About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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GELATO clinical trial RNA-Seq data (metastatic lesions)

RNA-Seq data of 46 matched lobular breast cancer metastatic samples obtained from 21 unique patients from GELATO clinical trial assayed at three timepoints: at baseline (directly after patient randomization), pre-atezolizumab (after induction treatment with carboplatin for two weeks) and on atezolizumab (after two cycles of atezolizumab combined with carboplatin). The included raw transcriptome sequencing data in fastq format was generated using Illumina NovaSeq 6000 from fresh frozen material.

Request Access

DUO:0000001
version: 2021-02-23

data use permission

A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used.

Data Access Committee of the Kok group, NKI.

To request access to the datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to KT&C and the Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the Data Access Committee reserves the right to withhold granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006902 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007846466 fastq.gz 685.7 MB Report
EGAF00007846467 fastq.gz 702.5 MB Report
EGAF00007846468 fastq.gz 551.4 MB Report
EGAF00007846469 fastq.gz 563.5 MB Report
EGAF00007846470 fastq.gz 1.0 GB Report
EGAF00007846471 fastq.gz 1.0 GB Report
EGAF00007846472 fastq.gz 648.6 MB Report
EGAF00007846473 fastq.gz 663.8 MB Report
EGAF00007846474 fastq.gz 417.7 MB Report
EGAF00007846475 fastq.gz 428.3 MB Report
EGAF00007846476 fastq.gz 825.8 MB Report
EGAF00007846477 fastq.gz 847.8 MB Report
EGAF00007846478 fastq.gz 926.0 MB Report
EGAF00007846479 fastq.gz 929.1 MB Report
EGAF00007846480 fastq.gz 751.2 MB Report
EGAF00007846481 fastq.gz 756.8 MB Report
EGAF00007846482 fastq.gz 1.1 GB Report
EGAF00007846483 fastq.gz 1.1 GB Report
EGAF00007846484 fastq.gz 881.6 MB Report
EGAF00007846485 fastq.gz 902.3 MB Report
EGAF00007846486 fastq.gz 239.1 MB Report
EGAF00007846487 fastq.gz 242.9 MB Report
EGAF00007846488 fastq.gz 299.1 MB Report
EGAF00007846489 fastq.gz 304.1 MB Report
EGAF00007846490 fastq.gz 707.0 MB Report
EGAF00007846491 fastq.gz 721.5 MB Report
EGAF00007846492 fastq.gz 634.8 MB Report
EGAF00007846493 fastq.gz 648.3 MB Report
EGAF00007846494 fastq.gz 692.0 MB Report
EGAF00007846495 fastq.gz 706.2 MB Report
EGAF00007846496 fastq.gz 726.4 MB Report
EGAF00007846497 fastq.gz 748.6 MB Report
EGAF00007846498 fastq.gz 753.4 MB Report
EGAF00007846499 fastq.gz 771.3 MB Report
EGAF00007846500 fastq.gz 817.0 MB Report
EGAF00007846501 fastq.gz 838.1 MB Report
EGAF00007846502 fastq.gz 779.5 MB Report
EGAF00007846503 fastq.gz 799.5 MB Report
EGAF00007846504 fastq.gz 741.1 MB Report
EGAF00007846505 fastq.gz 759.9 MB Report
EGAF00007846506 fastq.gz 849.9 MB Report
EGAF00007846507 fastq.gz 874.6 MB Report
EGAF00007846508 fastq.gz 751.1 MB Report
EGAF00007846509 fastq.gz 770.8 MB Report
EGAF00007846510 fastq.gz 762.3 MB Report
EGAF00007846511 fastq.gz 783.9 MB Report
EGAF00007846512 fastq.gz 716.0 MB Report
EGAF00007846513 fastq.gz 736.6 MB Report
EGAF00007846514 fastq.gz 642.2 MB Report
EGAF00007846515 fastq.gz 664.5 MB Report
EGAF00007846516 fastq.gz 652.8 MB Report
EGAF00007846517 fastq.gz 664.8 MB Report
EGAF00007846518 fastq.gz 579.0 MB Report
EGAF00007846519 fastq.gz 588.6 MB Report
EGAF00007846520 fastq.gz 632.3 MB Report
EGAF00007846521 fastq.gz 643.0 MB Report
EGAF00007846522 fastq.gz 993.2 MB Report
EGAF00007846523 fastq.gz 1.0 GB Report
EGAF00007846524 fastq.gz 995.1 MB Report
EGAF00007846525 fastq.gz 1.0 GB Report
EGAF00007846526 fastq.gz 696.2 MB Report
EGAF00007846527 fastq.gz 709.7 MB Report
EGAF00007846528 fastq.gz 942.7 MB Report
EGAF00007846529 fastq.gz 969.7 MB Report
EGAF00007846530 fastq.gz 848.3 MB Report
EGAF00007846531 fastq.gz 870.0 MB Report
EGAF00007846532 fastq.gz 203.2 MB Report
EGAF00007846533 fastq.gz 204.7 MB Report
EGAF00007846534 fastq.gz 496.1 MB Report
EGAF00007846535 fastq.gz 505.6 MB Report
EGAF00007846536 fastq.gz 557.1 MB Report
EGAF00007846537 fastq.gz 568.9 MB Report
EGAF00007846538 fastq.gz 884.2 MB Report
EGAF00007846539 fastq.gz 900.2 MB Report
EGAF00007846540 fastq.gz 799.7 MB Report
EGAF00007846541 fastq.gz 823.9 MB Report
EGAF00007846542 fastq.gz 640.5 MB Report
EGAF00007846543 fastq.gz 648.4 MB Report
EGAF00007846544 fastq.gz 669.2 MB Report
EGAF00007846545 fastq.gz 685.0 MB Report
EGAF00007846546 fastq.gz 1.3 GB Report
EGAF00007846547 fastq.gz 1.3 GB Report
EGAF00007846548 fastq.gz 791.0 MB Report
EGAF00007846549 fastq.gz 810.6 MB Report
EGAF00007846550 fastq.gz 517.1 MB Report
EGAF00007846551 fastq.gz 529.0 MB Report
EGAF00007846552 fastq.gz 870.9 MB Report
EGAF00007846553 fastq.gz 890.6 MB Report
EGAF00007846554 fastq.gz 740.2 MB Report
EGAF00007846555 fastq.gz 757.8 MB Report
EGAF00007846556 fastq.gz 550.6 MB Report
EGAF00007846557 fastq.gz 560.8 MB Report
92 Files (67.2 GB)