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Dataset for upper_gastrointestinal_tumor-WHOLE_GENOME

Rare cancer sequencing data of 28 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired

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DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004338 Cancer Genomics
EGAS00001004813 Other
EGAS00001005145 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00004454593 bam 143.3 GB Report
EGAF00004454634 bam 149.2 GB Report
EGAF00004721724 bam 154.9 GB Report
EGAF00004721729 bam 154.8 GB Report
EGAF00004842229 bam 169.9 GB Report
EGAF00004842232 bam 169.4 GB Report
EGAF00004842237 bam 143.5 GB Report
EGAF00004842240 bam 140.2 GB Report
EGAF00004915666 bam 910.5 MB Report
EGAF00005299746 bam 147.0 GB Report
EGAF00005299753 bam 168.0 GB Report
EGAF00005323559 bam 139.5 GB Report
EGAF00005323567 bam 141.7 GB Report
EGAF00005397018 bam 137.6 GB Report
EGAF00005397038 bam 152.6 GB Report
EGAF00005444057 bam 151.0 GB Report
EGAF00005444066 bam 173.9 GB Report
EGAF00005466406 bam 157.6 GB Report
EGAF00005466433 bam 155.8 GB Report
EGAF00006067960 fastq.gz 31.7 GB Report
EGAF00006067961 fastq.gz 37.3 GB Report
EGAF00006067962 fastq.gz 24.9 GB Report
EGAF00006067963 fastq.gz 29.0 GB Report
EGAF00006068024 fastq.gz 40.0 GB Report
EGAF00006068025 fastq.gz 45.5 GB Report
EGAF00006068026 fastq.gz 39.9 GB Report
EGAF00006068027 fastq.gz 45.4 GB Report
EGAF00006068028 fastq.gz 35.0 GB Report
EGAF00006068029 fastq.gz 42.3 GB Report
EGAF00006160642 fastq.gz 37.4 GB Report
EGAF00006160643 fastq.gz 43.6 GB Report
EGAF00006160672 fastq.gz 36.8 GB Report
EGAF00006160673 fastq.gz 42.6 GB Report
EGAF00006167246 txt 159 Bytes
34 Files (3.3 TB)