About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Whole genome sequencing

Whole genome sequencing of high-grade serous ovarian cancer (HGSC) tumours and matched normals from 15 patients with homologous recombination deficiencies. The dataset includes fastq files from 56 HGSC tumours (1 primary, 1 relapse, 54 end-stage) and 15 matched normals. Sequence libraries were generated from tumour and matched normal genomic DNA using the KAPA HyperPrep PCR-free library preparation kit (Roche), or the Illumina TruSeq DNA Nano kit according to manufacturer’s instructions. Sequencing was carried out by the Kinghorn Centre for Clinical Genomics Sequencing Laboratory (Sydney, Australia) on the HiSeq X Ten System (Illumina) or by the Australian Genome Research Facility (Melbourne, Australia) on an Illumina NovaSeq to a minimum base coverage of 30-fold for normal DNA and 60-fold for tumour DNA samples.

Request Access

Peter MacCallum Cancer Centre Research Data Access Committee data access policy

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. 3. The User Institution agrees to protect the confidentiality and privacy of Research Participants in any research papers or publications that they prepare by using their best efforts to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the User Institution that may arise (whether directly or indirectly) in any way whatsoever from the User Institution’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Authorship guide and the Toronto Statement. This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research relating to the Data. 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Peter Mac within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Peter Mac prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Peter Mac as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Peter Mac may terminate this agreement by written notice to the User Institution at any time and for any reason or no reason. If this agreement is terminated, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Peter Mac. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected by Peter Mac or its delegate to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Victoria, Australia, and shall be subject to the exclusive jurisdiction of the Victorian courts. 20. The User Institution agrees that its rights and obligations hereunder are not assignable. 21. This agreement does not constitute any party the agent of another or imply that the parties intend constituting a partnership, joint venture or other form of association in which any party may be liable for the acts or omissions of the other.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006789 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007772984 fastq.gz 16.6 GB Report
EGAF00007772985 fastq.gz 16.8 GB Report
EGAF00007772986 fastq.gz 16.6 GB Report
EGAF00007772987 fastq.gz 17.0 GB Report
EGAF00007772988 fastq.gz 20.6 GB Report
EGAF00007772989 fastq.gz 21.4 GB Report
EGAF00007772990 fastq.gz 20.0 GB Report
EGAF00007772991 fastq.gz 21.1 GB Report
EGAF00007772992 fastq.gz 12.8 GB Report
EGAF00007772993 fastq.gz 13.1 GB Report
EGAF00007772994 fastq.gz 12.9 GB Report
EGAF00007772995 fastq.gz 13.4 GB Report
EGAF00007772996 fastq.gz 13.5 GB Report
EGAF00007772997 fastq.gz 13.8 GB Report
EGAF00007772998 fastq.gz 13.1 GB Report
EGAF00007772999 fastq.gz 13.6 GB Report
EGAF00007773000 fastq.gz 15.5 GB Report
EGAF00007773001 fastq.gz 16.1 GB Report
EGAF00007773002 fastq.gz 15.4 GB Report
EGAF00007773003 fastq.gz 16.2 GB Report
EGAF00007773004 fastq.gz 12.0 GB Report
EGAF00007773005 fastq.gz 12.2 GB Report
EGAF00007773006 fastq.gz 11.8 GB Report
EGAF00007773007 fastq.gz 12.2 GB Report
EGAF00007773014 fastq.gz 18.9 GB Report
EGAF00007773015 fastq.gz 19.4 GB Report
EGAF00007773016 fastq.gz 18.6 GB Report
EGAF00007773017 fastq.gz 19.3 GB Report
EGAF00007773018 fastq.gz 16.4 GB Report
EGAF00007773019 fastq.gz 17.0 GB Report
EGAF00007773020 fastq.gz 16.1 GB Report
EGAF00007773021 fastq.gz 16.9 GB Report
EGAF00007773028 fastq.gz 17.2 GB Report
EGAF00007773029 fastq.gz 17.7 GB Report
EGAF00007773030 fastq.gz 17.4 GB Report
EGAF00007773031 fastq.gz 18.2 GB Report
EGAF00007773032 fastq.gz 10.6 GB Report
EGAF00007773033 fastq.gz 11.0 GB Report
EGAF00007773034 fastq.gz 10.4 GB Report
EGAF00007773035 fastq.gz 11.0 GB Report
EGAF00007773036 fastq.gz 14.3 GB Report
EGAF00007773037 fastq.gz 14.5 GB Report
EGAF00007773038 fastq.gz 14.1 GB Report
EGAF00007773039 fastq.gz 14.6 GB Report
EGAF00007773040 fastq.gz 15.1 GB Report
EGAF00007773041 fastq.gz 15.3 GB Report
EGAF00007773042 fastq.gz 14.7 GB Report
EGAF00007773043 fastq.gz 15.2 GB Report
EGAF00007773044 fastq.gz 17.7 GB Report
EGAF00007773045 fastq.gz 18.3 GB Report
EGAF00007773046 fastq.gz 17.6 GB Report
EGAF00007773047 fastq.gz 18.5 GB Report
EGAF00007773048 fastq.gz 18.2 GB Report
EGAF00007773049 fastq.gz 18.8 GB Report
EGAF00007773050 fastq.gz 8.8 GB Report
EGAF00007773051 fastq.gz 9.1 GB Report
EGAF00007773496 fastq.gz 36.4 GB Report
EGAF00007773497 fastq.gz 36.9 GB Report
EGAF00007773498 fastq.gz 27.6 GB Report
EGAF00007773499 fastq.gz 27.9 GB Report
EGAF00007773500 fastq.gz 28.9 GB Report
EGAF00007773501 fastq.gz 29.8 GB Report
EGAF00007773502 fastq.gz 26.7 GB Report
EGAF00007773503 fastq.gz 27.0 GB Report
EGAF00007773504 fastq.gz 26.4 GB Report
EGAF00007773505 fastq.gz 27.5 GB Report
EGAF00007773506 fastq.gz 28.0 GB Report
EGAF00007773507 fastq.gz 29.0 GB Report
EGAF00007773508 fastq.gz 31.6 GB Report
EGAF00007773509 fastq.gz 32.7 GB Report
EGAF00007773516 fastq.gz 33.0 GB Report
EGAF00007773517 fastq.gz 34.5 GB Report
EGAF00007773518 fastq.gz 26.4 GB Report
EGAF00007773519 fastq.gz 27.5 GB Report
EGAF00007773520 fastq.gz 35.2 GB Report
EGAF00007773521 fastq.gz 36.5 GB Report
EGAF00007773522 fastq.gz 27.2 GB Report
EGAF00007773523 fastq.gz 27.8 GB Report
EGAF00007773524 fastq.gz 32.1 GB Report
EGAF00007773525 fastq.gz 33.4 GB Report
EGAF00007773526 fastq.gz 29.0 GB Report
EGAF00007773527 fastq.gz 30.5 GB Report
EGAF00007773528 fastq.gz 27.5 GB Report
EGAF00007773529 fastq.gz 28.4 GB Report
EGAF00007773530 fastq.gz 31.3 GB Report
EGAF00007773531 fastq.gz 32.0 GB Report
EGAF00007773532 fastq.gz 32.6 GB Report
EGAF00007773533 fastq.gz 33.9 GB Report
EGAF00007773540 fastq.gz 30.4 GB Report
EGAF00007773541 fastq.gz 31.0 GB Report
EGAF00007773542 fastq.gz 27.2 GB Report
EGAF00007773543 fastq.gz 27.7 GB Report
EGAF00007773544 fastq.gz 58.3 GB Report
EGAF00007773545 fastq.gz 60.7 GB Report
EGAF00007773546 fastq.gz 28.5 GB Report
EGAF00007773547 fastq.gz 28.8 GB Report
EGAF00007773548 fastq.gz 36.0 GB Report
EGAF00007773549 fastq.gz 37.1 GB Report
EGAF00007773550 fastq.gz 30.4 GB Report
EGAF00007773551 fastq.gz 31.0 GB Report
EGAF00007773561 fastq.gz 33.0 GB Report
EGAF00007773562 fastq.gz 33.6 GB Report
EGAF00007773563 fastq.gz 29.6 GB Report
EGAF00007773564 fastq.gz 30.0 GB Report
EGAF00007773565 fastq.gz 29.4 GB Report
EGAF00007773566 fastq.gz 30.0 GB Report
EGAF00007773567 fastq.gz 26.4 GB Report
EGAF00007773568 fastq.gz 28.3 GB Report
EGAF00007773569 fastq.gz 33.0 GB Report
EGAF00007773570 fastq.gz 33.9 GB Report
EGAF00007773571 fastq.gz 28.9 GB Report
EGAF00007773572 fastq.gz 29.6 GB Report
EGAF00007773573 fastq.gz 28.4 GB Report
EGAF00007773574 fastq.gz 29.6 GB Report
EGAF00007773581 fastq.gz 41.0 GB Report
EGAF00007773582 fastq.gz 42.0 GB Report
EGAF00007773583 fastq.gz 25.5 GB Report
EGAF00007773584 fastq.gz 25.9 GB Report
EGAF00007773585 fastq.gz 31.1 GB Report
EGAF00007773586 fastq.gz 31.9 GB Report
EGAF00007773587 fastq.gz 25.2 GB Report
EGAF00007773588 fastq.gz 25.4 GB Report
EGAF00007773589 fastq.gz 35.1 GB Report
EGAF00007773590 fastq.gz 36.0 GB Report
EGAF00007773591 fastq.gz 29.3 GB Report
EGAF00007773592 fastq.gz 29.9 GB Report
EGAF00007773593 fastq.gz 27.6 GB Report
EGAF00007773594 fastq.gz 28.4 GB Report
EGAF00007773598 fastq.gz 16.2 GB Report
EGAF00007773599 fastq.gz 17.0 GB Report
EGAF00007773600 fastq.gz 19.2 GB Report
EGAF00007773601 fastq.gz 19.8 GB Report
EGAF00007773602 fastq.gz 27.5 GB Report
EGAF00007773603 fastq.gz 28.6 GB Report
EGAF00007773604 fastq.gz 27.7 GB Report
EGAF00007773605 fastq.gz 28.6 GB Report
EGAF00007773606 fastq.gz 26.0 GB Report
EGAF00007773607 fastq.gz 26.4 GB Report
EGAF00007773608 fastq.gz 31.3 GB Report
EGAF00007773609 fastq.gz 32.5 GB Report
EGAF00007773610 fastq.gz 31.5 GB Report
EGAF00007773611 fastq.gz 32.4 GB Report
EGAF00007773612 fastq.gz 26.5 GB Report
EGAF00007773613 fastq.gz 27.5 GB Report
EGAF00007773614 fastq.gz 26.7 GB Report
EGAF00007773615 fastq.gz 27.6 GB Report
EGAF00007773619 fastq.gz 31.7 GB Report
EGAF00007773620 fastq.gz 32.8 GB Report
EGAF00007773621 fastq.gz 31.8 GB Report
EGAF00007773622 fastq.gz 32.7 GB Report
EGAF00007773623 fastq.gz 27.7 GB Report
EGAF00007773624 fastq.gz 28.6 GB Report
EGAF00007773625 fastq.gz 27.8 GB Report
EGAF00007773626 fastq.gz 28.6 GB Report
EGAF00007773627 fastq.gz 27.8 GB Report
EGAF00007773628 fastq.gz 28.8 GB Report
EGAF00007773629 fastq.gz 27.9 GB Report
EGAF00007773630 fastq.gz 28.8 GB Report
EGAF00007773631 fastq.gz 19.6 GB Report
EGAF00007773632 fastq.gz 20.6 GB Report
EGAF00007773633 fastq.gz 14.4 GB Report
EGAF00007773634 fastq.gz 14.9 GB Report
EGAF00007773638 fastq.gz 38.2 GB Report
EGAF00007773639 fastq.gz 43.6 GB Report
EGAF00007773640 fastq.gz 36.4 GB Report
EGAF00007773641 fastq.gz 41.2 GB Report
EGAF00007773642 fastq.gz 37.8 GB Report
EGAF00007773643 fastq.gz 43.0 GB Report
EGAF00007773644 fastq.gz 38.0 GB Report
EGAF00007773645 fastq.gz 43.5 GB Report
EGAF00007773646 fastq.gz 40.3 GB Report
EGAF00007773647 fastq.gz 46.4 GB Report
EGAF00007773648 fastq.gz 38.2 GB Report
EGAF00007773649 fastq.gz 45.3 GB Report
EGAF00007773650 fastq.gz 37.5 GB Report
EGAF00007773651 fastq.gz 44.7 GB Report
EGAF00007773652 fastq.gz 40.4 GB Report
EGAF00007773653 fastq.gz 46.9 GB Report
EGAF00007773654 fastq.gz 37.8 GB Report
EGAF00007773655 fastq.gz 44.5 GB Report
EGAF00007773656 fastq.gz 40.6 GB Report
EGAF00007773657 fastq.gz 48.4 GB Report
EGAF00007773658 fastq.gz 42.5 GB Report
EGAF00007773659 fastq.gz 49.9 GB Report
EGAF00007773660 fastq.gz 41.2 GB Report
EGAF00007773661 fastq.gz 49.7 GB Report
EGAF00007773662 fastq.gz 37.7 GB Report
EGAF00007773663 fastq.gz 46.3 GB Report
EGAF00007773664 fastq.gz 39.9 GB Report
EGAF00007773665 fastq.gz 45.5 GB Report
EGAF00007773666 fastq.gz 39.5 GB Report
EGAF00007773667 fastq.gz 47.7 GB Report
EGAF00007773668 fastq.gz 39.2 GB Report
EGAF00007773669 fastq.gz 47.0 GB Report
EGAF00007773670 fastq.gz 40.4 GB Report
EGAF00007773671 fastq.gz 47.2 GB Report
EGAF00007773672 fastq.gz 42.7 GB Report
EGAF00007773673 fastq.gz 50.3 GB Report
EGAF00007773674 fastq.gz 42.2 GB Report
EGAF00007773675 fastq.gz 49.7 GB Report
EGAF00007773676 fastq.gz 40.5 GB Report
EGAF00007773677 fastq.gz 46.9 GB Report
EGAF00007773678 fastq.gz 38.7 GB Report
EGAF00007773679 fastq.gz 45.0 GB Report
EGAF00007773680 fastq.gz 41.6 GB Report
EGAF00007773681 fastq.gz 48.4 GB Report
EGAF00007773682 fastq.gz 41.9 GB Report
EGAF00007773683 fastq.gz 48.0 GB Report
EGAF00007773684 fastq.gz 37.0 GB Report
EGAF00007773685 fastq.gz 44.0 GB Report
EGAF00007773686 fastq.gz 41.2 GB Report
EGAF00007773687 fastq.gz 50.4 GB Report
EGAF00007773688 fastq.gz 40.5 GB Report
EGAF00007773689 fastq.gz 50.0 GB Report
EGAF00007773690 fastq.gz 39.2 GB Report
EGAF00007773691 fastq.gz 46.2 GB Report
EGAF00007773692 fastq.gz 38.7 GB Report
EGAF00007773693 fastq.gz 45.2 GB Report
EGAF00007773694 fastq.gz 37.8 GB Report
EGAF00007773695 fastq.gz 44.5 GB Report
EGAF00007773696 fastq.gz 38.6 GB Report
EGAF00007773697 fastq.gz 45.2 GB Report
EGAF00007773698 fastq.gz 39.0 GB Report
EGAF00007773699 fastq.gz 46.1 GB Report
EGAF00007773700 fastq.gz 37.3 GB Report
EGAF00007773701 fastq.gz 42.9 GB Report
EGAF00007773702 fastq.gz 38.9 GB Report
EGAF00007773703 fastq.gz 45.5 GB Report
EGAF00007773704 fastq.gz 39.4 GB Report
EGAF00007773705 fastq.gz 46.1 GB Report
EGAF00007773706 fastq.gz 40.2 GB Report
EGAF00007773707 fastq.gz 46.4 GB Report
EGAF00007773708 fastq.gz 40.6 GB Report
EGAF00007773709 fastq.gz 46.7 GB Report
EGAF00007773710 fastq.gz 40.3 GB Report
EGAF00007773711 fastq.gz 46.4 GB Report
EGAF00007773712 fastq.gz 41.2 GB Report
EGAF00007773713 fastq.gz 47.8 GB Report
EGAF00007773714 fastq.gz 39.7 GB Report
EGAF00007773715 fastq.gz 45.5 GB Report
EGAF00007773716 fastq.gz 41.1 GB Report
EGAF00007773717 fastq.gz 47.8 GB Report
EGAF00007773718 fastq.gz 41.1 GB Report
EGAF00007773719 fastq.gz 47.9 GB Report
EGAF00007773720 fastq.gz 40.5 GB Report
EGAF00007773721 fastq.gz 46.7 GB Report
EGAF00007773722 fastq.gz 39.5 GB Report
EGAF00007773723 fastq.gz 46.8 GB Report
EGAF00007773724 fastq.gz 39.5 GB Report
EGAF00007773725 fastq.gz 46.2 GB Report
EGAF00007773726 fastq.gz 38.7 GB Report
EGAF00007773727 fastq.gz 45.6 GB Report
EGAF00007773728 fastq.gz 39.1 GB Report
EGAF00007773729 fastq.gz 45.6 GB Report
EGAF00007773730 fastq.gz 39.9 GB Report
EGAF00007773731 fastq.gz 46.3 GB Report
EGAF00007773732 fastq.gz 39.4 GB Report
EGAF00007773733 fastq.gz 46.2 GB Report
EGAF00007773734 fastq.gz 39.2 GB Report
EGAF00007773735 fastq.gz 45.4 GB Report
EGAF00007773736 fastq.gz 40.2 GB Report
EGAF00007773737 fastq.gz 47.8 GB Report
EGAF00007773738 fastq.gz 31.8 GB Report
EGAF00007773739 fastq.gz 37.1 GB Report
EGAF00007773740 fastq.gz 39.5 GB Report
EGAF00007773741 fastq.gz 48.7 GB Report
EGAF00007773742 fastq.gz 40.2 GB Report
EGAF00007773743 fastq.gz 48.7 GB Report
268 Files (8.6 TB)