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RNA-seq of cells after injection into immunodeficient mice

This dataset includes 73 samples profiled by high-throughput Illumina sequencing, in bam format, aligned to GRCh37. Normal human CD34+ cord blood (CB), bone marrow (BM), or post-natal thymus (PNT) cells were transduced with various combinations of T-ALL oncogenes, cultured in vitro on OP9-DL1 feeders for up to 25 days, and then transplanted into immunodeficient NSG or NRG mice. The samples were collected after development of frank leukemia in recipient mice.

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Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006055 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007773859 bam 2.5 GB
EGAF00007773860 bam 2.9 GB
EGAF00007773861 bam 2.7 GB
EGAF00007773862 bam 2.7 GB
EGAF00007773864 bam 2.5 GB
EGAF00007773865 bam 2.4 GB
EGAF00007773867 bam 2.7 GB
EGAF00007773868 bam 2.1 GB
EGAF00007773869 bam 2.8 GB
EGAF00007773870 bam 2.8 GB
EGAF00007773871 bam 2.5 GB
EGAF00007773872 bam 2.5 GB
EGAF00007773873 bam 2.5 GB
EGAF00007773874 bam 2.5 GB
EGAF00007773875 bam 2.6 GB
EGAF00007773876 bam 2.7 GB
EGAF00007773877 bam 2.6 GB
EGAF00007773970 bam 2.6 GB
EGAF00007773971 bam 2.5 GB
EGAF00007773972 bam 2.0 GB
EGAF00007773973 bam 2.7 GB
EGAF00007773974 bam 2.4 GB
EGAF00007773975 bam 2.0 GB
EGAF00007773976 bam 2.3 GB
EGAF00007773977 bam 2.3 GB
EGAF00007773978 bam 2.4 GB
EGAF00007773979 bam 2.2 GB
EGAF00007773980 bam 2.5 GB
EGAF00007773981 bam 2.2 GB
EGAF00007773982 bam 2.6 GB
EGAF00007773983 bam 2.4 GB
EGAF00007773984 bam 2.4 GB
EGAF00007773986 bam 2.6 GB
EGAF00007773987 bam 2.6 GB
EGAF00007773988 bam 2.5 GB
EGAF00007773989 bam 2.3 GB
EGAF00007773990 bam 2.4 GB
EGAF00007773991 bam 2.3 GB
EGAF00007773992 bam 2.2 GB
EGAF00007773993 bam 2.1 GB
EGAF00007773994 bam 2.3 GB
EGAF00007773995 bam 2.2 GB
EGAF00007773997 bam 2.2 GB
EGAF00007773998 bam 2.1 GB
EGAF00007773999 bam 2.2 GB
EGAF00007774000 bam 2.0 GB
EGAF00007774001 bam 2.0 GB
EGAF00007774002 bam 2.1 GB
EGAF00007774003 bam 1.8 GB
EGAF00007774004 bam 2.2 GB
EGAF00007774005 bam 2.0 GB
EGAF00007774006 bam 2.2 GB
EGAF00007774007 bam 2.1 GB
EGAF00007774008 bam 2.1 GB
EGAF00007774009 bam 2.2 GB
EGAF00007774010 bam 1.8 GB
EGAF00007774011 bam 1.9 GB
EGAF00007774013 bam 1.8 GB
EGAF00007774014 bam 1.6 GB
EGAF00007774015 bam 1.3 GB
EGAF00007774016 bam 1.8 GB
EGAF00007774017 bam 2.0 GB
EGAF00007774018 bam 1.7 GB
EGAF00007774019 bam 1.8 GB
EGAF00007774020 bam 1.8 GB
EGAF00007774021 bam 1.8 GB
EGAF00007774022 bam 1.9 GB
EGAF00007774023 bam 1.8 GB
EGAF00007774024 bam 1.7 GB
EGAF00007774025 bam 1.8 GB
EGAF00007774026 bam 1.8 GB
EGAF00007774027 bam 1.8 GB
EGAF00007774028 bam 1.9 GB
73 Files (162.1 GB)