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sWGS of cfDNA from metastatic CRC patients

Paired end shallow whole genome sequencing (sWGS) data (FASTQ) for the identification of genomewide somatic copy number alterations (SCNA) and the estimation of tumor fractions.

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Liquid Biopsy Policy

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to the studies, conducted from the Liquid Biopsy group at the D&R Institute of Human Genetics (Medical University of Graz, Austria) which have been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen Heitzer Ellen Heitzer is a Postdoctoral Fellow and is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer (ellen.heitzer@medunigraz.at) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006883 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008008375 fastq.gz 237.1 MB
EGAF00008008376 fastq.gz 248.1 MB
EGAF00008008377 fastq.gz 140.7 MB
EGAF00008008378 fastq.gz 151.2 MB
EGAF00008008379 fastq.gz 182.5 MB
EGAF00008008380 fastq.gz 199.1 MB
EGAF00008008381 fastq.gz 197.9 MB
EGAF00008008382 fastq.gz 210.2 MB
EGAF00008008383 fastq.gz 193.9 MB
EGAF00008008384 fastq.gz 204.4 MB
EGAF00008008385 fastq.gz 168.1 MB
EGAF00008008386 fastq.gz 178.4 MB
EGAF00008008387 fastq.gz 200.6 MB
EGAF00008008388 fastq.gz 210.9 MB
EGAF00008008389 fastq.gz 196.1 MB
EGAF00008008390 fastq.gz 203.9 MB
EGAF00008008391 fastq.gz 184.0 MB
EGAF00008008392 fastq.gz 192.7 MB
EGAF00008008393 fastq.gz 188.0 MB
EGAF00008008394 fastq.gz 201.5 MB
EGAF00008008395 fastq.gz 205.5 MB
EGAF00008008396 fastq.gz 218.6 MB
EGAF00008008397 fastq.gz 251.2 MB
EGAF00008008398 fastq.gz 262.1 MB
EGAF00008008399 fastq.gz 182.7 MB
EGAF00008008400 fastq.gz 190.3 MB
EGAF00008008401 fastq.gz 219.0 MB
EGAF00008008402 fastq.gz 232.6 MB
EGAF00008008403 fastq.gz 246.5 MB
EGAF00008008404 fastq.gz 257.0 MB
EGAF00008008405 fastq.gz 229.3 MB
EGAF00008008406 fastq.gz 240.7 MB
EGAF00008008407 fastq.gz 231.0 MB
EGAF00008008408 fastq.gz 237.6 MB
EGAF00008008409 fastq.gz 182.2 MB
EGAF00008008410 fastq.gz 191.6 MB
EGAF00008008411 fastq.gz 128.2 MB
EGAF00008008412 fastq.gz 135.2 MB
EGAF00008008413 fastq.gz 190.9 MB
EGAF00008008414 fastq.gz 204.3 MB
EGAF00008008415 fastq.gz 163.1 MB
EGAF00008008416 fastq.gz 179.6 MB
EGAF00008008417 fastq.gz 250.6 MB
EGAF00008008418 fastq.gz 263.4 MB
EGAF00008008419 fastq.gz 135.1 MB
EGAF00008008420 fastq.gz 136.0 MB
EGAF00008008421 fastq.gz 166.1 MB
EGAF00008008422 fastq.gz 174.8 MB
EGAF00008008423 fastq.gz 162.9 MB
EGAF00008008424 fastq.gz 174.5 MB
EGAF00008008425 fastq.gz 236.1 MB
EGAF00008008426 fastq.gz 247.7 MB
EGAF00008008427 fastq.gz 132.4 MB
EGAF00008008428 fastq.gz 133.8 MB
EGAF00008008429 fastq.gz 200.1 MB
EGAF00008008430 fastq.gz 212.8 MB
EGAF00008008431 fastq.gz 156.4 MB
EGAF00008008432 fastq.gz 164.3 MB
EGAF00008008433 fastq.gz 232.0 MB
EGAF00008008434 fastq.gz 244.1 MB
EGAF00008008435 fastq.gz 182.3 MB
EGAF00008008436 fastq.gz 184.6 MB
EGAF00008008437 fastq.gz 258.2 MB
EGAF00008008438 fastq.gz 276.1 MB
EGAF00008008439 fastq.gz 257.8 MB
EGAF00008008440 fastq.gz 270.8 MB
EGAF00008008441 fastq.gz 168.8 MB
EGAF00008008442 fastq.gz 177.9 MB
EGAF00008008443 fastq.gz 132.5 MB
EGAF00008008444 fastq.gz 134.7 MB
EGAF00008008445 fastq.gz 191.4 MB
EGAF00008008446 fastq.gz 203.2 MB
EGAF00008008447 fastq.gz 249.5 MB
EGAF00008008448 fastq.gz 260.2 MB
EGAF00008008449 fastq.gz 157.0 MB
EGAF00008008450 fastq.gz 165.4 MB
EGAF00008008451 fastq.gz 159.2 MB
EGAF00008008452 fastq.gz 169.7 MB
EGAF00008008453 fastq.gz 253.9 MB
EGAF00008008454 fastq.gz 272.0 MB
EGAF00008008455 fastq.gz 320.4 MB
EGAF00008008456 fastq.gz 335.0 MB
EGAF00008008457 fastq.gz 210.7 MB
EGAF00008008458 fastq.gz 224.7 MB
EGAF00008008459 fastq.gz 207.2 MB
EGAF00008008460 fastq.gz 220.3 MB
EGAF00008008461 fastq.gz 196.6 MB
EGAF00008008462 fastq.gz 209.5 MB
EGAF00008008463 fastq.gz 177.7 MB
EGAF00008008464 fastq.gz 188.6 MB
EGAF00008008465 fastq.gz 202.6 MB
EGAF00008008466 fastq.gz 213.4 MB
EGAF00008008467 fastq.gz 186.6 MB
EGAF00008008468 fastq.gz 200.2 MB
EGAF00008008469 fastq.gz 179.0 MB
EGAF00008008470 fastq.gz 190.9 MB
EGAF00008008471 fastq.gz 323.1 MB
EGAF00008008472 fastq.gz 336.8 MB
EGAF00008008473 fastq.gz 242.5 MB
EGAF00008008474 fastq.gz 268.5 MB
EGAF00008008475 fastq.gz 236.8 MB
EGAF00008008476 fastq.gz 249.7 MB
EGAF00008008477 fastq.gz 279.9 MB
EGAF00008008478 fastq.gz 293.0 MB
EGAF00008008479 fastq.gz 304.3 MB
EGAF00008008480 fastq.gz 328.6 MB
EGAF00008008481 fastq.gz 277.7 MB
EGAF00008008482 fastq.gz 296.9 MB
EGAF00008008483 fastq.gz 238.5 MB
EGAF00008008484 fastq.gz 255.0 MB
EGAF00008008485 fastq.gz 257.6 MB
EGAF00008008486 fastq.gz 269.6 MB
EGAF00008008487 fastq.gz 177.4 MB
EGAF00008008488 fastq.gz 188.0 MB
EGAF00008008489 fastq.gz 180.2 MB
EGAF00008008490 fastq.gz 193.7 MB
EGAF00008008491 fastq.gz 148.3 MB
EGAF00008008492 fastq.gz 158.9 MB
EGAF00008008493 fastq.gz 250.8 MB
EGAF00008008494 fastq.gz 267.3 MB
EGAF00008008495 fastq.gz 248.0 MB
EGAF00008008496 fastq.gz 262.6 MB
EGAF00008008497 fastq.gz 216.7 MB
EGAF00008008498 fastq.gz 230.0 MB
EGAF00008008499 fastq.gz 158.2 MB
EGAF00008008500 fastq.gz 179.3 MB
EGAF00008008501 fastq.gz 257.1 MB
EGAF00008008502 fastq.gz 275.4 MB
EGAF00008008503 fastq.gz 168.4 MB
EGAF00008008504 fastq.gz 177.3 MB
EGAF00008008505 fastq.gz 242.8 MB
EGAF00008008506 fastq.gz 256.9 MB
EGAF00008008507 fastq.gz 149.4 MB
EGAF00008008508 fastq.gz 162.4 MB
EGAF00008008509 fastq.gz 157.5 MB
EGAF00008008510 fastq.gz 168.9 MB
EGAF00008008511 fastq.gz 253.7 MB
EGAF00008008512 fastq.gz 263.9 MB
EGAF00008008513 fastq.gz 194.1 MB
EGAF00008008514 fastq.gz 207.7 MB
EGAF00008008515 fastq.gz 219.4 MB
EGAF00008008516 fastq.gz 234.4 MB
EGAF00008008517 fastq.gz 151.0 MB
EGAF00008008518 fastq.gz 154.9 MB
EGAF00008008519 fastq.gz 210.0 MB
EGAF00008008520 fastq.gz 225.3 MB
EGAF00008008521 fastq.gz 259.5 MB
EGAF00008008522 fastq.gz 279.5 MB
EGAF00008008523 fastq.gz 201.2 MB
EGAF00008008524 fastq.gz 213.3 MB
EGAF00008008525 fastq.gz 193.6 MB
EGAF00008008526 fastq.gz 201.2 MB
EGAF00008008527 fastq.gz 159.9 MB
EGAF00008008528 fastq.gz 172.0 MB
EGAF00008008529 fastq.gz 170.2 MB
EGAF00008008530 fastq.gz 180.3 MB
EGAF00008008531 fastq.gz 281.4 MB
EGAF00008008532 fastq.gz 293.2 MB
EGAF00008008533 fastq.gz 215.8 MB
EGAF00008008534 fastq.gz 225.6 MB
EGAF00008008535 fastq.gz 228.6 MB
EGAF00008008536 fastq.gz 240.3 MB
EGAF00008008537 fastq.gz 243.2 MB
EGAF00008008538 fastq.gz 254.4 MB
EGAF00008008539 fastq.gz 189.8 MB
EGAF00008008540 fastq.gz 199.7 MB
EGAF00008008541 fastq.gz 184.6 MB
EGAF00008008542 fastq.gz 191.2 MB
EGAF00008008543 fastq.gz 197.3 MB
EGAF00008008544 fastq.gz 210.5 MB
EGAF00008008545 fastq.gz 181.0 MB
EGAF00008008546 fastq.gz 190.0 MB
EGAF00008008547 fastq.gz 476.7 MB
EGAF00008008548 fastq.gz 495.3 MB
EGAF00008008549 fastq.gz 204.4 MB
EGAF00008008550 fastq.gz 215.0 MB
EGAF00008008551 fastq.gz 239.8 MB
EGAF00008008552 fastq.gz 249.0 MB
EGAF00008008553 fastq.gz 317.7 MB
EGAF00008008554 fastq.gz 330.3 MB
EGAF00008008555 fastq.gz 165.5 MB
EGAF00008008556 fastq.gz 175.4 MB
EGAF00008008557 fastq.gz 186.3 MB
EGAF00008008558 fastq.gz 193.3 MB
EGAF00008008559 fastq.gz 232.2 MB
EGAF00008008560 fastq.gz 243.6 MB
EGAF00008008561 fastq.gz 154.5 MB
EGAF00008008562 fastq.gz 163.8 MB
EGAF00008008563 fastq.gz 105.6 MB
EGAF00008008564 fastq.gz 109.2 MB
EGAF00008008565 fastq.gz 131.6 MB
EGAF00008008566 fastq.gz 137.9 MB
EGAF00008008567 fastq.gz 217.2 MB
EGAF00008008568 fastq.gz 230.5 MB
EGAF00008008569 fastq.gz 181.2 MB
EGAF00008008570 fastq.gz 189.7 MB
EGAF00008008571 fastq.gz 123.9 MB
EGAF00008008572 fastq.gz 131.3 MB
EGAF00008008573 fastq.gz 178.1 MB
EGAF00008008574 fastq.gz 188.7 MB
EGAF00008008575 fastq.gz 235.9 MB
EGAF00008008576 fastq.gz 246.4 MB
EGAF00008008577 fastq.gz 150.2 MB
EGAF00008008578 fastq.gz 157.9 MB
EGAF00008008579 fastq.gz 187.9 MB
EGAF00008008580 fastq.gz 199.7 MB
EGAF00008008581 fastq.gz 312.9 MB
EGAF00008008582 fastq.gz 324.7 MB
EGAF00008008583 fastq.gz 205.8 MB
EGAF00008008584 fastq.gz 215.7 MB
EGAF00008008585 fastq.gz 215.7 MB
EGAF00008008586 fastq.gz 227.4 MB
EGAF00008008587 fastq.gz 236.0 MB
EGAF00008008588 fastq.gz 243.4 MB
214 Files (45.6 GB)