About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Myeloid-specific KDM6B inhibition sensitizes Glioblastoma to PD1 blockade

This data set include FASTQ files for five experiments: Human scRNA-Seq data (6 samples), Human Visium spatial transcriptomic data (3 samples), Mouse scRNA-seq data (4 samples), Mouse scATAC-seq data (2 samples), Mouse ChIP-seq data (8 samples). For the mouse scATAC-seq data (2 samples), there are originally three FASTQ files, R1, R2 and R3 files. The R1 and R2 FASTQ files were merged into one larger file ("R1R2") per sample for submission as paired-end sequencing setting to follow the EGA guidelines. They can be split into individual R1 and R2 files in order to be processed by Cell Ranger software. The files with IC1 suffix are CHIP-seq Input control for anti-KDM6B antibody pull down experiments and the files with IC2 suffix are CHIP-seq Input control for anti-H3K27ME3 antibody pull down experiments in murine model.

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All data will be firewalled and approved by the Data Access Committee per institutional agreement prior to release.

MDACC data policy.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007002 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007945885 fastq.gz 1.6 GB Report
EGAF00007945886 fastq.gz 2.0 GB Report
EGAF00007945887 fastq.gz 1.7 GB Report
EGAF00007945888 fastq.gz 1.4 GB Report
EGAF00007945889 fastq.gz 1.5 GB Report
EGAF00007945890 fastq.gz 3.4 GB Report
EGAF00007945891 fastq.gz 21.4 GB Report
EGAF00007945892 fastq.gz 51.3 GB Report
EGAF00007945893 fastq.gz 38.9 GB Report
EGAF00007945894 fastq.gz 29.5 GB Report
EGAF00007945895 fastq.gz 41.4 GB Report
EGAF00007945896 fastq.gz 26.8 GB Report
EGAF00007945897 fastq.gz 7.1 GB Report
EGAF00007945898 fastq.gz 17.2 GB Report
EGAF00007945899 fastq.gz 1.5 GB Report
EGAF00007945900 fastq.gz 1.8 GB Report
EGAF00007945901 fastq.gz 1.9 GB Report
EGAF00007945902 fastq.gz 1.4 GB Report
EGAF00007945903 fastq.gz 21.0 GB Report
EGAF00007945904 fastq.gz 50.9 GB Report
EGAF00007945905 fastq.gz 6.5 GB Report
EGAF00007945906 fastq.gz 15.2 GB Report
EGAF00007945907 fastq.gz 6.0 GB Report
EGAF00007945908 fastq.gz 14.0 GB Report
EGAF00007945909 fastq.gz 7.2 GB Report
EGAF00007945910 fastq.gz 17.1 GB Report
EGAF00007945911 fastq.gz 10.1 GB Report
EGAF00007945912 fastq.gz 23.3 GB Report
EGAF00007945913 fastq.gz 6.6 GB Report
EGAF00007945914 fastq.gz 15.1 GB Report
EGAF00007945915 fastq.gz 5.9 GB Report
EGAF00007945916 fastq.gz 7.7 GB Report
EGAF00007945917 fastq.gz 6.2 GB Report
EGAF00007945918 fastq.gz 8.9 GB Report
EGAF00007945919 fastq.gz 6.1 GB Report
EGAF00007945920 fastq.gz 8.9 GB Report
EGAF00007945921 fastq.gz 6.2 GB Report
EGAF00007945922 fastq.gz 9.3 GB Report
38 Files (504.3 GB)