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Mtb infected and uninfected neutrophils after 1 and 6 hrs

Fastq.gz files for mRNA sequenced from Mtb infected and uninfected neutrophils after 1 and 6 hrs. Samples were sequenced in 2 batched as indicated per experiment. Batch 1 was SE unstranded, 100bp on an Illumina HiSeq4000 sequencer and batch 2 unstranded, 150bp paired-end on an Illumina NovaSeq6000 sequencer. Phenotypic data for the samples is also included.

Request Access

Qualified researchers can request access to the data by completing a Data Access Request form which will be evaluated by the Data Access Committee who will consult with the Health Research Ethics Committee of Stellenbosch and the Stellenbosch University Contracts Office. Data access will be for approved use and will be governed by the provisions laid out in the associated informed consent of individual data subjects and of the Health Research Ethics Committee of Stellenbosch University. All investigators will have to sign a Data Transfer Agreement as stipulated by the Stellenbosch University Contracts Office. A qualified researcher refers to a senior investigator who is employed or legitimately affiliated with an academic, non-profit or government institution and who has a track record in the field. Researchers granted access to Project Data must feedback the results of their research to the Data Access Committee, after publication for distribution to the community representative. Access is conditional upon availability of data and on signed agreement by the researcher(s) and the responsible employing institution to abide by the policies and conditions related to publication, data ownership, data return, intellectual property rights, data disposal, ethical approval, confidentiality and commercialization referred herein.

S18/08/175 (PhD) 23 March 2023 v1.0 Neutrophils as effector cells in resistance to infection by Mycobacterium tuberculosis in HIV- infected individuals (NeutroTB) Data Access Policy Qualified researchers can request access to the data by completing a Data Access Request form which will be evaluated by the Data Access Committee who will consult with the Health Research Ethics Committee of Stellenbosch and the Stellenbosch University Contracts Office. Data access will be for approved use and will be governed by the provisions laid out in the associated informed consent of individual data subjects and of the Health Research Ethics Committee of Stellenbosch University. All investigators will have to sign a Data Transfer Agreement as stipulated by the Stellenbosch University Contracts Office. A qualified researcher refers to a senior investigator who is employed or legitimately affiliated with an academic, non-profit or government institution and who has a track record in the field. Researchers granted access to Project Data must feedback the results of their research to the Data Access Committee, after publication for distribution to the community representative. Access is conditional upon availability of data and on signed agreement by the researcher(s) and the responsible employing institution to abide by the policies and conditions related to publication, data ownership, data return, intellectual property rights, data disposal, ethical approval, confidentiality and commercialization referred herein.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007262 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008081137 fastq.gz 1.8 GB
EGAF00008081138 fastq.gz 1.9 GB
EGAF00008081139 fastq.gz 1.7 GB
EGAF00008081140 fastq.gz 1.8 GB
EGAF00008081141 fastq.gz 1.5 GB
EGAF00008081142 fastq.gz 1.5 GB
EGAF00008081143 fastq.gz 1.3 GB
EGAF00008081144 fastq.gz 1.3 GB
EGAF00008081145 fastq.gz 1.9 GB
EGAF00008081146 fastq.gz 1.7 GB
EGAF00008081147 fastq.gz 1.8 GB
EGAF00008081148 fastq.gz 1.7 GB
EGAF00008081149 fastq.gz 1.7 GB
EGAF00008081150 fastq.gz 1.7 GB
EGAF00008081151 fastq.gz 2.3 GB
EGAF00008081152 fastq.gz 2.4 GB
EGAF00008081153 fastq.gz 2.0 GB
EGAF00008081154 fastq.gz 2.0 GB
EGAF00008081155 fastq.gz 1.8 GB
EGAF00008081156 fastq.gz 1.8 GB
EGAF00008081157 fastq.gz 1.8 GB
EGAF00008081158 fastq.gz 1.8 GB
EGAF00008081159 fastq.gz 1.7 GB
EGAF00008081160 fastq.gz 1.7 GB
EGAF00008081161 fastq.gz 1.3 GB
EGAF00008081162 fastq.gz 1.3 GB
EGAF00008081163 fastq.gz 2.1 GB
EGAF00008081164 fastq.gz 2.1 GB
EGAF00008081165 fastq.gz 2.6 GB
EGAF00008081166 fastq.gz 2.7 GB
EGAF00008081167 fastq.gz 1.7 GB
EGAF00008081168 fastq.gz 1.8 GB
EGAF00008081169 fastq.gz 1.6 GB
EGAF00008081170 fastq.gz 1.7 GB
EGAF00008081171 fastq.gz 2.3 GB
EGAF00008081172 fastq.gz 2.3 GB
EGAF00008081173 fastq.gz 1.6 GB
EGAF00008081174 fastq.gz 1.6 GB
EGAF00008081175 fastq.gz 1.6 GB
EGAF00008081176 fastq.gz 1.7 GB
EGAF00008081177 fastq.gz 1.9 GB
EGAF00008081178 fastq.gz 2.0 GB
EGAF00008081179 fastq.gz 1.2 GB
EGAF00008081180 fastq.gz 1.3 GB
EGAF00008081181 fastq.gz 1.9 GB
EGAF00008081182 fastq.gz 1.9 GB
EGAF00008081183 fastq.gz 1.3 GB
EGAF00008081184 fastq.gz 1.3 GB
EGAF00008081185 fastq.gz 1.7 GB
EGAF00008081186 fastq.gz 1.7 GB
EGAF00008081187 fastq.gz 2.5 GB
EGAF00008081188 fastq.gz 2.6 GB
EGAF00008081189 fastq.gz 1.4 GB
EGAF00008081190 fastq.gz 1.5 GB
EGAF00008081191 fastq.gz 2.1 GB
EGAF00008081192 fastq.gz 2.1 GB
EGAF00008081193 fastq.gz 1.7 GB
EGAF00008081194 fastq.gz 1.8 GB
EGAF00008081195 fastq.gz 881.3 MB
EGAF00008081196 fastq.gz 895.4 MB
EGAF00008081197 fastq.gz 1.5 GB
EGAF00008081198 fastq.gz 1.6 GB
EGAF00008081199 fastq.gz 1.9 GB
EGAF00008081200 fastq.gz 1.9 GB
EGAF00008081201 fastq.gz 1.7 GB
EGAF00008081202 fastq.gz 1.8 GB
EGAF00008081203 fastq.gz 1.4 GB
EGAF00008081204 fastq.gz 1.4 GB
EGAF00008081205 fastq.gz 1.7 GB
EGAF00008081206 fastq.gz 1.8 GB
EGAF00008081207 fastq.gz 1.8 GB
EGAF00008081208 fastq.gz 1.9 GB
EGAF00008081209 fastq.gz 1.6 GB
EGAF00008081210 fastq.gz 1.8 GB
EGAF00008081211 fastq.gz 1.6 GB
EGAF00008081212 fastq.gz 1.7 GB
EGAF00008081213 fastq.gz 1.9 GB
EGAF00008081214 fastq.gz 1.6 GB
EGAF00008081215 fastq.gz 1.4 GB
EGAF00008081216 fastq.gz 1.6 GB
EGAF00008081217 fastq.gz 1.6 GB
EGAF00008081218 fastq.gz 1.7 GB
EGAF00008081219 fastq.gz 1.4 GB
EGAF00008081220 fastq.gz 1.5 GB
EGAF00008081221 fastq.gz 1.2 GB
EGAF00008081222 fastq.gz 1.2 GB
EGAF00008081223 fastq.gz 1.4 GB
EGAF00008081224 fastq.gz 1.5 GB
EGAF00008081225 fastq.gz 1.6 GB
EGAF00008081226 fastq.gz 1.6 GB
EGAF00008081227 fastq.gz 1.4 GB
EGAF00008081228 fastq.gz 1.4 GB
EGAF00008081229 fastq.gz 1.6 GB
EGAF00008081230 fastq.gz 1.6 GB
EGAF00008081231 fastq.gz 1.4 GB
EGAF00008081232 fastq.gz 1.4 GB
EGAF00008081233 fastq.gz 1.8 GB
EGAF00008081234 fastq.gz 2.0 GB
EGAF00008081235 fastq.gz 2.0 GB
EGAF00008081236 fastq.gz 1.7 GB
EGAF00008081237 fastq.gz 1.6 GB
EGAF00008081238 fastq.gz 1.6 GB
EGAF00008081239 fastq.gz 1.6 GB
EGAF00008081240 fastq.gz 1.6 GB
EGAF00008081241 fastq.gz 1.4 GB
EGAF00008081242 fastq.gz 1.5 GB
EGAF00008081243 fastq.gz 1.8 GB
EGAF00008081244 fastq.gz 1.8 GB
EGAF00008081245 fastq.gz 1.5 GB
EGAF00008081246 fastq.gz 1.5 GB
EGAF00008081247 fastq.gz 1.7 GB
EGAF00008081248 fastq.gz 1.8 GB
EGAF00008081249 fastq.gz 1.8 GB
EGAF00008081250 fastq.gz 1.8 GB
EGAF00008081251 fastq.gz 1.6 GB
EGAF00008081252 fastq.gz 1.6 GB
EGAF00008081253 fastq.gz 1.9 GB
EGAF00008081254 fastq.gz 2.2 GB
EGAF00008081255 fastq.gz 1.7 GB
EGAF00008081256 fastq.gz 1.7 GB
EGAF00008081257 fastq.gz 1.7 GB
EGAF00008081258 fastq.gz 1.7 GB
EGAF00008081259 fastq.gz 1.7 GB
EGAF00008081260 fastq.gz 1.8 GB
EGAF00008081261 fastq.gz 1.7 GB
EGAF00008081262 fastq.gz 1.7 GB
EGAF00008081263 fastq.gz 1.4 GB
EGAF00008081264 fastq.gz 1.4 GB
EGAF00008081265 fastq.gz 1.7 GB
EGAF00008081266 fastq.gz 1.8 GB
EGAF00008081267 fastq.gz 1.7 GB
EGAF00008081268 fastq.gz 1.8 GB
EGAF00008081269 fastq.gz 2.0 GB
EGAF00008081270 fastq.gz 2.1 GB
EGAF00008081271 fastq.gz 1.6 GB
EGAF00008081272 fastq.gz 1.6 GB
EGAF00008081273 fastq.gz 1.2 GB
EGAF00008081274 fastq.gz 1.2 GB
EGAF00008081275 fastq.gz 1.4 GB
EGAF00008081276 fastq.gz 1.4 GB
EGAF00008081277 fastq.gz 1.1 GB
EGAF00008081278 fastq.gz 1.1 GB
EGAF00008081279 fastq.gz 1.1 GB
EGAF00008081280 fastq.gz 1.1 GB
EGAF00008081281 fastq.gz 1.7 GB
EGAF00008081282 fastq.gz 1.7 GB
EGAF00008081283 fastq.gz 1.6 GB
EGAF00008081284 fastq.gz 1.8 GB
EGAF00008081285 fastq.gz 1.2 GB
EGAF00008081286 fastq.gz 1.2 GB
EGAF00008081287 fastq.gz 1.7 GB
EGAF00008081288 fastq.gz 1.8 GB
EGAF00008081289 fastq.gz 1.5 GB
EGAF00008081290 fastq.gz 1.5 GB
EGAF00008081291 fastq.gz 1.5 GB
EGAF00008081292 fastq.gz 1.5 GB
EGAF00008081293 fastq.gz 1.3 GB
EGAF00008081294 fastq.gz 1.3 GB
EGAF00008081295 fastq.gz 1.7 GB
EGAF00008081296 fastq.gz 1.7 GB
EGAF00008081297 fastq.gz 1.4 GB
EGAF00008081298 fastq.gz 1.4 GB
EGAF00008081299 fastq.gz 1.6 GB
EGAF00008081300 fastq.gz 1.6 GB
EGAF00008081301 fastq.gz 1.4 GB
EGAF00008081302 fastq.gz 1.4 GB
EGAF00008081303 fastq.gz 1.7 GB
EGAF00008081304 fastq.gz 1.7 GB
EGAF00008081305 fastq.gz 1.6 GB
EGAF00008081306 fastq.gz 1.7 GB
EGAF00008081307 fastq.gz 1.6 GB
EGAF00008081308 fastq.gz 1.6 GB
EGAF00008081309 fastq.gz 1.6 GB
EGAF00008081310 fastq.gz 1.7 GB
EGAF00008081311 fastq.gz 856.6 MB
EGAF00008081312 fastq.gz 868.3 MB
EGAF00008081313 fastq.gz 1.3 GB
EGAF00008081314 fastq.gz 1.3 GB
EGAF00008081315 fastq.gz 2.0 GB
EGAF00008081316 fastq.gz 2.0 GB
EGAF00008081317 fastq.gz 2.1 GB
EGAF00008081318 fastq.gz 2.1 GB
EGAF00008081319 fastq.gz 1.8 GB
EGAF00008081320 fastq.gz 1.8 GB
EGAF00008081321 fastq.gz 1.4 GB
EGAF00008081322 fastq.gz 1.4 GB
EGAF00008081323 fastq.gz 2.0 GB
EGAF00008081324 fastq.gz 2.0 GB
EGAF00008081325 fastq.gz 1.1 GB
EGAF00008081326 fastq.gz 1.2 GB
EGAF00008081327 fastq.gz 1.5 GB
EGAF00008081328 fastq.gz 1.5 GB
EGAF00008081329 fastq.gz 1.4 GB
EGAF00008081330 fastq.gz 1.4 GB
EGAF00008081331 fastq.gz 1.5 GB
EGAF00008081332 fastq.gz 1.5 GB
196 Files (322.6 GB)