About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Single nuclei RNA-Seq from 5 regions of the human fetal brain

Data generated through single nuclei RNA sequencing on 5 regions of the brain (frontal cortex, ganglionic eminence, hippocampus, thalamus and cerebellum) from 3 fetuses (two of 14 and one of 15 post-conception weeks, all female). Tissue was acquired from the MRC-Wellcome Trust Human Developmental Biology Resource (HDBR) with ethical approval. snRNA-seq libraries were prepared from ∼10,000 nuclei from each sample using Chromium Single Cell 3ʹ (v3) reagents (10X Genomics). Quality control of libraries was performed using the Agilent 5200 Fragment Analyzer before sequencing on an Illumina NovaSeq 6000 to a depth of at least 865 million (median = 1.01 billion) read pairs per library. Raw sequencing data were converted into FASTQ files. For a full description of data generation, please see Cameron et al, Biological Psychiatry 2022, https://doi.org/10.1016/j.biopsych.2022.06.033.

Request Access

Access to data is available through application to the Cardiff University DPMCN Functional Genomics Data Access Committee (email: BrayN3@Cardiff.ac.uk).

Access to data is available through application to the Cardiff University DPMCN Functional Genomics Data Access Committee (email: BrayN3@Cardiff.ac.uk). Data access will be granted to Principal Investigators with an institutional affiliation, and where the proposed research is consistent with the data use limitations of the dataset (based on original informed consent from the donors). 

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006537 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00006895731 fastq.gz 5.4 GB Report
EGAF00006895732 fastq.gz 12.3 GB Report
EGAF00006895733 fastq.gz 5.5 GB Report
EGAF00006895734 fastq.gz 12.5 GB Report
EGAF00006895735 fastq.gz 5.5 GB Report
EGAF00006895736 fastq.gz 12.5 GB Report
EGAF00006895737 fastq.gz 5.4 GB Report
EGAF00006895738 fastq.gz 12.4 GB Report
EGAF00006895739 fastq.gz 6.1 GB Report
EGAF00006895740 fastq.gz 13.0 GB Report
EGAF00006895741 fastq.gz 6.2 GB Report
EGAF00006895742 fastq.gz 13.3 GB Report
EGAF00006895743 fastq.gz 6.6 GB Report
EGAF00006895744 fastq.gz 14.0 GB Report
EGAF00006895745 fastq.gz 6.4 GB Report
EGAF00006895746 fastq.gz 13.7 GB Report
EGAF00006895747 fastq.gz 5.4 GB Report
EGAF00006895748 fastq.gz 12.2 GB Report
EGAF00006895749 fastq.gz 5.6 GB Report
EGAF00006895750 fastq.gz 12.5 GB Report
EGAF00006895751 fastq.gz 5.8 GB Report
EGAF00006895752 fastq.gz 13.0 GB Report
EGAF00006895753 fastq.gz 5.7 GB Report
EGAF00006895754 fastq.gz 12.8 GB Report
EGAF00006895755 fastq.gz 5.4 GB Report
EGAF00006895756 fastq.gz 12.3 GB Report
EGAF00006895757 fastq.gz 5.5 GB Report
EGAF00006895758 fastq.gz 12.5 GB Report
EGAF00006895759 fastq.gz 5.5 GB Report
EGAF00006895760 fastq.gz 12.5 GB Report
EGAF00006895761 fastq.gz 5.5 GB Report
EGAF00006895762 fastq.gz 12.4 GB Report
EGAF00006895763 fastq.gz 5.8 GB Report
EGAF00006895764 fastq.gz 12.8 GB Report
EGAF00006895765 fastq.gz 5.9 GB Report
EGAF00006895766 fastq.gz 13.0 GB Report
EGAF00006895767 fastq.gz 6.1 GB Report
EGAF00006895768 fastq.gz 13.5 GB Report
EGAF00006895769 fastq.gz 6.0 GB Report
EGAF00006895770 fastq.gz 13.2 GB Report
EGAF00006895771 fastq.gz 6.9 GB Report
EGAF00006895772 fastq.gz 15.8 GB Report
EGAF00006895773 fastq.gz 7.0 GB Report
EGAF00006895774 fastq.gz 16.1 GB Report
EGAF00006895775 fastq.gz 7.1 GB Report
EGAF00006895776 fastq.gz 16.2 GB Report
EGAF00006895777 fastq.gz 7.0 GB Report
EGAF00006895778 fastq.gz 16.0 GB Report
EGAF00006895779 fastq.gz 6.7 GB Report
EGAF00006895780 fastq.gz 15.5 GB Report
EGAF00006895781 fastq.gz 6.8 GB Report
EGAF00006895782 fastq.gz 15.8 GB Report
EGAF00006895783 fastq.gz 6.9 GB Report
EGAF00006895784 fastq.gz 15.8 GB Report
EGAF00006895785 fastq.gz 6.8 GB Report
EGAF00006895786 fastq.gz 15.7 GB Report
EGAF00006895787 fastq.gz 4.9 GB Report
EGAF00006895788 fastq.gz 11.1 GB Report
EGAF00006895789 fastq.gz 5.2 GB Report
EGAF00006895790 fastq.gz 11.6 GB Report
EGAF00006895791 fastq.gz 5.5 GB Report
EGAF00006895792 fastq.gz 12.2 GB Report
EGAF00006895793 fastq.gz 5.4 GB Report
EGAF00006895794 fastq.gz 12.0 GB Report
EGAF00006895795 fastq.gz 5.4 GB Report
EGAF00006895796 fastq.gz 12.2 GB Report
EGAF00006895797 fastq.gz 5.6 GB Report
EGAF00006895798 fastq.gz 12.5 GB Report
EGAF00006895799 fastq.gz 5.8 GB Report
EGAF00006895800 fastq.gz 13.0 GB Report
EGAF00006895801 fastq.gz 5.7 GB Report
EGAF00006895802 fastq.gz 12.8 GB Report
EGAF00006895803 fastq.gz 5.3 GB Report
EGAF00006895804 fastq.gz 12.1 GB Report
EGAF00006895805 fastq.gz 5.4 GB Report
EGAF00006895806 fastq.gz 12.3 GB Report
EGAF00006895807 fastq.gz 5.4 GB Report
EGAF00006895808 fastq.gz 12.3 GB Report
EGAF00006895809 fastq.gz 5.3 GB Report
EGAF00006895810 fastq.gz 12.2 GB Report
EGAF00006895811 fastq.gz 4.8 GB Report
EGAF00006895812 fastq.gz 10.9 GB Report
EGAF00006895813 fastq.gz 4.8 GB Report
EGAF00006895814 fastq.gz 11.1 GB Report
EGAF00006895815 fastq.gz 4.9 GB Report
EGAF00006895816 fastq.gz 11.1 GB Report
EGAF00006895817 fastq.gz 4.8 GB Report
EGAF00006895818 fastq.gz 11.0 GB Report
EGAF00006895819 fastq.gz 5.3 GB Report
EGAF00006895820 fastq.gz 11.7 GB Report
EGAF00006895821 fastq.gz 5.4 GB Report
EGAF00006895822 fastq.gz 12.0 GB Report
EGAF00006895823 fastq.gz 5.6 GB Report
EGAF00006895824 fastq.gz 12.4 GB Report
EGAF00006895825 fastq.gz 5.5 GB Report
EGAF00006895826 fastq.gz 12.2 GB Report
EGAF00006895827 fastq.gz 6.7 GB Report
EGAF00006895828 fastq.gz 15.4 GB Report
EGAF00006895829 fastq.gz 6.8 GB Report
EGAF00006895830 fastq.gz 15.7 GB Report
EGAF00006895831 fastq.gz 6.8 GB Report
EGAF00006895832 fastq.gz 15.6 GB Report
EGAF00006895833 fastq.gz 6.8 GB Report
EGAF00006895834 fastq.gz 15.5 GB Report
EGAF00006895835 fastq.gz 6.6 GB Report
EGAF00006895836 fastq.gz 15.0 GB Report
EGAF00006895837 fastq.gz 6.7 GB Report
EGAF00006895838 fastq.gz 15.3 GB Report
EGAF00006895839 fastq.gz 6.7 GB Report
EGAF00006895840 fastq.gz 15.3 GB Report
EGAF00006895841 fastq.gz 6.7 GB Report
EGAF00006895842 fastq.gz 15.2 GB Report
EGAF00006895843 fastq.gz 4.5 GB Report
EGAF00006895844 fastq.gz 10.3 GB Report
EGAF00006895845 fastq.gz 4.6 GB Report
EGAF00006895846 fastq.gz 10.5 GB Report
EGAF00006895847 fastq.gz 4.6 GB Report
EGAF00006895848 fastq.gz 10.5 GB Report
EGAF00006895849 fastq.gz 4.6 GB Report
EGAF00006895850 fastq.gz 10.4 GB Report
EGAF00006895851 fastq.gz 5.2 GB Report
EGAF00006895852 fastq.gz 12.0 GB Report
EGAF00006895853 fastq.gz 5.3 GB Report
EGAF00006895854 fastq.gz 12.2 GB Report
EGAF00006895855 fastq.gz 5.3 GB Report
EGAF00006895856 fastq.gz 12.2 GB Report
EGAF00006895857 fastq.gz 5.3 GB Report
EGAF00006895858 fastq.gz 12.1 GB Report
EGAF00006895859 fastq.gz 5.0 GB Report
EGAF00006895860 fastq.gz 11.4 GB Report
EGAF00006895861 fastq.gz 5.1 GB Report
EGAF00006895862 fastq.gz 11.6 GB Report
EGAF00006895863 fastq.gz 5.1 GB Report
EGAF00006895864 fastq.gz 11.6 GB Report
EGAF00006895865 fastq.gz 5.0 GB Report
EGAF00006895866 fastq.gz 11.5 GB Report
136 Files (1.3 TB)