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ATAC-seq in hiPSC-derived neurons after BDNF and KCl stimulations

Brain-Derived Neurotrophic Factor (BDNF) is crucial for neuronal survival, differentiation, synaptic plasticity, memory formation, and neurocognitive health. Molecular mechanisms of BDNF promoting cellular survival and synaptic plasticity have been intensely studied, yet its role in genome regulation is obscure. Using human induced pluripotent stem cell (hiPSC)-derived neurons via lentiviral delivery of the neuronal transcription factor Ngn2, we performed a temporal profiling (1h, 6h and 10h) of chromatin accessibility upon BDNF treatment or depolarization (KCl) to identify BDNF-specific chromatin-to-gene expression programs.

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DAC for Chromatin accessibility changes in hiPSC-derived neurons after BDNF and KCl stimulations

## Data Controller Institution’s Legal Name: European Molecular Biology Laboratory (EMBL) Institutional Postal Address: Meyerhofstraße 1, 69117 Heidelberg Institutional E-mail Address: coo-office@embl.org Website of the Institution: https://www.embl.org/ ## Authorised Representative of the Data Controller Name: Matti Tiirakari Position: Chief Operating Officer Affiliation: European Molecular Biology Laboratory (EMBL) Institutional Postal Address: Meyerhofstraße 1, 69117 Heidelberg Institutional E-mail Address: coo-office@embl.org Definitions Data: Refers to the controlled access data (the Data). Under this Agreement, the Data is pseudonymised. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve them from the Data Controller’s Institution upon approval of this DAA by the corresponding DAC within the Data Controller’s Institution. 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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006394 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006419383 txt.gz 1.2 GB
EGAF00006419384 txt.gz 1.2 GB
EGAF00006419385 txt.gz 1.5 GB
EGAF00006419386 txt.gz 1.5 GB
EGAF00006419387 txt.gz 1.5 GB
EGAF00006419388 txt.gz 1.5 GB
EGAF00006419389 txt.gz 1.5 GB
EGAF00006419390 txt.gz 1.5 GB
EGAF00006419391 txt.gz 1.3 GB
EGAF00006419392 txt.gz 1.3 GB
EGAF00006419393 txt.gz 1.2 GB
EGAF00006419394 txt.gz 1.2 GB
EGAF00006419395 txt.gz 1.5 GB
EGAF00006419396 txt.gz 1.5 GB
EGAF00006419397 txt.gz 1.3 GB
EGAF00006419398 txt.gz 1.3 GB
EGAF00006419399 txt.gz 1.2 GB
EGAF00006419400 txt.gz 1.2 GB
EGAF00006419401 txt.gz 1.6 GB
EGAF00006419402 txt.gz 1.6 GB
EGAF00006419403 txt.gz 1.4 GB
EGAF00006419404 txt.gz 1.4 GB
EGAF00006419405 txt.gz 1.3 GB
EGAF00006419406 txt.gz 1.3 GB
24 Files (33.1 GB)