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Garvan/St Vincent’s Prostate Cancer Tissue and Data

The cohort (n=53) consists of prostate cancer patients from Australia. For each patient, a pair of blood and tumour samples were collected. The sequencing data was mapped to hg38 reference. Blood BAMs are named with “-B” as suffix and tumour BAMs are named with “-T” as suffix.

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Garvan/St Vincent’s Prostate Cancer Tissue and Data policy

The Tissue/Data Access Committee (TDAC) consists of seven members, including researchers, pathologists, a consumer representative, and a data expert. The committee Manager will be the secretary to the committee and will be the contact person for receiving applications and distributing them to the committee. The committee will meet monthly (either in person or by zoom) to review the Tissue/Data Access application forms (circulated by email) to consider requests. Quorum for decision-making will be a minimum of 4 members and include at least one of the chief Investigators and one Garvan member. Decisions will be made by consensus. Any member of the Committee directly involved in the application, or having a COI with applicants, can provide a view on the application but will not vote or take part in decision-making. Application Procedures The TDAC will consider requests for biospecimens and/or clinical data from all researchers. Biospecimens and associated clinical data from the Database/Tissue Bank will only be released to researchers who can provide a statement of ethics approval from the Clinical Investigation I Human Research Ethics Committee of their host institution in order to safeguard patient rights. The following information will be requested in applications for Data/Tissue access: • The applicant's name, institution, email address and telephone number • The research question/hypotheses to be tested • List of biospecimens or clinical data required • Statistical justification for the number and types of cases required (where applicable) • Brief description of the technical approach (for biospecimen I TMA release) • Evidence of the proposed technical approach's prior successful use (where applicable) • HREC approval number (and copy of approval if requested) to conduct proposed research (external applicants) Before submitting a request/release form, applicants will be encouraged to confer with the Database/Tissue Bank Manager and/or authorized representative to discuss the appropriateness of the biospecimens and/or clinical data for the proposed study and the feasibility of the request. Decision-making The TDAC will make decisions on approval of access to tissue/data using the following criteria: 1. The availability of tissue 2. The track record of the applicants in the technical approach and likelihood of significant outcomes from the research proposed 3. Non-overlap with projects being undertaken by the Prostate Group (except with compelling justification) 4. Alignment of the research purpose with patient’s informed consent and ethics approval (eg restrictions as to commercial research, or other requirements needing additional approval) 5. Any other restrictions or conditions that may apply to the uses or disclosures of the relevant tissue/data The TDAC can impose certain restrictions on all approvals, and/or specific restrictions on particular approvals, as follows: 1. No transfer to third parties allowed (all) 2. Acknowledgment of the Database/Tissue Bank in publications/presentations (all) 3. A report of the results of the research to be provided to TDAC after completion (or when requested) 4. Researchers can freely utilize the tissue/data for non-commercial research, but not for commercial purposes without the approval of TDAC and Garvan’s BD office (all) 5. Approval will not be given that excludes other researchers from accessing tissue/data (all) 6. Approval might be time-limited exclusive rights for a particular research development (particular) After approval by the TDAC, the Database/Tissue Manager will organize for the data and/or biospecimens to be sent de-identified to the researchers. Responsibilities It is the responsibility of the applicants to: • Provide a research proposal that justifies the request for tissue and/or data (adequate preliminary data) • Consult with a researcher on the Tissue/Data Access Committee prior to making an application • Submit a request/release form to the delegated Manager of the Database/Tissue Bank. • Obtain appropriate HREC approval/authorization for the use of tissue/data. It is the responsibility of Tissue/Data Access Committee to: • Review applications and approve the release of tissue and/or data based on the scientific value of the research proposal and the availability of the resource • Coordinate pre-exit examination of biospecimens and/or clinical data • Coordinate biospecimen and/or clinical data release • Review the completed data and publication

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006425 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006473924 bam 102.2 GB
EGAF00006473925 bam 201.9 GB
EGAF00006473926 bam 118.5 GB
EGAF00006473927 bam 168.6 GB
EGAF00006473928 bam 105.7 GB
EGAF00006473929 bam 195.3 GB
EGAF00006473930 bam 82.1 GB
EGAF00006473931 bam 165.4 GB
EGAF00006473932 bam 124.1 GB
EGAF00006473933 bam 202.0 GB
EGAF00006473934 bam 115.1 GB
EGAF00006473935 bam 193.0 GB
EGAF00006473936 bam 113.8 GB
EGAF00006473937 bam 185.9 GB
EGAF00006473938 bam 91.9 GB
EGAF00006473939 bam 155.8 GB
EGAF00006473940 bam 85.3 GB
EGAF00006473941 bam 196.2 GB
EGAF00006473942 bam 104.0 GB
EGAF00006473943 bam 194.1 GB
EGAF00006473944 bam 124.8 GB
EGAF00006473945 bam 194.8 GB
EGAF00006473946 bam 221.9 GB
EGAF00006473947 bam 240.7 GB
EGAF00006473948 bam 78.5 GB
EGAF00006473949 bam 146.6 GB
EGAF00006473950 bam 95.2 GB
EGAF00006473951 bam 148.7 GB
EGAF00006473952 bam 107.2 GB
EGAF00006473953 bam 199.7 GB
EGAF00006473954 bam 110.9 GB
EGAF00006473955 bam 174.4 GB
EGAF00006473956 bam 88.9 GB
EGAF00006473957 bam 285.0 GB
EGAF00006473958 bam 125.4 GB
EGAF00006473959 bam 241.6 GB
EGAF00006473960 bam 87.5 GB
EGAF00006473961 bam 166.9 GB
EGAF00006473962 bam 71.0 GB
EGAF00006473963 bam 222.9 GB
EGAF00006473964 bam 86.1 GB
EGAF00006473965 bam 176.2 GB
EGAF00006473966 bam 115.3 GB
EGAF00006473967 bam 224.9 GB
EGAF00006473968 bam 122.3 GB
EGAF00006473969 bam 241.2 GB
EGAF00006473970 bam 94.9 GB
EGAF00006473971 bam 189.1 GB
EGAF00006473972 bam 83.7 GB
EGAF00006473973 bam 171.0 GB
EGAF00006473974 bam 109.1 GB
EGAF00006473975 bam 190.0 GB
EGAF00006473976 bam 83.8 GB
EGAF00006473977 bam 159.6 GB
EGAF00006473978 bam 83.8 GB
EGAF00006473979 bam 170.2 GB
EGAF00006473980 bam 84.8 GB
EGAF00006473981 bam 135.0 GB
EGAF00006473982 bam 87.5 GB
EGAF00006473983 bam 151.6 GB
EGAF00006473984 bam 104.1 GB
EGAF00006473985 bam 220.2 GB
EGAF00006473986 bam 109.0 GB
EGAF00006473987 bam 186.5 GB
EGAF00006473988 bam 91.1 GB
EGAF00006473989 bam 175.2 GB
EGAF00006473990 bam 107.8 GB
EGAF00006473991 bam 183.0 GB
EGAF00006473992 bam 88.6 GB
EGAF00006473993 bam 194.0 GB
EGAF00006473994 bam 105.2 GB
EGAF00006473995 bam 195.3 GB
EGAF00006473996 bam 94.3 GB
EGAF00006473997 bam 148.5 GB
EGAF00006473998 bam 113.0 GB
EGAF00006473999 bam 238.3 GB
EGAF00006474000 bam 86.8 GB
EGAF00006474001 bam 178.0 GB
EGAF00006474002 bam 108.3 GB
EGAF00006474003 bam 283.7 GB
EGAF00006474004 bam 107.2 GB
EGAF00006474005 bam 170.6 GB
EGAF00006474006 bam 87.8 GB
EGAF00006474007 bam 132.0 GB
EGAF00006474008 bam 93.0 GB
EGAF00006474009 bam 164.5 GB
EGAF00006474010 bam 91.7 GB
EGAF00006474011 bam 194.7 GB
EGAF00006474012 bam 116.7 GB
EGAF00006474013 bam 203.4 GB
EGAF00006474014 bam 103.3 GB
EGAF00006474015 bam 231.0 GB
EGAF00006474016 bam 99.1 GB
EGAF00006474017 bam 173.2 GB
EGAF00006474018 bam 126.8 GB
EGAF00006474019 bam 235.5 GB
EGAF00006474020 bam 216.9 GB
EGAF00006474021 bam 207.9 GB
EGAF00006474022 bam 102.0 GB
EGAF00006474023 bam 210.5 GB
EGAF00006474024 bam 98.1 GB
EGAF00006474025 bam 176.8 GB
EGAF00006474026 bam 113.5 GB
EGAF00006474027 bam 153.2 GB
EGAF00006474028 bam 113.3 GB
EGAF00006474029 bam 196.0 GB
106 Files (15.7 TB)