scRNA-seq of placental immune cells

scRNA-seq analysis of 384 placental immune cells

10/02/2023
1 sample
DAC: EGAC00001003080
Technology: Illumina NovaSeq 6000

Access Policy1 Study Files

Metadata

Request Access

Data access policy for HLA-DR is absent in primitive macrophages through epigenetic silencing of master regulator CIITA

Policy for processing data access requests This policy describes how the HLA-DR macrophage Data Access Committee (DAC) will process requests for datasets stored in the European Genome-phenome Archive (EGA), when those datasets are made available by manuscripts that specifically reference this policy. Purpose 1. To ensure that applicants are qualified investigators, affiliated with an academic, non- profit, or government research organization. 2. To ensure that users of the data agree to comply with applicable laws, including requirements as outlined in any governing consent and appropriate ethical approvals, along with any restrictions for the data in question. General principles Introduction The DAC will consider applications for access to datasets stored in the EGA when authorized to do so in accordance with this policy. Access to data will be granted to qualified researchers for appropriate use. A qualified researcher refers to a scientist who is employed, or legitimately affiliated with an academic, non-profit, or government research organization. Access to data will be granted to researchers for appropriate use and will be governed by the provisions and terms contained in the Data Access Agreement and consistent with an informed consent (if applicable). The DAC is concerned only with access to the data stored within the EGA with this DAC as the designated data access committee. Access is conditional upon availability of data and a signed agreement governing issues related to publication, data use, data storage, data disposal, ethical approval, and confidentiality. Application procedure To request access to data from the EGA, you will be asked to complete a basic application form and to agree to the terms and conditions laid out in the Data Access Agreement (DAA). The DAA must be signed by both a representative with institutional authority to sign on behalf of your organization, and the principal investigator responsible for the research project. You will also be requested to list personnel who will be granted access to the data for the purposes of the research project. If your application is successful, you will be asked to designate a “registered user”, under the authority of the principal investigator, who will be issued with a username and password by the EGA to enable access to the database. The DAC will consider applications that include named collaborators, but each institution must sign a separate DAA. Should you wish to share the data with additional collaborators not previously approved, they must make a separate application for access to the data. You agree to use the data only for the approved purpose and project described in your application; use of the data for a new purpose or new or expanded project will require a new application and approval. Assessment criteria Each application will be assessed to determine if: ● it has been submitted by a qualified researcher or researchers, embedded in a recognized research institution that can provide institutional responsibility for appropriate research governance ● the project described constitutes “biomedical research” in the context of the consent process, and is likely to be understood as such by the sample donors ● it breaches any of the ethical permissions or restrictions in the consent forms for any component cohort or collection The DAC will use these practices in its assessment: ● The DAC explicitly does NOT attempt to peer review the scientific quality of proposals. However, it does ask for a brief summary of the research to be undertaken, in order to judge whether it falls within the scope of the consents. Reporting The DAC may periodically report publicly on the requests received and their disposition, including reasons for access refusal. Acknowledgments Purpose adapted from the Blueprint Data Access Committee Terms of Reference. General principles adapted from the Blueprint Data Access Committee General Principles.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001006981	HLA-DR is absent in primitive macrophages through epigenetic silencing of master regulator CIITA	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00007917480	fq.gz	14.2 MB	Report
EGAF00007917481	fq.gz	14.0 MB	Report
EGAF00007917482	fq.gz	31.9 MB	Report
EGAF00007917483	fq.gz	31.4 MB	Report
EGAF00007917484	fq.gz	37.6 MB	Report
EGAF00007917485	fq.gz	38.1 MB	Report
EGAF00007917486	fq.gz	37.6 MB	Report
EGAF00007917487	fq.gz	37.8 MB	Report
EGAF00007917488	fq.gz	42.6 MB	Report
EGAF00007917489	fq.gz	42.7 MB	Report
EGAF00007917490	fq.gz	284.2 kB	Report
EGAF00007917491	fq.gz	255.6 kB	Report
EGAF00007917492	fq.gz	31.8 MB	Report
EGAF00007917493	fq.gz	31.1 MB	Report
EGAF00007917494	fq.gz	38.3 MB	Report
EGAF00007917495	fq.gz	38.9 MB	Report
EGAF00007917496	fq.gz	23.2 MB	Report
EGAF00007917497	fq.gz	23.3 MB	Report
EGAF00007917498	fq.gz	16.8 MB	Report
EGAF00007917499	fq.gz	16.3 MB	Report
EGAF00007917500	fq.gz	36.4 MB	Report
EGAF00007917501	fq.gz	36.9 MB	Report
EGAF00007917502	fq.gz	243.5 kB	Report
EGAF00007917503	fq.gz	241.8 kB	Report
EGAF00007917504	fq.gz	297.9 kB	Report
EGAF00007917505	fq.gz	299.9 kB	Report
EGAF00007917506	fq.gz	28.4 MB	Report
EGAF00007917507	fq.gz	27.2 MB	Report
EGAF00007917508	fq.gz	25.0 MB	Report
EGAF00007917509	fq.gz	24.2 MB	Report
EGAF00007917510	fq.gz	37.6 MB	Report
EGAF00007917511	fq.gz	38.2 MB	Report
EGAF00007917512	fq.gz	33.8 MB	Report
EGAF00007917513	fq.gz	35.0 MB	Report
EGAF00007917514	fq.gz	37.6 MB	Report
EGAF00007917515	fq.gz	38.6 MB	Report
EGAF00007917516	fq.gz	25.3 MB	Report
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EGAF00007917518	fq.gz	40.4 MB	Report
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EGAF00007917522	fq.gz	39.6 MB	Report
EGAF00007917523	fq.gz	40.5 MB	Report
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EGAF00007917538	fq.gz	315.2 MB	Report
EGAF00007917539	fq.gz	327.2 MB	Report
EGAF00007917540	fq.gz	131.4 MB	Report
EGAF00007917541	fq.gz	133.5 MB	Report
EGAF00007917542	fq.gz	163.3 MB	Report
EGAF00007917543	fq.gz	150.3 MB	Report
EGAF00007917544	fq.gz	133.5 MB	Report
EGAF00007917545	fq.gz	139.4 MB	Report
EGAF00007917546	fq.gz	128.1 MB	Report
EGAF00007917547	fq.gz	131.4 MB	Report
EGAF00007917548	fq.gz	147.3 MB	Report
EGAF00007917549	fq.gz	156.5 MB	Report
EGAF00007917550	fq.gz	150.1 MB	Report
EGAF00007917551	fq.gz	151.5 MB	Report
EGAF00007917552	fq.gz	109.9 MB	Report
EGAF00007917553	fq.gz	110.8 MB	Report
EGAF00007917554	fq.gz	181.2 MB	Report
EGAF00007917555	fq.gz	190.2 MB	Report
EGAF00007917556	fq.gz	177.7 MB	Report
EGAF00007917557	fq.gz	186.8 MB	Report
EGAF00007917558	fq.gz	149.6 MB	Report
EGAF00007917559	fq.gz	155.1 MB	Report
EGAF00007917560	fq.gz	156.0 MB	Report
EGAF00007917561	fq.gz	168.3 MB	Report
EGAF00007917562	fq.gz	131.2 MB	Report
EGAF00007917563	fq.gz	137.3 MB	Report
EGAF00007917564	fq.gz	144.4 MB	Report
EGAF00007917565	fq.gz	150.0 MB	Report
EGAF00007917566	fq.gz	131.1 MB	Report
EGAF00007917567	fq.gz	134.1 MB	Report
EGAF00007917568	fq.gz	111.6 MB	Report
EGAF00007917569	fq.gz	116.7 MB	Report
EGAF00007917570	fq.gz	139.2 MB	Report
EGAF00007917571	fq.gz	148.7 MB	Report
EGAF00007917572	fq.gz	157.1 MB	Report
EGAF00007917573	fq.gz	166.3 MB	Report
EGAF00007917574	fq.gz	172.3 MB	Report
EGAF00007917575	fq.gz	181.2 MB	Report
EGAF00007917576	fq.gz	166.1 MB	Report
EGAF00007917577	fq.gz	176.5 MB	Report
EGAF00007917578	fq.gz	194.5 MB	Report
EGAF00007917579	fq.gz	203.9 MB	Report
EGAF00007917580	fq.gz	196.1 MB	Report
EGAF00007917581	fq.gz	204.4 MB	Report
EGAF00007917582	fq.gz	104.4 MB	Report
EGAF00007917583	fq.gz	107.3 MB	Report
EGAF00007917584	fq.gz	129.7 MB	Report
EGAF00007917585	fq.gz	137.2 MB	Report
EGAF00007917586	fq.gz	198.2 MB	Report
EGAF00007917587	fq.gz	211.7 MB	Report
EGAF00007917588	fq.gz	167.9 MB	Report
EGAF00007917589	fq.gz	176.9 MB	Report
EGAF00007917590	fq.gz	236.7 MB	Report
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EGAF00007917592	fq.gz	190.4 MB	Report
EGAF00007917593	fq.gz	204.4 MB	Report
EGAF00007917594	fq.gz	149.7 MB	Report
EGAF00007917595	fq.gz	160.0 MB	Report
EGAF00007917596	fq.gz	138.9 MB	Report
EGAF00007917597	fq.gz	150.0 MB	Report
EGAF00007917598	fq.gz	131.1 MB	Report
EGAF00007917599	fq.gz	137.2 MB	Report
EGAF00007917600	fq.gz	108.3 MB	Report
EGAF00007917601	fq.gz	101.5 MB	Report
EGAF00007917602	fq.gz	108.2 MB	Report
EGAF00007917603	fq.gz	107.0 MB	Report
EGAF00007917604	fq.gz	145.9 MB	Report
EGAF00007917605	fq.gz	154.0 MB	Report
EGAF00007917606	fq.gz	180.6 MB	Report
EGAF00007917607	fq.gz	179.8 MB	Report
EGAF00007917608	fq.gz	135.9 MB	Report
EGAF00007917609	fq.gz	143.9 MB	Report
EGAF00007917610	fq.gz	155.2 MB	Report
EGAF00007917611	fq.gz	156.1 MB	Report
EGAF00007917612	fq.gz	160.4 MB	Report
EGAF00007917613	fq.gz	170.5 MB	Report
EGAF00007917614	fq.gz	149.1 MB	Report
EGAF00007917615	fq.gz	152.4 MB	Report
EGAF00007917616	fq.gz	91.0 MB	Report
EGAF00007917617	fq.gz	87.8 MB	Report
EGAF00007917618	fq.gz	141.0 MB	Report
EGAF00007917619	fq.gz	148.1 MB	Report
EGAF00007917620	fq.gz	173.9 MB	Report
EGAF00007917621	fq.gz	177.7 MB	Report
EGAF00007917622	fq.gz	141.1 MB	Report
EGAF00007917623	fq.gz	150.1 MB	Report
EGAF00007917624	fq.gz	160.2 MB	Report
EGAF00007917625	fq.gz	169.5 MB	Report
EGAF00007917626	fq.gz	159.1 MB	Report
EGAF00007917627	fq.gz	167.5 MB	Report
EGAF00007917628	fq.gz	159.3 MB	Report
EGAF00007917629	fq.gz	162.6 MB	Report
EGAF00007917630	fq.gz	123.6 MB	Report
EGAF00007917631	fq.gz	128.0 MB	Report
EGAF00007917632	fq.gz	102.3 MB	Report
EGAF00007917633	fq.gz	103.2 MB	Report
EGAF00007917634	fq.gz	133.9 MB	Report
EGAF00007917635	fq.gz	143.2 MB	Report
EGAF00007917636	fq.gz	193.5 MB	Report
EGAF00007917637	fq.gz	204.3 MB	Report
EGAF00007917638	fq.gz	138.8 MB	Report
EGAF00007917639	fq.gz	148.0 MB	Report
EGAF00007917640	fq.gz	194.1 MB	Report
EGAF00007917641	fq.gz	203.6 MB	Report
EGAF00007917642	fq.gz	156.2 MB	Report
EGAF00007917643	fq.gz	166.4 MB	Report
EGAF00007917644	fq.gz	135.7 MB	Report
EGAF00007917645	fq.gz	134.8 MB	Report
EGAF00007917646	fq.gz	103.6 MB	Report
EGAF00007917647	fq.gz	107.9 MB	Report
EGAF00007917648	fq.gz	152.7 MB	Report
EGAF00007917649	fq.gz	162.2 MB	Report
EGAF00007917650	fq.gz	171.2 MB	Report
EGAF00007917651	fq.gz	176.4 MB	Report
EGAF00007917652	fq.gz	175.7 MB	Report
EGAF00007917653	fq.gz	179.6 MB	Report
EGAF00007917654	fq.gz	207.5 MB	Report
EGAF00007917655	fq.gz	220.4 MB	Report
EGAF00007917656	fq.gz	235.0 MB	Report
EGAF00007917657	fq.gz	238.6 MB	Report
EGAF00007917658	fq.gz	202.5 MB	Report
EGAF00007917659	fq.gz	206.7 MB	Report
EGAF00007917660	fq.gz	161.5 MB	Report
EGAF00007917661	fq.gz	161.4 MB	Report
EGAF00007917662	fq.gz	154.3 MB	Report
EGAF00007917663	fq.gz	158.0 MB	Report
EGAF00007917664	fq.gz	149.6 MB	Report
EGAF00007917665	fq.gz	158.8 MB	Report
EGAF00007917666	fq.gz	136.2 MB	Report
EGAF00007917667	fq.gz	145.4 MB	Report
EGAF00007917668	fq.gz	147.1 MB	Report
EGAF00007917669	fq.gz	154.8 MB	Report
EGAF00007917670	fq.gz	121.1 MB	Report
EGAF00007917671	fq.gz	128.1 MB	Report
EGAF00007917672	fq.gz	162.3 MB	Report
EGAF00007917673	fq.gz	171.4 MB	Report
EGAF00007917674	fq.gz	176.9 MB	Report
EGAF00007917675	fq.gz	187.6 MB	Report
EGAF00007917676	fq.gz	144.6 MB	Report
EGAF00007917677	fq.gz	146.8 MB	Report
EGAF00007917678	fq.gz	187.2 MB	Report
EGAF00007917679	fq.gz	197.2 MB	Report
EGAF00007917680	fq.gz	144.6 MB	Report
EGAF00007917681	fq.gz	152.4 MB	Report
EGAF00007917682	fq.gz	161.5 MB	Report
EGAF00007917683	fq.gz	169.1 MB	Report
EGAF00007917684	fq.gz	170.1 MB	Report
EGAF00007917685	fq.gz	175.7 MB	Report
EGAF00007917686	fq.gz	146.3 MB	Report
EGAF00007917687	fq.gz	154.8 MB	Report
EGAF00007917688	fq.gz	202.4 MB	Report
EGAF00007917689	fq.gz	209.1 MB	Report
EGAF00007917690	fq.gz	165.8 MB	Report
EGAF00007917691	fq.gz	170.6 MB	Report
EGAF00007917692	fq.gz	143.7 MB	Report
EGAF00007917693	fq.gz	144.6 MB	Report
EGAF00007917694	fq.gz	135.8 MB	Report
EGAF00007917695	fq.gz	137.8 MB	Report
EGAF00007917696	fq.gz	108.8 MB	Report
EGAF00007917697	fq.gz	113.9 MB	Report
EGAF00007917698	fq.gz	131.0 MB	Report
EGAF00007917699	fq.gz	138.8 MB	Report
EGAF00007917700	fq.gz	124.6 MB	Report
EGAF00007917701	fq.gz	129.6 MB	Report
EGAF00007917702	fq.gz	175.9 MB	Report
EGAF00007917703	fq.gz	187.0 MB	Report
EGAF00007917704	fq.gz	184.4 MB	Report
EGAF00007917705	fq.gz	195.9 MB	Report
EGAF00007917706	fq.gz	166.2 MB	Report
EGAF00007917707	fq.gz	170.4 MB	Report
EGAF00007917708	fq.gz	151.9 MB	Report
EGAF00007917709	fq.gz	154.3 MB	Report
EGAF00007917710	fq.gz	144.0 MB	Report
EGAF00007917711	fq.gz	151.8 MB	Report
EGAF00007917712	fq.gz	81.6 MB	Report
EGAF00007917713	fq.gz	86.5 MB	Report
EGAF00007917714	fq.gz	112.1 MB	Report
EGAF00007917715	fq.gz	117.7 MB	Report
EGAF00007917716	fq.gz	126.7 MB	Report
EGAF00007917717	fq.gz	131.8 MB	Report
EGAF00007917718	fq.gz	143.8 MB	Report
EGAF00007917719	fq.gz	153.9 MB	Report
EGAF00007917720	fq.gz	135.4 MB	Report
EGAF00007917721	fq.gz	142.8 MB	Report
EGAF00007917722	fq.gz	190.7 MB	Report
EGAF00007917723	fq.gz	201.1 MB	Report
EGAF00007917724	fq.gz	125.3 MB	Report
EGAF00007917725	fq.gz	128.5 MB	Report
EGAF00007917726	fq.gz	126.9 MB	Report
EGAF00007917727	fq.gz	133.9 MB	Report
EGAF00007917728	fq.gz	188.0 MB	Report
EGAF00007917729	fq.gz	202.0 MB	Report
EGAF00007917730	fq.gz	156.7 MB	Report
EGAF00007917731	fq.gz	165.4 MB	Report
EGAF00007917732	fq.gz	165.0 MB	Report
EGAF00007917733	fq.gz	171.0 MB	Report
EGAF00007917734	fq.gz	173.4 MB	Report
EGAF00007917735	fq.gz	184.6 MB	Report
EGAF00007917736	fq.gz	215.5 MB	Report
EGAF00007917737	fq.gz	198.9 MB	Report
EGAF00007917738	fq.gz	180.8 MB	Report
EGAF00007917739	fq.gz	189.0 MB	Report
EGAF00007917740	fq.gz	160.9 MB	Report
EGAF00007917741	fq.gz	163.0 MB	Report
EGAF00007917742	fq.gz	145.9 MB	Report
EGAF00007917743	fq.gz	153.2 MB	Report
EGAF00007917744	fq.gz	113.7 MB	Report
EGAF00007917745	fq.gz	120.8 MB	Report
EGAF00007917746	fq.gz	142.3 MB	Report
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EGAF00007917748	fq.gz	136.2 MB	Report
EGAF00007917749	fq.gz	143.3 MB	Report
EGAF00007917750	fq.gz	231.0 MB	Report
EGAF00007917751	fq.gz	247.1 MB	Report
EGAF00007917752	fq.gz	126.5 MB	Report
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EGAF00007917758	fq.gz	107.5 MB	Report
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EGAF00007917949	fq.gz	484.8 MB	Report
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EGAF00007917954	fq.gz	611.1 MB	Report
EGAF00007917955	fq.gz	388.7 MB	Report
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EGAF00007917957	fq.gz	381.2 MB	Report
EGAF00007917958	fq.gz	370.6 MB	Report
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EGAF00007918000	fq.gz	321.6 MB	Report
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EGAF00007918390	fq.gz	136.8 MB	Report
EGAF00007918391	fq.gz	166.2 MB	Report
EGAF00007918392	fq.gz	171.4 MB	Report
EGAF00007918393	fq.gz	186.1 MB	Report
EGAF00007918394	fq.gz	186.4 MB	Report
EGAF00007918395	fq.gz	136.1 MB	Report
EGAF00007918396	fq.gz	140.2 MB	Report
EGAF00007918397	fq.gz	183.5 MB	Report
EGAF00007918398	fq.gz	196.5 MB	Report
EGAF00007918399	fq.gz	169.4 MB	Report
EGAF00007918400	fq.gz	178.1 MB	Report
EGAF00007918401	fq.gz	157.3 MB	Report
EGAF00007918402	fq.gz	164.8 MB	Report
EGAF00007918403	fq.gz	151.4 MB	Report
EGAF00007918404	fq.gz	156.3 MB	Report
EGAF00007918405	fq.gz	116.1 MB	Report
EGAF00007918406	fq.gz	121.7 MB	Report
EGAF00007918407	fq.gz	127.0 MB	Report
EGAF00007918408	fq.gz	132.7 MB	Report
EGAF00007918409	fq.gz	170.2 MB	Report
EGAF00007918410	fq.gz	173.8 MB	Report
EGAF00007918411	fq.gz	151.8 MB	Report
EGAF00007918412	fq.gz	152.5 MB	Report
EGAF00007918413	fq.gz	189.5 MB	Report
EGAF00007918414	fq.gz	201.1 MB	Report
EGAF00007918415	fq.gz	186.9 MB	Report
EGAF00007918416	fq.gz	198.5 MB	Report
EGAF00007918417	fq.gz	118.1 MB	Report
EGAF00007918418	fq.gz	122.7 MB	Report
EGAF00007918419	fq.gz	213.5 MB	Report
EGAF00007918420	fq.gz	221.5 MB	Report
EGAF00007918421	fq.gz	189.4 MB	Report
EGAF00007918422	fq.gz	197.7 MB	Report
EGAF00007918423	fq.gz	145.4 MB	Report
EGAF00007918424	fq.gz	154.0 MB	Report
EGAF00007918425	fq.gz	150.9 MB	Report
EGAF00007918426	fq.gz	160.4 MB	Report
767 Files (126.8 GB)