About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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VRK3 depletion in Pontine Diffuse Midline Glioma DMG-K27 altered cells

In order to investigate possible mechanisms underlying the phenotype of cell fitness decline observed following decrease of VRK3 in pontine DMG-K27 altered cells 7, we examined differences in global gene expression. RNA-seq was performed 44h and 60h post-transduction with two distinct shRNAs targeting VRK3 to be able to evaluate the early impact of VRK3 knock-down (KD) in four independent in vitro models of DMG

Request Access

This data use modifier indicates that use of the data is limited to not-for-profit organizations. This data use modifier indicates that use of the data is limited to not-for-profit use. This requirement indicates that requestor agrees not to publish results of studies until a specific date. This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s).

DUO:0000045 DUO:0000046 DUO:0000024 DUO:0000020

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007047 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007956472 fastq.gz 4.1 GB Report
EGAF00007956473 fastq.gz 4.3 GB Report
EGAF00007956474 fastq.gz 1.9 GB Report
EGAF00007956475 fastq.gz 1.9 GB Report
EGAF00007956476 fastq.gz 2.9 GB Report
EGAF00007956477 fastq.gz 3.0 GB Report
EGAF00007956478 fastq.gz 2.1 GB Report
EGAF00007956479 fastq.gz 2.1 GB Report
EGAF00007956480 fastq.gz 2.9 GB Report
EGAF00007956481 fastq.gz 2.9 GB Report
EGAF00007956482 fastq.gz 2.4 GB Report
EGAF00007956483 fastq.gz 2.5 GB Report
EGAF00007956484 fastq.gz 3.4 GB Report
EGAF00007956485 fastq.gz 3.5 GB Report
EGAF00007956486 fastq.gz 2.4 GB Report
EGAF00007956487 fastq.gz 2.4 GB Report
EGAF00007956488 fastq.gz 1.4 GB Report
EGAF00007956489 fastq.gz 1.5 GB Report
EGAF00007956490 fastq.gz 1.7 GB Report
EGAF00007956491 fastq.gz 1.8 GB Report
EGAF00007956492 fastq.gz 3.0 GB Report
EGAF00007956493 fastq.gz 3.0 GB Report
EGAF00007956494 fastq.gz 3.0 GB Report
EGAF00007956495 fastq.gz 3.0 GB Report
EGAF00007956496 fastq.gz 2.3 GB Report
EGAF00007956497 fastq.gz 2.4 GB Report
EGAF00007956498 fastq.gz 2.5 GB Report
EGAF00007956499 fastq.gz 2.6 GB Report
EGAF00007956500 fastq.gz 3.8 GB Report
EGAF00007956501 fastq.gz 3.9 GB Report
EGAF00007956502 fastq.gz 1.4 GB Report
EGAF00007956503 fastq.gz 1.5 GB Report
EGAF00007956504 fastq.gz 3.0 GB Report
EGAF00007956505 fastq.gz 3.1 GB Report
EGAF00007956506 fastq.gz 2.1 GB Report
EGAF00007956507 fastq.gz 2.1 GB Report
EGAF00007956508 fastq.gz 2.8 GB Report
EGAF00007956509 fastq.gz 2.9 GB Report
EGAF00007956510 fastq.gz 1.4 GB Report
EGAF00007956511 fastq.gz 1.4 GB Report
EGAF00007956512 fastq.gz 2.4 GB Report
EGAF00007956513 fastq.gz 2.5 GB Report
EGAF00007956514 fastq.gz 1.8 GB Report
EGAF00007956515 fastq.gz 1.8 GB Report
EGAF00007956516 fastq.gz 1.2 GB Report
EGAF00007956517 fastq.gz 1.2 GB Report
EGAF00007956518 fastq.gz 3.1 GB Report
EGAF00007956519 fastq.gz 3.2 GB Report
EGAF00007956520 fastq.gz 3.6 GB Report
EGAF00007956521 fastq.gz 3.7 GB Report
EGAF00007956522 fastq.gz 2.9 GB Report
EGAF00007956523 fastq.gz 2.9 GB Report
EGAF00007956524 fastq.gz 2.8 GB Report
EGAF00007956525 fastq.gz 2.9 GB Report
EGAF00007956526 fastq.gz 3.5 GB Report
EGAF00007956527 fastq.gz 3.6 GB Report
EGAF00007956528 fastq.gz 1.4 GB Report
EGAF00007956529 fastq.gz 1.4 GB Report
EGAF00007956530 fastq.gz 2.0 GB Report
EGAF00007956531 fastq.gz 2.0 GB Report
EGAF00007956532 fastq.gz 1.2 GB Report
EGAF00007956533 fastq.gz 1.2 GB Report
EGAF00007956534 fastq.gz 2.1 GB Report
EGAF00007956535 fastq.gz 2.1 GB Report
EGAF00007956536 fastq.gz 2.7 GB Report
EGAF00007956537 fastq.gz 2.7 GB Report
EGAF00007956538 fastq.gz 2.2 GB Report
EGAF00007956539 fastq.gz 2.2 GB Report
EGAF00007956540 fastq.gz 3.1 GB Report
EGAF00007956541 fastq.gz 3.2 GB Report
EGAF00007956542 fastq.gz 2.4 GB Report
EGAF00007956543 fastq.gz 2.5 GB Report
72 Files (180.0 GB)