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WGS data from NEN patient derived tumor organoids (PDTOs) and matched parental tumors - UMCU/NKI

The dataset includes cram files from WGS of 6 NEN tumors or metastases and matched PDTOs. For all tumors, cram files from WGS of either matched normal tissue or matched blood from the corresponding patients are included. Analysis VCF files are also included in the dataset. The sequencing was done with a NovaSeq 6000 instrument.

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Neuroendocrine neoplasm organoids project's data access policy - UMCU/NKI samples

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact dacdbg@umcutrecht.nl Following DUO codes are applied to the UMCU/NKI datasets: DUO_0000007; MONDO:0004992

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005752 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005686458 cram 69.1 GB
EGAF00005686472 cram 71.7 GB
EGAF00005686473 cram 128.3 GB
EGAF00005686474 cram 124.3 GB
EGAF00005686475 cram 52.2 GB
EGAF00005686476 cram 181.1 GB
EGAF00005686477 cram 173.3 GB
EGAF00005686478 cram 202.5 GB
EGAF00005686486 cram 63.7 GB
EGAF00005686487 cram 181.7 GB
EGAF00005686488 cram 164.5 GB
EGAF00005686489 cram 210.8 GB
EGAF00005686491 cram 107.3 GB
EGAF00005686492 cram 102.7 GB
EGAF00005686497 cram 65.7 GB
EGAF00005686498 cram 97.2 GB
EGAF00005686499 cram 110.2 GB
EGAF00005686500 cram 132.0 GB
EGAF00005686501 cram 144.2 GB
EGAF00005686502 cram 90.6 GB
EGAF00005687398 crai 5.5 MB
EGAF00005687399 crai 4.8 MB
EGAF00005687400 crai 3.4 MB
EGAF00005687403 crai 3.6 MB
EGAF00005687405 crai 5.1 MB
EGAF00005687407 crai 3.4 MB
EGAF00005687409 crai 2.6 MB
EGAF00005687410 crai 4.1 MB
EGAF00005687412 crai 4.6 MB
EGAF00005687415 crai 3.5 MB
EGAF00005687416 crai 4.6 MB
EGAF00005687419 crai 1.8 MB
EGAF00005687420 crai 1.8 MB
EGAF00005687422 crai 3.6 MB
EGAF00005687424 crai 3.1 MB
EGAF00005687426 crai 4.4 MB
EGAF00005687427 crai 3.4 MB
EGAF00005687428 crai 1.8 MB
EGAF00005687430 crai 1.4 MB
EGAF00005687431 crai 1.7 MB
EGAF00006881720 vcf.gz 2.9 MB
EGAF00006881721 vcf.gz 5.3 MB
EGAF00006881724 vcf.gz 7.5 MB
EGAF00006881725 vcf.gz 1.9 MB
EGAF00006881726 vcf.gz 1.7 MB
EGAF00006881727 vcf.gz 2.3 MB
46 Files (2.5 TB)