Summary Statistics GWAS SSNS

Dataset ID Technology Samples
EGAD00001008782 N/A 1

Dataset Description

Column 1 “rsid”: SNP identifier
Column 2 “chromosome”: name of chromosome on which the SNP is located
Column 3: “position”: base pair position on the chromosome
Column 4 “minor_test_allele”: the base that constitutes the minor allele
Column 5 “major_allele”: the base that constitutes the major allele
Column 6 “maf”: the frequency of the minor allele, indicated as a fraction of 1
Column 7 “allele_freq_cases”: the minor allele frequency in cases
Column 8 “allele_freq_controls”: the minor allele frequency in controls
Column 9 “regression_pvalue”: the p-value for the difference in allele frequency between cases and controls
Column 10 “odds_ratio”: the odds ratio, as calculated using logistic regression under an additive model with adjustment for the first ten principal components of ancestry

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Contact person: Professor Robert Kleta
Email: r [dot] kleta [at] ucl [dot] ac [dot] uk
More details: EGAC00001001177


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