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Genotype data for The admixture histories of Cabo Verde - genotype data

Datasets used in the article "The genetic and linguistic admixture histories of the islands of Cabo Verde" by Laurent R et al. eLife 2023 (DOI: https://doi.org/10.7554/eLife.79827 - URL: https://elifesciences.org/articles/79827) As per Materials and Methods herein, the genotype data corresponds to 2,118,722 autosomal SNPs genotyped from the IlluminaOmni 2.5 Million BeadChip for 233 Cabo Verdean volunteer participants, family unrelated at the 2nd degree based on population genetics analyses (see Material and Methods). SNP rsID, Chromosome position and genetic position in (bp) are in Build GRCh38. Cabo Verdean individuals are designated with an alphanumeric unique code

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The Data Access Committee for acess to genotype, linguistic, and sample information used in the article "The genetic and linguistic admixture histories of the islands of Cabo Verde" by Laurent R et al. eLife 2023 (DOI: https://doi.org/10.7554/eLife.79827 - URL: https://elifesciences.org/articles/79827) ensures that data-access requests comply with the Informed Consent provided by donors, and with ethical and deontological guidelines with respect to privacy. Research sampling protocols followed the Declaration of Helsinki guidelines and the French laws of scientific research deontology (Loi n° 2016-483 du 20 avril 2016). Research and ethics authorizations were provided by the Ministério da Saúde de Cabo Verde (228/DGS/11), Stanford University IRB (Protocol ID n°23194–IRB n°349), University of Michigan IRB (n°HUM00079335), and the French ethics committees and CNIL (Declaration n°1972648). All volunteer participants provided written and video-recorded informed consent.

Research sampling protocols followed the Declaration of Helsinki guidelines and the French laws of scientific research deontology (Loi n° 2016-483 du 20 avril 2016). Research and ethics authorizations were provided by the Ministério da Saúde de Cabo Verde (228/DGS/11), Stanford University IRB (Protocol ID n°23194–IRB n°349), University of Michigan IRB (n°HUM00079335), and the French ethics committees and CNIL (Declaration n°1972648). All volunteer participants provided written and video-recorded informed consent. Requests for accessing all or part of the data used in the article "The genetic and linguistic admixture histories of the islands of Cabo Verde" by Laurent R et al. eLife 2023 (DOI: https://doi.org/10.7554/eLife.79827 - URL: https://elifesciences.org/articles/79827), should be addressed to the DAC providing: 1) The research institution where data will be stored and were analyses will be conducted. 2) The detailed coordinates of the researcher responsible for data storage and analyses. 3) A description (max 20 sentences) of the scientific finality and context of the project and classes of methodological analyses that will be performed to achieve it using the requested data. 4) When applicable, mention also other previously published data sets that will be used jointly with the requested dataset For accessing any or all the genetic, linguistic and/or anthropological data used in the article "The genetic and linguistic admixture histories of the islands of Cabo Verde" by Laurent R et al. eLife 2023 (DOI: https://doi.org/10.7554/eLife.79827 - URL: https://elifesciences.org/articles/79827), the requester hereby ensures that: 1) Individual donor privacy should be respected at all times. Data cannot be made publicly available under any circumstances. 2) Data cannot be shared nor transferred to a third party without re-applying for eGA access to the DAC. 3) No direct or indirect commercial use of the data can be made 4) No individual medical genetics or disease diagnostics can be performed with the data 5) No medical or legal forensic investigations can be conducted with the data 6) No identifying genealogical research can be conducted with the data (e.g. no paternity nor maternity testing, no genetic identification, no search of relatives using other datasets) 7) Appropriate citation of the article and data set used for any scientific communication using the data 8) Data is destroyed after the completion of the project. Any further re-use of the data is subject to a novel application to the DAC.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006348 Population Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006214379 vcf 2.1 GB
1 File (2.1 GB)