lymphoma plasma cfRNA

Dataset contains total RNA sequencing data from plasma of 65 different human donors: 30 diffuse large B-cell lymphoma (DLBCL) and 13 primary mediastinal large B-cell lymphoma (PMBCL) patients, and 22 cancer-free controls. Samples were sequenced on a NovaSeq 6000 and are provided in FASTQ format.

65 samples
DAC: EGAC00001003176
Technology: Illumina NovaSeq 6000

Access Policy1 Study Files

Metadata

Request Access

HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
MOR DUO:0000024 (version: 2021-02-23)publication moratoriumThis data use modifier indicates that requestor agrees not to publish results of studies until a specific date.
TS DUO:0000025 (version: 2021-02-23)time limit on useThis data use modifier indicates that use is approved for a specific number of months.
PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
IS DUO:0000028 (version: 2021-02-23)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.

pan-cancer plasma RNA sequencing data access policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom XXXXX grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: XXXXX and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. XXXXX: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.govinfo.gov/app/details/FR-2005-04-11/05-7247 ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify XXXXX within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify XXXXX prior to any significant changes to the protocol for the Project. 14. The User Institution will notify XXXXX as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. XXXXX may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than XXXXX. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001007127	Human lymphoma plasma cfRNA - raw data	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00008011157	fastq.gz	1.1 GB
EGAF00008011158	fastq.gz	1.2 GB
EGAF00008011159	fastq.gz	1.3 GB
EGAF00008011160	fastq.gz	1.5 GB
EGAF00008011161	fastq.gz	1.2 GB
EGAF00008011162	fastq.gz	1.4 GB
EGAF00008011163	fastq.gz	1.2 GB
EGAF00008011164	fastq.gz	1.3 GB
EGAF00008011165	fastq.gz	1.1 GB
EGAF00008011166	fastq.gz	1.2 GB
EGAF00008011167	fastq.gz	1.2 GB
EGAF00008011168	fastq.gz	1.3 GB
EGAF00008011169	fastq.gz	1.3 GB
EGAF00008011170	fastq.gz	1.4 GB
EGAF00008011171	fastq.gz	1.4 GB
EGAF00008011172	fastq.gz	1.5 GB
EGAF00008011173	fastq.gz	1.1 GB
EGAF00008011174	fastq.gz	1.2 GB
EGAF00008011175	fastq.gz	1.2 GB
EGAF00008011176	fastq.gz	1.3 GB
EGAF00008011177	fastq.gz	1.2 GB
EGAF00008011178	fastq.gz	1.3 GB
EGAF00008011179	fastq.gz	914.2 MB
EGAF00008011180	fastq.gz	1.0 GB
EGAF00008011181	fastq.gz	1.0 GB
EGAF00008011182	fastq.gz	1.1 GB
EGAF00008011183	fastq.gz	1.4 GB
EGAF00008011184	fastq.gz	1.5 GB
EGAF00008011185	fastq.gz	1.5 GB
EGAF00008011186	fastq.gz	1.6 GB
EGAF00008011187	fastq.gz	1.2 GB
EGAF00008011188	fastq.gz	1.3 GB
EGAF00008011189	fastq.gz	1.5 GB
EGAF00008011190	fastq.gz	1.6 GB
EGAF00008011191	fastq.gz	1.2 GB
EGAF00008011192	fastq.gz	1.3 GB
EGAF00008011193	fastq.gz	1.3 GB
EGAF00008011194	fastq.gz	1.5 GB
EGAF00008011195	fastq.gz	1.2 GB
EGAF00008011196	fastq.gz	1.3 GB
EGAF00008011197	fastq.gz	1.3 GB
EGAF00008011198	fastq.gz	1.4 GB
EGAF00008011199	fastq.gz	1.1 GB
EGAF00008011200	fastq.gz	1.2 GB
EGAF00008011201	fastq.gz	1.2 GB
EGAF00008011202	fastq.gz	1.3 GB
EGAF00008011203	fastq.gz	1.3 GB
EGAF00008011204	fastq.gz	1.4 GB
EGAF00008011205	fastq.gz	1.3 GB
EGAF00008011206	fastq.gz	1.4 GB
EGAF00008011207	fastq.gz	1.1 GB
EGAF00008011208	fastq.gz	1.2 GB
EGAF00008011209	fastq.gz	1.2 GB
EGAF00008011210	fastq.gz	1.3 GB
EGAF00008011211	fastq.gz	1.4 GB
EGAF00008011212	fastq.gz	1.5 GB
EGAF00008011213	fastq.gz	1.2 GB
EGAF00008011214	fastq.gz	1.4 GB
EGAF00008011215	fastq.gz	1.2 GB
EGAF00008011216	fastq.gz	1.3 GB
EGAF00008011217	fastq.gz	1.4 GB
EGAF00008011218	fastq.gz	1.5 GB
EGAF00008011219	fastq.gz	1.1 GB
EGAF00008011220	fastq.gz	1.2 GB
EGAF00008011221	fastq.gz	1.2 GB
EGAF00008011222	fastq.gz	1.3 GB
EGAF00008011223	fastq.gz	1.1 GB
EGAF00008011224	fastq.gz	1.2 GB
EGAF00008011225	fastq.gz	1.3 GB
EGAF00008011226	fastq.gz	1.4 GB
EGAF00008011227	fastq.gz	1.1 GB
EGAF00008011228	fastq.gz	1.3 GB
EGAF00008011229	fastq.gz	1.2 GB
EGAF00008011230	fastq.gz	1.3 GB
EGAF00008011231	fastq.gz	1.4 GB
EGAF00008011232	fastq.gz	1.5 GB
EGAF00008011233	fastq.gz	1.2 GB
EGAF00008011234	fastq.gz	1.3 GB
EGAF00008011235	fastq.gz	1.1 GB
EGAF00008011236	fastq.gz	1.2 GB
EGAF00008011237	fastq.gz	1.2 GB
EGAF00008011238	fastq.gz	1.3 GB
EGAF00008011239	fastq.gz	928.6 MB
EGAF00008011240	fastq.gz	994.6 MB
EGAF00008011241	fastq.gz	826.9 MB
EGAF00008011242	fastq.gz	904.2 MB
EGAF00008011243	fastq.gz	1.1 GB
EGAF00008011244	fastq.gz	1.2 GB
EGAF00008011245	fastq.gz	991.0 MB
EGAF00008011246	fastq.gz	1.1 GB
EGAF00008011247	fastq.gz	909.4 MB
EGAF00008011248	fastq.gz	995.9 MB
EGAF00008011249	fastq.gz	1.1 GB
EGAF00008011250	fastq.gz	1.2 GB
EGAF00008011251	fastq.gz	705.5 MB
EGAF00008011252	fastq.gz	783.7 MB
EGAF00008011253	fastq.gz	781.6 MB
EGAF00008011254	fastq.gz	872.9 MB
EGAF00008011255	fastq.gz	1.1 GB
EGAF00008011256	fastq.gz	1.2 GB
EGAF00008011257	fastq.gz	1.3 GB
EGAF00008011258	fastq.gz	1.4 GB
EGAF00008011259	fastq.gz	1.2 GB
EGAF00008011260	fastq.gz	1.3 GB
EGAF00008011261	fastq.gz	1.5 GB
EGAF00008011262	fastq.gz	1.7 GB
EGAF00008011263	fastq.gz	1.3 GB
EGAF00008011264	fastq.gz	1.4 GB
EGAF00008011265	fastq.gz	746.4 MB
EGAF00008011266	fastq.gz	827.9 MB
EGAF00008011267	fastq.gz	959.0 MB
EGAF00008011268	fastq.gz	1.1 GB
EGAF00008011269	fastq.gz	914.9 MB
EGAF00008011270	fastq.gz	988.3 MB
EGAF00008011271	fastq.gz	882.0 MB
EGAF00008011272	fastq.gz	965.0 MB
EGAF00008011273	fastq.gz	1.0 GB
EGAF00008011274	fastq.gz	1.1 GB
EGAF00008011275	fastq.gz	1.1 GB
EGAF00008011276	fastq.gz	1.2 GB
EGAF00008011277	fastq.gz	1.1 GB
EGAF00008011278	fastq.gz	1.3 GB
EGAF00008011279	fastq.gz	1.2 GB
EGAF00008011280	fastq.gz	1.3 GB
EGAF00008011281	fastq.gz	1.0 GB
EGAF00008011282	fastq.gz	1.1 GB
EGAF00008011283	fastq.gz	1.0 GB
EGAF00008011284	fastq.gz	1.1 GB
EGAF00008011285	fastq.gz	917.9 MB
EGAF00008011286	fastq.gz	988.4 MB
130 Files (156.7 GB)