GELATO clinical trial whole exome sequencing data (primary tumors and local recurrences)

Paired-end whole exome sequencing of 10 lobular breast cancer primary tumors, 3 local recurrences and matched normal samples obtained from 10 unique patients from the GELATO clinical trial. The included raw sequencing data in fastq format was generated using Illumina NovaSeq 6000 from archived FFPE material (tumor data) and fresh frozen material (matched normal data).

23 samples
DAC: EGAC00001003025
Technology: Illumina NovaSeq 6000

Access Policy1 Study Files

Metadata

Request Access

None DUO:0000001 (version: 2021-02-23)data use permissionA data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used.

Data Access Committee of the Kok group, NKI.

To request access to the datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to KT&C and the Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the Data Access Committee reserves the right to withhold granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001006902	PD-L1 blockade in combination with carboplatin as immune induction in metastatic lobular breast cancer: the GELATO-trial	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00007846414	fastq.gz	5.3 GB
EGAF00007846415	fastq.gz	5.4 GB
EGAF00007846420	fastq.gz	4.9 GB
EGAF00007846421	fastq.gz	5.0 GB
EGAF00007846424	fastq.gz	5.2 GB
EGAF00007846425	fastq.gz	5.4 GB
EGAF00007846428	fastq.gz	5.2 GB
EGAF00007846429	fastq.gz	5.3 GB
EGAF00007846430	fastq.gz	4.8 GB
EGAF00007846431	fastq.gz	4.9 GB
EGAF00007846434	fastq.gz	5.2 GB
EGAF00007846435	fastq.gz	5.3 GB
EGAF00007846440	fastq.gz	3.7 GB
EGAF00007846441	fastq.gz	3.7 GB
EGAF00007846444	fastq.gz	4.2 GB
EGAF00007846445	fastq.gz	4.2 GB
EGAF00007846446	fastq.gz	4.2 GB
EGAF00007846447	fastq.gz	4.2 GB
EGAF00007846450	fastq.gz	2.7 GB
EGAF00007846451	fastq.gz	2.7 GB
EGAF00007846558	fastq.gz	3.2 GB
EGAF00007846559	fastq.gz	3.3 GB
EGAF00007846560	fastq.gz	3.3 GB
EGAF00007846561	fastq.gz	3.5 GB
EGAF00007846562	fastq.gz	3.9 GB
EGAF00007846563	fastq.gz	4.1 GB
EGAF00007846564	fastq.gz	2.5 GB
EGAF00007846565	fastq.gz	2.6 GB
EGAF00007846566	fastq.gz	5.5 GB
EGAF00007846567	fastq.gz	5.8 GB
EGAF00007846568	fastq.gz	2.2 GB
EGAF00007846569	fastq.gz	2.2 GB
EGAF00007846570	fastq.gz	4.7 GB
EGAF00007846571	fastq.gz	4.8 GB
EGAF00007846572	fastq.gz	2.3 GB
EGAF00007846573	fastq.gz	2.3 GB
EGAF00007846574	fastq.gz	6.8 GB
EGAF00007846575	fastq.gz	7.1 GB
EGAF00007846576	fastq.gz	4.1 GB
EGAF00007846577	fastq.gz	4.2 GB
EGAF00007846578	fastq.gz	4.4 GB
EGAF00007846579	fastq.gz	4.5 GB
EGAF00007846580	fastq.gz	3.9 GB
EGAF00007846581	fastq.gz	4.0 GB
EGAF00007846582	fastq.gz	4.3 GB
EGAF00007846583	fastq.gz	4.5 GB
46 Files (195.8 GB)