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RNA sequencing

RNAseq of 45 high-grade serous ovarian cancer tumour samples. Libraries were generated using the NEB Ultra II Directional RNA library Prep kit with polyA enrichment. Libraries were sequenced as paired-end 50 or 100bp on an Illumina NextSeq or NovaSeq.

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Peter MacCallum Cancer Centre Research Data Access Committee data access policy

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. 3. The User Institution agrees to protect the confidentiality and privacy of Research Participants in any research papers or publications that they prepare by using their best efforts to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the User Institution that may arise (whether directly or indirectly) in any way whatsoever from the User Institution’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Authorship guide and the Toronto Statement. This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research relating to the Data. 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Peter Mac within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Peter Mac prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Peter Mac as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Peter Mac may terminate this agreement by written notice to the User Institution at any time and for any reason or no reason. If this agreement is terminated, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Peter Mac. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected by Peter Mac or its delegate to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Victoria, Australia, and shall be subject to the exclusive jurisdiction of the Victorian courts. 20. The User Institution agrees that its rights and obligations hereunder are not assignable. 21. This agreement does not constitute any party the agent of another or imply that the parties intend constituting a partnership, joint venture or other form of association in which any party may be liable for the acts or omissions of the other.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006789 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007829287 fastq.gz 1.4 GB
EGAF00007829288 fastq.gz 1.4 GB
EGAF00007829289 fastq.gz 1.4 GB
EGAF00007829290 fastq.gz 1.5 GB
EGAF00007829291 fastq.gz 1.4 GB
EGAF00007829292 fastq.gz 1.5 GB
EGAF00007829293 fastq.gz 1.4 GB
EGAF00007829294 fastq.gz 1.5 GB
EGAF00007829295 fastq.gz 1.4 GB
EGAF00007829296 fastq.gz 1.5 GB
EGAF00007829297 fastq.gz 1.4 GB
EGAF00007829298 fastq.gz 1.5 GB
EGAF00007829299 fastq.gz 1.4 GB
EGAF00007829300 fastq.gz 1.5 GB
EGAF00007829301 fastq.gz 1.4 GB
EGAF00007829302 fastq.gz 1.5 GB
EGAF00007829303 fastq.gz 1.5 GB
EGAF00007829304 fastq.gz 1.5 GB
EGAF00007829305 fastq.gz 1.6 GB
EGAF00007829306 fastq.gz 1.6 GB
EGAF00007829307 fastq.gz 1.6 GB
EGAF00007829308 fastq.gz 1.6 GB
EGAF00007829309 fastq.gz 1.6 GB
EGAF00007829310 fastq.gz 1.6 GB
EGAF00007829311 fastq.gz 1.6 GB
EGAF00007829312 fastq.gz 1.6 GB
EGAF00007829313 fastq.gz 1.6 GB
EGAF00007829314 fastq.gz 1.6 GB
EGAF00007829315 fastq.gz 1.6 GB
EGAF00007829316 fastq.gz 1.6 GB
EGAF00007829317 fastq.gz 1.6 GB
EGAF00007829318 fastq.gz 1.7 GB
EGAF00007829319 fastq.gz 1.6 GB
EGAF00007829320 fastq.gz 1.7 GB
EGAF00007829321 fastq.gz 1.6 GB
EGAF00007829322 fastq.gz 1.7 GB
EGAF00007829323 fastq.gz 1.4 GB
EGAF00007829324 fastq.gz 1.5 GB
EGAF00007829325 fastq.gz 887.1 MB
EGAF00007829326 fastq.gz 900.8 MB
EGAF00007829327 fastq.gz 878.8 MB
EGAF00007829328 fastq.gz 883.7 MB
EGAF00007829329 fastq.gz 876.3 MB
EGAF00007829330 fastq.gz 882.9 MB
EGAF00007829331 fastq.gz 878.8 MB
EGAF00007829332 fastq.gz 888.1 MB
EGAF00007829333 fastq.gz 882.3 MB
EGAF00007829334 fastq.gz 893.0 MB
EGAF00007829335 fastq.gz 884.3 MB
EGAF00007829336 fastq.gz 893.0 MB
EGAF00007829337 fastq.gz 890.3 MB
EGAF00007829338 fastq.gz 903.9 MB
EGAF00007829339 fastq.gz 898.0 MB
EGAF00007829340 fastq.gz 914.4 MB
EGAF00007829341 fastq.gz 1.4 GB
EGAF00007829342 fastq.gz 1.5 GB
EGAF00007829343 fastq.gz 1.3 GB
EGAF00007829344 fastq.gz 1.3 GB
EGAF00007829345 fastq.gz 1.2 GB
EGAF00007829346 fastq.gz 1.2 GB
EGAF00007829347 fastq.gz 1.2 GB
EGAF00007829348 fastq.gz 1.3 GB
EGAF00007829349 fastq.gz 1.4 GB
EGAF00007829350 fastq.gz 1.4 GB
EGAF00007829351 fastq.gz 1.4 GB
EGAF00007829352 fastq.gz 1.4 GB
EGAF00007829353 fastq.gz 1.4 GB
EGAF00007829354 fastq.gz 1.4 GB
EGAF00007829355 fastq.gz 1.4 GB
EGAF00007829356 fastq.gz 1.4 GB
EGAF00007829357 fastq.gz 1.4 GB
EGAF00007829358 fastq.gz 1.4 GB
EGAF00007829359 fastq.gz 1.4 GB
EGAF00007829360 fastq.gz 1.4 GB
EGAF00007829361 fastq.gz 1.4 GB
EGAF00007829362 fastq.gz 1.4 GB
EGAF00007829363 fastq.gz 1.4 GB
EGAF00007829364 fastq.gz 1.4 GB
EGAF00007829365 fastq.gz 1.2 GB
EGAF00007829366 fastq.gz 1.2 GB
EGAF00007829367 fastq.gz 1.3 GB
EGAF00007829368 fastq.gz 1.3 GB
EGAF00007829369 fastq.gz 1.2 GB
EGAF00007829370 fastq.gz 1.3 GB
EGAF00007829371 fastq.gz 1.2 GB
EGAF00007829372 fastq.gz 1.2 GB
EGAF00007829373 fastq.gz 1.4 GB
EGAF00007829374 fastq.gz 1.4 GB
EGAF00007829375 fastq.gz 971.8 MB
EGAF00007829376 fastq.gz 965.0 MB
EGAF00007829377 fastq.gz 963.7 MB
EGAF00007829378 fastq.gz 945.5 MB
EGAF00007829379 fastq.gz 961.4 MB
EGAF00007829380 fastq.gz 946.7 MB
EGAF00007829381 fastq.gz 964.6 MB
EGAF00007829382 fastq.gz 953.8 MB
EGAF00007829383 fastq.gz 966.7 MB
EGAF00007829384 fastq.gz 958.2 MB
EGAF00007829385 fastq.gz 969.6 MB
EGAF00007829386 fastq.gz 959.0 MB
EGAF00007829387 fastq.gz 975.2 MB
EGAF00007829388 fastq.gz 969.6 MB
EGAF00007829389 fastq.gz 984.1 MB
EGAF00007829390 fastq.gz 983.6 MB
EGAF00007829391 fastq.gz 1.2 GB
EGAF00007829392 fastq.gz 1.3 GB
EGAF00007829393 fastq.gz 786.0 MB
EGAF00007829394 fastq.gz 790.2 MB
EGAF00007829395 fastq.gz 775.7 MB
EGAF00007829396 fastq.gz 777.2 MB
EGAF00007829397 fastq.gz 775.3 MB
EGAF00007829398 fastq.gz 777.3 MB
EGAF00007829399 fastq.gz 778.1 MB
EGAF00007829400 fastq.gz 782.2 MB
EGAF00007829401 fastq.gz 780.4 MB
EGAF00007829402 fastq.gz 786.7 MB
EGAF00007829403 fastq.gz 781.6 MB
EGAF00007829404 fastq.gz 785.9 MB
EGAF00007829405 fastq.gz 785.4 MB
EGAF00007829406 fastq.gz 794.3 MB
EGAF00007829407 fastq.gz 791.6 MB
EGAF00007829408 fastq.gz 802.6 MB
EGAF00007829409 fastq.gz 1.4 GB
EGAF00007829410 fastq.gz 1.5 GB
EGAF00007829411 fastq.gz 1.8 GB
EGAF00007829412 fastq.gz 1.9 GB
EGAF00007829413 fastq.gz 1.8 GB
EGAF00007829414 fastq.gz 1.8 GB
EGAF00007829415 fastq.gz 1.1 GB
EGAF00007829416 fastq.gz 1.1 GB
EGAF00007829417 fastq.gz 1.1 GB
EGAF00007829418 fastq.gz 1.1 GB
EGAF00007829419 fastq.gz 1.2 GB
EGAF00007829420 fastq.gz 1.3 GB
EGAF00007829421 fastq.gz 892.5 MB
EGAF00007829422 fastq.gz 921.8 MB
EGAF00007829423 fastq.gz 885.7 MB
EGAF00007829424 fastq.gz 906.0 MB
EGAF00007829425 fastq.gz 883.8 MB
EGAF00007829426 fastq.gz 904.8 MB
EGAF00007829427 fastq.gz 886.6 MB
EGAF00007829428 fastq.gz 910.5 MB
EGAF00007829429 fastq.gz 890.4 MB
EGAF00007829430 fastq.gz 915.2 MB
EGAF00007829431 fastq.gz 892.9 MB
EGAF00007829432 fastq.gz 915.5 MB
EGAF00007829433 fastq.gz 896.8 MB
EGAF00007829434 fastq.gz 924.9 MB
EGAF00007829435 fastq.gz 904.5 MB
EGAF00007829436 fastq.gz 935.5 MB
EGAF00007829437 fastq.gz 1.3 GB
EGAF00007829438 fastq.gz 1.4 GB
EGAF00007829439 fastq.gz 1.1 GB
EGAF00007829440 fastq.gz 1.2 GB
EGAF00007829441 fastq.gz 787.3 MB
EGAF00007829442 fastq.gz 810.6 MB
EGAF00007829443 fastq.gz 1.7 GB
EGAF00007829444 fastq.gz 1.8 GB
EGAF00007829445 fastq.gz 1.2 GB
EGAF00007829446 fastq.gz 1.2 GB
EGAF00007829447 fastq.gz 1.0 GB
EGAF00007829448 fastq.gz 1.1 GB
EGAF00007829449 fastq.gz 2.2 GB
EGAF00007829450 fastq.gz 2.3 GB
EGAF00007829451 fastq.gz 1.1 GB
EGAF00007829452 fastq.gz 1.1 GB
EGAF00007829453 fastq.gz 892.5 MB
EGAF00007829454 fastq.gz 935.5 MB
EGAF00007829455 fastq.gz 1.1 GB
EGAF00007829456 fastq.gz 1.1 GB
EGAF00007829457 fastq.gz 2.7 GB
EGAF00007829458 fastq.gz 2.9 GB
EGAF00007829459 fastq.gz 1.3 GB
EGAF00007829460 fastq.gz 1.4 GB
EGAF00007829461 fastq.gz 973.5 MB
EGAF00007829462 fastq.gz 1.0 GB
EGAF00007829463 fastq.gz 898.9 MB
EGAF00007829464 fastq.gz 931.9 MB
EGAF00007829465 fastq.gz 868.4 MB
EGAF00007829466 fastq.gz 899.4 MB
EGAF00007829467 fastq.gz 1.0 GB
EGAF00007829468 fastq.gz 1.1 GB
EGAF00007829469 fastq.gz 1.2 GB
EGAF00007829470 fastq.gz 1.3 GB
EGAF00007829471 fastq.gz 1.8 GB
EGAF00007829472 fastq.gz 1.8 GB
EGAF00007829473 fastq.gz 1.7 GB
EGAF00007829474 fastq.gz 1.8 GB
188 Files (231.2 GB)