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Oropharyngeal Squamous Cell Carcinoma Mutanome

This dataset comprises genetic variation data (as somatic indels and snvs VCFs) of 38 OPSCC tumors. WES was done using NextSeq 500 System running in 150 cycles (2x 75bp paired-end) mode. Sequence information was converted to FASTQ format using bcl2fastq v2.20.0.422. VCFs were generated using the Strelka package.

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OPSCC Mutanome Data Policy

Data access policy 1. Applicants must be researchers who are affiliated with an academic institution. 2. Applicants and all collaborators of the applicant who work with the data must be named. 3. Applicant and all collaborators must adhere to this data confidentiality policy. 4. Data must not be shared with other parties. 5. Efforts to identify subjects may under no circumstances be pursued. 6. A short proposal of the research for which the data are going to be used must be shared. 7. Publications using the data must acknowledge and cite the original work linked to the data obtained. 8. When publishing data derived from the analysis of this dataset, sample IDs must remain pseudonymized. New pseudonyms, different from the ones used in the dataset, must be used (double pseudonymization e.g. sample 1, 2, 3…).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006477 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006712274 vcf 48.5 kB
EGAF00006712275 vcf 6.2 MB
EGAF00006712276 vcf 43.8 kB
EGAF00006712277 vcf 7.5 MB
EGAF00006712278 vcf 40.5 kB
EGAF00006712279 vcf 120.5 kB
EGAF00006712280 vcf 49.5 kB
EGAF00006712281 vcf 228.2 kB
EGAF00006712282 vcf 43.5 kB
EGAF00006712283 vcf 5.2 MB
EGAF00006712284 vcf 45.6 kB
EGAF00006712285 vcf 6.7 MB
EGAF00006712286 vcf 42.7 kB
EGAF00006712287 vcf 4.4 MB
EGAF00006712288 vcf 42.2 kB
EGAF00006712289 vcf 13.1 MB
EGAF00006712290 vcf 42.5 kB
EGAF00006712291 vcf 4.1 MB
EGAF00006712292 vcf 42.5 kB
EGAF00006712293 vcf 298.6 kB
EGAF00006712294 vcf 43.0 kB
EGAF00006712295 vcf 348.9 kB
EGAF00006712296 vcf 42.1 kB
EGAF00006712297 vcf 381.2 kB
EGAF00006712298 vcf 42.9 kB
EGAF00006712299 vcf 130.9 kB
EGAF00006712300 vcf 45.8 kB
EGAF00006712301 vcf 165.0 kB
EGAF00006712302 vcf 42.4 kB
EGAF00006712303 vcf 427.4 kB
EGAF00006712304 vcf 41.8 kB
EGAF00006712305 vcf 136.6 kB
EGAF00006712306 vcf 40.5 kB
EGAF00006712307 vcf 240.6 kB
EGAF00006712308 vcf 40.8 kB
EGAF00006712309 vcf 171.8 kB
EGAF00006712310 vcf 42.9 kB
EGAF00006712311 vcf 113.9 kB
EGAF00006712312 vcf 39.8 kB
EGAF00006712313 vcf 211.3 kB
EGAF00006712314 vcf 43.4 kB
EGAF00006712315 vcf 402.2 kB
EGAF00006712316 vcf 41.6 kB
EGAF00006712317 vcf 107.5 kB
EGAF00006712318 vcf 41.6 kB
EGAF00006712319 vcf 271.6 kB
EGAF00006712320 vcf 42.4 kB
EGAF00006712321 vcf 185.3 kB
EGAF00006712322 vcf 43.1 kB
EGAF00006712323 vcf 97.2 kB
EGAF00006712324 vcf 40.8 kB
EGAF00006712325 vcf 129.8 kB
EGAF00006712326 vcf 40.0 kB
EGAF00006712327 vcf 103.3 kB
EGAF00006712328 vcf 42.6 kB
EGAF00006712329 vcf 190.1 kB
EGAF00006712330 vcf 42.1 kB
EGAF00006712331 vcf 140.7 kB
EGAF00006712332 vcf 41.8 kB
EGAF00006712333 vcf 109.3 kB
EGAF00006712334 vcf 43.4 kB
EGAF00006712335 vcf 207.5 kB
EGAF00006712336 vcf 44.2 kB
EGAF00006712337 vcf 185.0 kB
EGAF00006712338 vcf 43.7 kB
EGAF00006712339 vcf 316.9 kB
EGAF00006712340 vcf 41.6 kB
EGAF00006712341 vcf 140.1 kB
EGAF00006712342 vcf 48.6 kB
EGAF00006712343 vcf 169.1 kB
EGAF00006712344 vcf 42.7 kB
EGAF00006712345 vcf 11.3 MB
EGAF00006712346 vcf 41.4 kB
EGAF00006712347 vcf 16.7 MB
EGAF00006712348 vcf 46.9 kB
EGAF00006712349 vcf 3.6 MB
76 Files (86.2 MB)