF00006139886 fastq.gz 448.7 MB Report
EGAF00006139887 fastq.gz 647.6 MB Report
EGAF00006139888 fastq.gz 1.8 GB Report
EGAF00006139889 fastq.gz 2.4 GB Report
EGAF00006139890 fastq.gz 571.7 MB Report
EGAF00006139891 fastq.gz 830.7 MB Report
EGAF00006139892 fastq.gz 960.9 MB Report
EGAF00006139893 fastq.gz 1.3 GB Report
EGAF00006139894 fastq.gz 260.5 MB Report
EGAF00006139895 fastq.gz 386.3 MB Report
EGAF00006139896 fastq.gz 959.7 MB Report
EGAF00006139897 fastq.gz 1.3 GB Report
EGAF00006139898 fastq.gz 1.8 GB Report
EGAF00006139899 fastq.gz 2.4 GB Report
EGAF00006139900 fastq.gz 446.9 MB Report
EGAF00006139901 fastq.gz 645.3 MB Report
EGAF00006139902 fastq.gz 366.0 MB Report
EGAF00006139903 fastq.gz 542.2 MB Report
EGAF00006139904 fastq.gz 366.9 MB Report
EGAF00006139905 fastq.gz 544.4 MB Report
EGAF00006139906 fastq.gz 478.5 MB Report
EGAF00006139907 fastq.gz 700.3 MB Report
EGAF00006139908 fastq.gz 962.5 MB Report
EGAF00006139909 fastq.gz 1.3 GB Report
EGAF00006139910 fastq.gz 1.8 GB Report
EGAF00006139911 fastq.gz 2.4 GB Report
EGAF00006139912 fastq.gz 476.1 MB Report
EGAF00006139913 fastq.gz 697.2 MB Report
EGAF00006139914 fastq.gz 533.0 MB Report
EGAF00006139915 fastq.gz 778.8 MB Report
EGAF00006139916 fastq.gz 450.3 MB Report
EGAF00006139917 fastq.gz 649.0 MB Report
EGAF00006139918 fastq.gz 531.5 MB Report
EGAF00006139919 fastq.gz 778.0 MB Report
EGAF00006139920 fastq.gz 1.5 GB Report
EGAF00006139921 fastq.gz 2.1 GB Report
EGAF00006139922 fastq.gz 570.5 MB Report
EGAF00006139923 fastq.gz 827.7 MB Report
EGAF00006139924 fastq.gz 261.1 MB Report
EGAF00006139925 fastq.gz 387.3 MB Report
EGAF00006139926 fastq.gz 535.7 MB Report
EGAF00006139927 fastq.gz 782.0 MB Report
EGAF00006139928 fastq.gz 1.8 GB Report
EGAF00006139929 fastq.gz 2.5 GB Report
EGAF00006139930 fastq.gz 1.8 GB Report
EGAF00006139931 fastq.gz 2.4 GB Report
96 Files (105.9 GB)