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Triple negative breast cancer matched patient and pdx dataset

PDX aCGH (txt), WES (fastq) and RNASeq (fastq) samples from mice treated with cisplatin. Primary samples and matched pdx samples from multiple passages. Models from the Marie Curie Instute (HBCx1, HBCx4B, HBCx8, HBCx10, HBCx12B, HBCx14, HBCx15, HBCx16, HBCx17, HBCx23, HBCx24, HBCx27, HBCx28, HBCx30, HBCx31, HBCx33, HBCx39, HBCx40, HBCx43, HBCx51, HBCx63, HBCx66, HBCx92, HBCx106) and the NKI (T127, T162, T241, T250, T283, T302, T336).

Request Access

NKI Data Access Policy

To request access to the TNBCpdx datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to the Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the Data Access Committee reserves the right to withhold granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006393 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006419146 fastq.gz 2.0 GB
EGAF00006419147 fastq.gz 2.1 GB
EGAF00006419148 fastq.gz 1.9 GB
EGAF00006419149 fastq.gz 1.9 GB
EGAF00006419150 fastq.gz 2.3 GB
EGAF00006419151 fastq.gz 2.3 GB
EGAF00006419152 fastq.gz 2.8 GB
EGAF00006419153 fastq.gz 2.8 GB
EGAF00006419154 fastq.gz 2.7 GB
EGAF00006419155 fastq.gz 2.7 GB
EGAF00006419156 fastq.gz 3.2 GB
EGAF00006419157 fastq.gz 3.2 GB
EGAF00006419158 fastq.gz 5.6 GB
EGAF00006419159 fastq.gz 6.0 GB
EGAF00006419160 fastq.gz 751.9 MB
EGAF00006419161 fastq.gz 734.8 MB
EGAF00006419162 fastq.gz 762.3 MB
EGAF00006419163 fastq.gz 753.9 MB
EGAF00006419164 fastq.gz 848.7 MB
EGAF00006419165 fastq.gz 843.7 MB
EGAF00006419166 fastq.gz 771.0 MB
EGAF00006419167 fastq.gz 749.4 MB
EGAF00006419168 fastq.gz 765.2 MB
EGAF00006419169 fastq.gz 742.9 MB
EGAF00006419170 fastq.gz 717.7 MB
EGAF00006419171 fastq.gz 702.5 MB
EGAF00006419172 fastq.gz 493.2 MB
EGAF00006419173 fastq.gz 479.3 MB
EGAF00006419174 fastq.gz 490.1 MB
EGAF00006419175 fastq.gz 475.8 MB
EGAF00006419176 fastq.gz 459.3 MB
EGAF00006419177 fastq.gz 449.5 MB
EGAF00006419178 fastq.gz 856.4 MB
EGAF00006419179 fastq.gz 852.7 MB
EGAF00006419180 fastq.gz 938.0 MB
EGAF00006419181 fastq.gz 935.3 MB
EGAF00006419182 fastq.gz 996.9 MB
EGAF00006419183 fastq.gz 997.3 MB
EGAF00006419184 fastq.gz 414.4 MB
EGAF00006419185 fastq.gz 414.5 MB
EGAF00006419186 fastq.gz 420.7 MB
EGAF00006419187 fastq.gz 418.8 MB
EGAF00006419188 fastq.gz 398.5 MB
EGAF00006419189 fastq.gz 397.8 MB
EGAF00006419190 fastq.gz 766.4 MB
EGAF00006419191 fastq.gz 764.2 MB
EGAF00006419192 fastq.gz 838.1 MB
EGAF00006419193 fastq.gz 837.0 MB
EGAF00006419194 fastq.gz 889.9 MB
EGAF00006419195 fastq.gz 891.9 MB
EGAF00006419196 fastq.gz 1.1 GB
EGAF00006419197 fastq.gz 1.1 GB
EGAF00006419198 fastq.gz 1.1 GB
EGAF00006419199 fastq.gz 1.1 GB
EGAF00006419200 fastq.gz 1.1 GB
EGAF00006419201 fastq.gz 1.1 GB
EGAF00006419202 fastq.gz 3.0 GB
EGAF00006419203 fastq.gz 3.1 GB
EGAF00006419204 fastq.gz 3.0 GB
EGAF00006419205 fastq.gz 3.1 GB
EGAF00006419206 fastq.gz 2.0 GB
EGAF00006419207 fastq.gz 2.1 GB
EGAF00006419208 fastq.gz 2.0 GB
EGAF00006419209 fastq.gz 2.1 GB
EGAF00006419210 fastq.gz 4.0 GB
EGAF00006419211 fastq.gz 4.2 GB
EGAF00006419212 txt.gz 19.7 MB
EGAF00006419213 txt.gz 19.7 MB
EGAF00006419214 txt.gz 19.7 MB
EGAF00006419215 txt.gz 19.7 MB
EGAF00006419216 txt.gz 19.7 MB
EGAF00006419217 txt.gz 19.7 MB
EGAF00006419218 txt.gz 19.7 MB
EGAF00006419219 txt.gz 19.7 MB
EGAF00006419220 txt.gz 19.7 MB
EGAF00006419221 txt.gz 19.7 MB
EGAF00006419222 txt.gz 19.6 MB
EGAF00006419223 txt.gz 19.7 MB
EGAF00006419224 txt.gz 19.7 MB
EGAF00006419225 txt.gz 19.7 MB
EGAF00006419226 txt.gz 19.7 MB
EGAF00006419227 txt.gz 19.7 MB
EGAF00006419228 txt.gz 19.7 MB
EGAF00006419229 txt.gz 19.7 MB
EGAF00006419230 txt.gz 19.7 MB
EGAF00006419231 txt.gz 19.7 MB
EGAF00006419232 txt.gz 19.7 MB
EGAF00006419233 txt.gz 19.7 MB
EGAF00006419234 txt.gz 19.7 MB
EGAF00006419235 txt.gz 19.7 MB
EGAF00006419236 txt.gz 19.7 MB
EGAF00006419237 txt.gz 19.7 MB
EGAF00006419238 txt.gz 19.7 MB
EGAF00006419239 txt.gz 19.7 MB
EGAF00006419240 txt.gz 19.7 MB
EGAF00006419241 txt.gz 19.7 MB
EGAF00006419242 txt.gz 19.7 MB
EGAF00006419243 txt.gz 19.7 MB
EGAF00006419244 txt.gz 19.7 MB
EGAF00006419245 txt.gz 19.7 MB
EGAF00006419246 txt.gz 19.7 MB
EGAF00006419247 txt.gz 19.7 MB
EGAF00006419248 txt.gz 19.7 MB
EGAF00006419249 txt.gz 19.5 MB
EGAF00006419250 txt.gz 19.5 MB
EGAF00006419251 txt.gz 19.5 MB
EGAF00006419252 txt.gz 19.5 MB
EGAF00006419253 txt.gz 19.5 MB
EGAF00006419254 txt.gz 19.5 MB
EGAF00006419255 txt.gz 19.6 MB
EGAF00006419256 txt.gz 19.6 MB
EGAF00006419257 txt.gz 19.6 MB
EGAF00006419258 txt.gz 19.5 MB
EGAF00006419259 txt.gz 19.5 MB
EGAF00006419260 txt.gz 19.6 MB
EGAF00006419261 txt.gz 19.6 MB
EGAF00006419262 txt.gz 19.6 MB
EGAF00006419263 txt.gz 19.6 MB
EGAF00006419264 txt.gz 19.6 MB
EGAF00006419265 txt.gz 19.6 MB
EGAF00006419266 txt.gz 19.6 MB
EGAF00006419267 txt.gz 19.6 MB
EGAF00006419268 txt.gz 19.6 MB
EGAF00006419269 txt.gz 19.6 MB
EGAF00006419270 txt.gz 19.6 MB
EGAF00006419271 txt.gz 19.7 MB
EGAF00006419272 txt.gz 19.7 MB
EGAF00006419273 txt.gz 19.7 MB
EGAF00006419274 txt.gz 19.6 MB
EGAF00006419275 txt.gz 19.6 MB
EGAF00006419276 txt.gz 19.6 MB
EGAF00006419277 txt.gz 19.6 MB
EGAF00006419278 txt.gz 19.7 MB
EGAF00006419279 txt.gz 19.6 MB
EGAF00006419280 txt.gz 19.6 MB
EGAF00006419281 txt.gz 19.6 MB
EGAF00006419282 txt.gz 19.6 MB
EGAF00006419283 txt.gz 19.6 MB
138 Files (102.9 GB)