About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Paired RNA-Seq of 32 samples of chemo-naïve and post-chemotherapy PDAC tumors

Paired RNA-Seq of 32 samples of chemo-naïve and post-chemotherapy PDAC tumors (HIPO_015) to define the molecular and cellular impact of neoadjuvant chemotherapy. Transcriptome analysis combined with high resolution mapping of whole tissue sections identified GATA6 (Classical), KRT17 (Basal-like) and Cytochrome P450 3A (CYP3A) co-expressing cells that were preferentially enriched in post-CTX resected samples. The sequencing was done on HiSeq2000/HiSeq2500 using the Takara_SMARTer_Ultra_Low_Input_RNA_and_NEBNext_ChIP-Seq Kit.

Request Access

DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007143 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008025603 fastq.gz 4.9 GB Report
EGAF00008025604 fastq.gz 5.1 GB Report
EGAF00008025605 fastq.gz 3.3 GB Report
EGAF00008025606 fastq.gz 3.5 GB Report
EGAF00008025607 fastq.gz 3.2 GB Report
EGAF00008025608 fastq.gz 3.4 GB Report
EGAF00008025609 fastq.gz 6.6 GB Report
EGAF00008025610 fastq.gz 6.8 GB Report
EGAF00008025611 fastq.gz 6.7 GB Report
EGAF00008025612 fastq.gz 7.0 GB Report
EGAF00008025613 fastq.gz 6.0 GB Report
EGAF00008025614 fastq.gz 6.1 GB Report
EGAF00008025615 fastq.gz 4.4 GB Report
EGAF00008025616 fastq.gz 4.6 GB Report
EGAF00008025617 fastq.gz 6.0 GB Report
EGAF00008025618 fastq.gz 5.6 GB Report
EGAF00008025619 fastq.gz 7.1 GB Report
EGAF00008025620 fastq.gz 7.5 GB Report
EGAF00008025621 fastq.gz 5.1 GB Report
EGAF00008025622 fastq.gz 5.3 GB Report
EGAF00008025623 fastq.gz 6.0 GB Report
EGAF00008025624 fastq.gz 6.2 GB Report
EGAF00008025625 fastq.gz 7.0 GB Report
EGAF00008025626 fastq.gz 7.3 GB Report
EGAF00008025627 fastq.gz 4.5 GB Report
EGAF00008025628 fastq.gz 4.7 GB Report
EGAF00008025629 fastq.gz 7.4 GB Report
EGAF00008025630 fastq.gz 7.8 GB Report
EGAF00008025631 fastq.gz 3.5 GB Report
EGAF00008025632 fastq.gz 3.6 GB Report
EGAF00008025633 fastq.gz 3.4 GB Report
EGAF00008025634 fastq.gz 3.6 GB Report
EGAF00008025635 fastq.gz 3.0 GB Report
EGAF00008025636 fastq.gz 3.1 GB Report
EGAF00008025637 fastq.gz 3.0 GB Report
EGAF00008025638 fastq.gz 3.1 GB Report
EGAF00008025639 fastq.gz 6.4 GB Report
EGAF00008025640 fastq.gz 6.7 GB Report
EGAF00008025641 fastq.gz 6.3 GB Report
EGAF00008025642 fastq.gz 6.6 GB Report
EGAF00008025643 fastq.gz 6.4 GB Report
EGAF00008025644 fastq.gz 6.7 GB Report
EGAF00008025645 fastq.gz 6.9 GB Report
EGAF00008025646 fastq.gz 7.1 GB Report
EGAF00008025647 fastq.gz 4.2 GB Report
EGAF00008025648 fastq.gz 4.4 GB Report
EGAF00008025649 fastq.gz 4.8 GB Report
EGAF00008025650 fastq.gz 5.0 GB Report
EGAF00008025651 fastq.gz 2.9 GB Report
EGAF00008025652 fastq.gz 3.0 GB Report
EGAF00008025653 fastq.gz 2.9 GB Report
EGAF00008025654 fastq.gz 3.0 GB Report
EGAF00008025655 fastq.gz 3.0 GB Report
EGAF00008025656 fastq.gz 3.1 GB Report
EGAF00008025657 fastq.gz 3.0 GB Report
EGAF00008025658 fastq.gz 3.1 GB Report
EGAF00008025659 fastq.gz 3.0 GB Report
EGAF00008025660 fastq.gz 3.1 GB Report
EGAF00008025661 fastq.gz 2.9 GB Report
EGAF00008025662 fastq.gz 3.1 GB Report
EGAF00008025663 fastq.gz 2.2 GB Report
EGAF00008025664 fastq.gz 2.4 GB Report
EGAF00008025665 fastq.gz 2.3 GB Report
EGAF00008025666 fastq.gz 2.4 GB Report
EGAF00008025667 fastq.gz 2.9 GB Report
EGAF00008025668 fastq.gz 3.0 GB Report
EGAF00008025669 fastq.gz 2.9 GB Report
EGAF00008025670 fastq.gz 3.0 GB Report
EGAF00008025671 fastq.gz 6.5 GB Report
EGAF00008025672 fastq.gz 5.7 GB Report
EGAF00008025673 fastq.gz 8.1 GB Report
EGAF00008025674 fastq.gz 7.5 GB Report
EGAF00008025675 fastq.gz 3.1 GB Report
EGAF00008025676 fastq.gz 3.3 GB Report
EGAF00008025677 fastq.gz 3.2 GB Report
EGAF00008025678 fastq.gz 3.3 GB Report
EGAF00008025679 fastq.gz 7.0 GB Report
EGAF00008025680 fastq.gz 7.2 GB Report
EGAF00008025681 fastq.gz 3.2 GB Report
EGAF00008025682 fastq.gz 3.3 GB Report
EGAF00008025683 fastq.gz 3.2 GB Report
EGAF00008025684 fastq.gz 3.4 GB Report
EGAF00008025685 fastq.gz 5.0 GB Report
EGAF00008025686 fastq.gz 5.2 GB Report
84 Files (392.3 GB)