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WGBS of CD14 monocytes dataset of covid19 patients from Quebec, Canada

this dataset contains the raw data generated for CD14 monocytes WGBSof 7 covid19 hospitalized patients sampled at various time points (Admission, Day 5 and Day 15) in total 15 biospecimen are available. WGBS libraries have been sequenced on Illumina NovaSeq 6000.

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These data are under the McGill EMC data policy

These data are under the McGill EMC data policy (https://epigenomesportal.ca/edcc/data_access.html) Our data is available both from the EGA sequence archives. Raw sequence data (fastq files) are archived with the EGA. Access is available upon successful application to the DAC. Our EGA Study page reports datasets that can be obtained from the EGA following an application to the DAC. This list is accessible here: https://www.ebi.ac.uk/ega/studies/EGAS00001005468. Acknowledgment and citation We ask that all use of data, be acknowledged as follows in the methods section of manuscripts, if possible, or elsewhere in the main text of the manuscript: This research used data shared available from the European Genome-phenome Archive of the European Bioinformatics Institute (accession numbers: study EGAS00001005468 and dataset(s) EGAD00...). Please also cite the source of the data in any manuscript based on its analysis, as follows: A systems biology approach identifies candidate drugs to reduce mortality in severely ill COVID-19 patients, V.M. Fava, M. Bourgey, P.M. Nawarathna, M. Orlova, P. Cassart, D.C. Vinh, M.P. Cheng, G. Bourque, E. Schurr, D. Langlais

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005468 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006139766 fastq.gz 16.7 GB
EGAF00006139767 fastq.gz 17.2 GB
EGAF00006139768 fastq.gz 28.7 GB
EGAF00006139769 fastq.gz 29.6 GB
EGAF00006139770 fastq.gz 28.3 GB
EGAF00006139771 fastq.gz 29.2 GB
EGAF00006139772 fastq.gz 21.7 GB
EGAF00006139773 fastq.gz 22.3 GB
EGAF00006139774 fastq.gz 29.7 GB
EGAF00006139775 fastq.gz 30.3 GB
EGAF00006139776 fastq.gz 31.8 GB
EGAF00006139777 fastq.gz 32.7 GB
EGAF00006139778 fastq.gz 32.1 GB
EGAF00006139779 fastq.gz 33.0 GB
EGAF00006139780 fastq.gz 31.1 GB
EGAF00006139781 fastq.gz 32.0 GB
EGAF00006139782 fastq.gz 26.6 GB
EGAF00006139783 fastq.gz 27.4 GB
EGAF00006139784 fastq.gz 34.7 GB
EGAF00006139785 fastq.gz 36.8 GB
EGAF00006139786 fastq.gz 25.3 GB
EGAF00006139787 fastq.gz 26.1 GB
EGAF00006139788 fastq.gz 29.0 GB
EGAF00006139789 fastq.gz 29.9 GB
EGAF00006139790 fastq.gz 28.7 GB
EGAF00006139791 fastq.gz 29.6 GB
EGAF00006139792 fastq.gz 23.0 GB
EGAF00006139793 fastq.gz 23.6 GB
EGAF00006146778 fastq.gz 35.0 GB
EGAF00006146779 fastq.gz 37.3 GB
30 Files (859.1 GB)