Need Help?

MPM cell lines

RNA-sequencing data for 12 MPM cell lines treated with 0.1% DMSO or 1 µM palbociclib for 9-10 days. Experiment was performed in duplicates for sensitive cells (MPM08, MPM21, MPM38, MPM57, MPM59, Meso11, Meso13, Meso34 and Meso56) and only once for resistant cells (MPM31, MPM34 and MPM36) except for Meso11 which was done in triplicates. For Meso11, Meso13, Meso34 and Meso56, a drug washout of 48 hours was also performed. 4 MPM cell lines (MPM31, MPM34, MPM59 and MPM66) were also analyzed in untreated condition. 2 FASTQ files for each sample (n=56) (paired)

Request Access

Data Access Policy for MPM cell lines

Table of Content Section I: Contact and Project Information 3 Section II: harmonised Data Access Agreement (hDAA) 6 Terms and Conditions 7 Agreement 10 Appendix I 11 Appendix II 12   Section I: Contact and Project Information A. Data Recipient (including contact details) Please ensure that a full postal address and a valid Institutional email address are included Name: Institution’s Legal Name: Institutional Postal Address: Institutional E-mail Address: Website of the Institution: B. Authorised Representative of the Data Recipient Name: Position: Affiliation: Institutional Postal Address: Institutional E-mail Address: C. Data Controller(s) (including contact details) Please ensure that a full postal address and a valid Institutional email address are included Name: Université libre de Bruxelles Institution’s Legal Name: Université libre de Bruxelles Institutional Postal Address: 50 Avenue Franklin Roosevelt, 1050 Brussels, Belgium Institutional E-mail Address: ULBTTO@ulb.be Website of the Institution: www.ulb.be D. Authorised Representative of the Data Controller(s) Name: Daniele Carati Position: Director, ULB Research Administration Department Affiliation: Université libre de Bruxelles Institutional Postal Address: 50 Avenue Franklin Roosevelt CP161, 1050 Brussels, Belgium Institutional E-mail Address: ULBTTO@ulb.be E. Title of the Proposed Research Project F. Research Project (Scientific Abstract): Please provide a clear description of the Project, its stakeholders, its main question and its relevance to the research domain addressed, its specific aims, and duration. Note that any use of the Data, if approved, must fall under the framework of the described Project (300 words max): G. Research Credentials Please provide a list of three Publications, relevant to the Project description, of which the Data Recipient is author or co-author, and, also, attach their (Data Recipient’s) short CV. If the Data Recipient has not authored or co-authored three relevant Publications, please describe their relevant expertise or experience in no more than 150 words; also, notify how the research project will be carried out (e.g. available funding, infrastructure and so on). Section II: harmonised Data Access Agreement (hDAA) Definitions GDPR: This hDAA makes both parties compliant with the Regulation (EU) 2016/679 of the European Parliament and of the Council, that is, the General Data Protection Regulation (herein referred to as the ‘GDPR’). Data: Refers to controlled access data (the Data). Under this Agreement, the Data is pseudonymised. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve them from the Data Controller’s Institution upon approval of this hDAA by the corresponding DAC within the Data Controller’s Institution. Data Handling: Refers to an Institution’s ability to analyse and manipulate the Data within its own computer network. Data Controller(s): Refers to an Institution, responsible for the generation of the Data. Data Subject: Refers to any individual who is the source of any Data covered by this Agreement. Data Recipient (‘You’): Refers to the Institution who requests Access to the Data through this Agreement. Authorised Personnel: The individual(s) at the Institution requesting Access to the Data and any other individuals for whom the Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Research Project: The Project for which You have requested Access to the Data. Publications: Refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters, and other written and verbal presentations of Research that have been accepted by peer review. EU-STANDS4PM: This hDAA was developed by the EU-STANDS4PM, http://www/eu-stands4pm.eu/   Terms and Conditions In signing this Agreement: 1. You, the Data Recipient, agree to only use the Data for the Purpose of the Project. You further agree to only use the Data for Research Purposes which are within the limitations set out in Appendix I. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to identify Data Subjects. 4. You and your Authorised Personnel agree to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 5. You agree that in handling this Data You will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 6. You acknowledge that Access to the Data is granted for the duration of the Project described in Section I, as well as any new Project under the same research field or area. Any use of the Data for a Project of another research field or area will need to be approved under a new Agreement. 7. You recognize that nothing in this Agreement shall operate to transfer to You any intellectual property rights to the Data. 8. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block Access to, or use of, any element of the Data. 9. You can elect to perform further Research that would add intellectual and resource capital to the Data, and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further Research, following the Organisation for Economic Co-operation and Development Guidelines. 10. You agree that the Research Project 1) bears no legal responsibility for the accuracy or comprehensiveness of the Data; 2) accepts no liability for indirect, consequential, or incidental damages or losses arising from use of the Data; and 3) bears no responsibility for the further analysis or interpretation of these Data over and above that published by the Controller(s). 11. You agree to hold the Data Subject(s) and Data Controller(s) harmless and to defend and indemnify all these parties against all liabilities, demands, damages, expenses, and losses arising out of Your use for any Purpose of the Data. 12. You agree to a moratorium on publishing global analyses of the dataset until the Data Controller(s) have published their own global analysis or twelve (12) months, the maximum, have passed from the time the Data were deposited, whichever occurs first. You acknowledge that prompt publication or public disclosure of the results of the Research Project is encouraged. You also agree that by publishing Your global analyses of the Data, you will not disclose any results generated from the Data. 13. You agree to acknowledge the contribution of the Data Controller(s) in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. In any publications based on the Data, please describe how the Data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession number (e.g., EGAS00001006117). 14. You agree to use the Data in Your laboratory. Any Authorised Personnel shall work under Your direct supervision. You agree to distribute a copy of these terms to the Authorised Personnel. 15. You may not transfer any information included in the Data to anyone unless specifically designated in the Research Project, or by prior specific or general written authorisation of the Data Controller(s) responsible for the generation of the original Data in each case. 16. You may not transfer the Data itself to anyone outside the Institution, unless the Controller(s) has (have) approved such transfer and its terms in writing. 17. Should You wish to share the Data with an external collaborator, the external collaborator must complete a separate Data Access Agreement. 18. You shall ensure that ‘all’ who have Access to the Data, namely You and Your Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. You remain solely and fully responsible for Your Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 19. In case of a breach of security resulting from ‘accidental’ use of Data by You and Your Authorised Personnel, which leads to disclosure of Data, then You must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 20. In case of a ‘non-accidental or minor’ breach of hDAA by You You will further be required to destroy any Data held. 21. You accept that this Agreement will terminate immediately upon ‘any’ breach by You, or its termination (see Section I). 22. You endeavour to settle any dispute with the Data Controller(s) amicably. If you are unable to reach an Agreement, you will meet and negotiate in good faith in an effort to resolve the issue. If the issue has not been resolved within a reasonable period (e.g. 30 calendar days), you are both entitled to submit it for resolution by an arbitrator. 23. Further, the language of the proceedings will be ‘English’ if not otherwise agreed. The award of the arbitration will be final and binding upon the parties concerned. Agreement I have read, understood and agree to abide by the terms and conditions stipulated in this Data Access Agreement. Data Recipient or Authorised Representative of the Data Recipient: Name: Title and position: Affiliation: Signature: _____________________________________Date: _____________________ In the presence of: Name: Title: Principal Investigator Signature: _____________________________________ Date:______________________ Data Controller(s) or Authorised Representative of the Data Controller(s): Name: Daniele Carati Title and position (if applicable): Director, Research Admin. Dept. Affiliation (if applicable): Université libre de Bruxelles Signature: _____________________________________Date: ______________________   APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) EGAS00001006117, EGAD00001008741 Name of project that created the dataset Preclinical evaluation of CDK4 phosphorylation predicts high sensitivity of malignant pleural mesotheliomas to CDK4/6 inhibition Names of other data producers/collaborators - Centre de Recherche des Cordeliers, Inserm, Sorbonne Université, Université de Paris, Functional Genomics of Solid Tumors, Paris, France. - Nantes Université, Inserm, CNRS, Université d'Angers, CRCI2NA, Nantes - France Specific limitations on areas of research - general research use - not for profit, non-commercial use only - health or medical or biomedical research - project specific restriction APPENDIX II – AUTHORISED PERSONNEL (to be completed by the Data Recipient) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006117 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006135349 fastq.gz 1.1 GB
EGAF00006135350 fastq.gz 1.1 GB
EGAF00006135437 fastq.gz 1.7 GB
EGAF00006135438 fastq.gz 1.8 GB
EGAF00006135439 fastq.gz 1.5 GB
EGAF00006135440 fastq.gz 1.5 GB
EGAF00006135441 fastq.gz 1.5 GB
EGAF00006135442 fastq.gz 1.5 GB
EGAF00006135443 fastq.gz 1.3 GB
EGAF00006135444 fastq.gz 1.3 GB
EGAF00006135445 fastq.gz 1.2 GB
EGAF00006135446 fastq.gz 1.3 GB
EGAF00006135447 fastq.gz 1.5 GB
EGAF00006135448 fastq.gz 1.6 GB
EGAF00006135449 fastq.gz 1.4 GB
EGAF00006135450 fastq.gz 1.4 GB
EGAF00006135451 fastq.gz 1.4 GB
EGAF00006135452 fastq.gz 1.4 GB
EGAF00006135457 fastq.gz 908.4 MB
EGAF00006135458 fastq.gz 932.5 MB
EGAF00006135459 fastq.gz 1.5 GB
EGAF00006135460 fastq.gz 1.5 GB
EGAF00006135461 fastq.gz 1.3 GB
EGAF00006135462 fastq.gz 1.3 GB
EGAF00006135463 fastq.gz 1.3 GB
EGAF00006135464 fastq.gz 1.3 GB
EGAF00006135465 fastq.gz 1.3 GB
EGAF00006135466 fastq.gz 1.4 GB
EGAF00006135467 fastq.gz 1.3 GB
EGAF00006135468 fastq.gz 1.3 GB
EGAF00006135469 fastq.gz 1.5 GB
EGAF00006135470 fastq.gz 1.6 GB
EGAF00006135471 fastq.gz 1.5 GB
EGAF00006135472 fastq.gz 1.6 GB
EGAF00006135473 fastq.gz 1.4 GB
EGAF00006135474 fastq.gz 1.4 GB
EGAF00006135475 fastq.gz 1.4 GB
EGAF00006135476 fastq.gz 1.5 GB
EGAF00006135477 fastq.gz 1.9 GB
EGAF00006135478 fastq.gz 2.0 GB
EGAF00006135479 fastq.gz 1.6 GB
EGAF00006135480 fastq.gz 1.6 GB
EGAF00006135481 fastq.gz 1.5 GB
EGAF00006135482 fastq.gz 1.6 GB
EGAF00006135483 fastq.gz 1.3 GB
EGAF00006135484 fastq.gz 1.4 GB
EGAF00006135485 fastq.gz 1.3 GB
EGAF00006135486 fastq.gz 1.4 GB
EGAF00006135487 fastq.gz 1.6 GB
EGAF00006135488 fastq.gz 1.7 GB
EGAF00006135489 fastq.gz 1.3 GB
EGAF00006135490 fastq.gz 1.4 GB
EGAF00006135491 fastq.gz 1.6 GB
EGAF00006135492 fastq.gz 1.7 GB
EGAF00006135493 fastq.gz 1.7 GB
EGAF00006135494 fastq.gz 1.8 GB
EGAF00006135495 fastq.gz 1.5 GB
EGAF00006135496 fastq.gz 1.6 GB
EGAF00006135497 fastq.gz 1.3 GB
EGAF00006135498 fastq.gz 1.3 GB
EGAF00006135499 fastq.gz 1.9 GB
EGAF00006135500 fastq.gz 2.0 GB
EGAF00006135501 fastq.gz 2.7 GB
EGAF00006135502 fastq.gz 2.8 GB
EGAF00006135503 fastq.gz 2.4 GB
EGAF00006135504 fastq.gz 2.5 GB
EGAF00006135505 fastq.gz 2.2 GB
EGAF00006135506 fastq.gz 2.3 GB
EGAF00006135507 fastq.gz 2.1 GB
EGAF00006135508 fastq.gz 2.2 GB
EGAF00006135509 fastq.gz 3.5 GB
EGAF00006135510 fastq.gz 3.6 GB
EGAF00006135511 fastq.gz 2.4 GB
EGAF00006135512 fastq.gz 2.5 GB
EGAF00006135513 fastq.gz 2.3 GB
EGAF00006135514 fastq.gz 2.4 GB
EGAF00006135515 fastq.gz 2.0 GB
EGAF00006135516 fastq.gz 2.1 GB
EGAF00006135517 fastq.gz 2.0 GB
EGAF00006135518 fastq.gz 2.1 GB
EGAF00006135519 fastq.gz 2.2 GB
EGAF00006135520 fastq.gz 2.3 GB
EGAF00006135521 fastq.gz 2.2 GB
EGAF00006135522 fastq.gz 2.3 GB
EGAF00006135523 fastq.gz 2.7 GB
EGAF00006135524 fastq.gz 3.0 GB
EGAF00006135525 fastq.gz 2.0 GB
EGAF00006135526 fastq.gz 2.1 GB
EGAF00006135527 fastq.gz 2.3 GB
EGAF00006135528 fastq.gz 2.5 GB
EGAF00006135529 fastq.gz 2.1 GB
EGAF00006135530 fastq.gz 2.2 GB
EGAF00006135531 fastq.gz 2.1 GB
EGAF00006135532 fastq.gz 2.3 GB
EGAF00006135533 fastq.gz 2.6 GB
EGAF00006135534 fastq.gz 2.7 GB
EGAF00006135535 fastq.gz 2.1 GB
EGAF00006135536 fastq.gz 2.3 GB
EGAF00006135537 fastq.gz 2.1 GB
EGAF00006135538 fastq.gz 2.2 GB
EGAF00006135539 fastq.gz 2.1 GB
EGAF00006135540 fastq.gz 2.2 GB
EGAF00006135541 fastq.gz 2.2 GB
EGAF00006135542 fastq.gz 2.3 GB
EGAF00006135543 fastq.gz 2.5 GB
EGAF00006135544 fastq.gz 2.6 GB
EGAF00006135545 fastq.gz 2.6 GB
EGAF00006135546 fastq.gz 2.7 GB
EGAF00006135547 fastq.gz 1.5 GB
EGAF00006135548 fastq.gz 1.6 GB
EGAF00006135549 fastq.gz 2.5 GB
EGAF00006135550 fastq.gz 2.7 GB
112 Files (208.7 GB)