About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Mtb infected and uninfected neutrophils after 1 and 6 hrs

Fastq.gz files for mRNA sequenced from Mtb infected and uninfected neutrophils after 1 and 6 hrs. Samples were sequenced in 2 batched as indicated per experiment. Batch 1 was SE unstranded, 100bp on an Illumina HiSeq4000 sequencer and batch 2 unstranded, 150bp paired-end on an Illumina NovaSeq6000 sequencer. Phenotypic data for the samples is also included.

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DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0018076

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

Qualified researchers can request access to the data by completing a Data Access Request form which will be evaluated by the Data Access Committee who will consult with the Health Research Ethics Committee of Stellenbosch and the Stellenbosch University Contracts Office. Data access will be for approved use and will be governed by the provisions laid out in the associated informed consent of individual data subjects and of the Health Research Ethics Committee of Stellenbosch University. All investigators will have to sign a Data Transfer Agreement as stipulated by the Stellenbosch University Contracts Office. A qualified researcher refers to a senior investigator who is employed or legitimately affiliated with an academic, non-profit or government institution and who has a track record in the field. Researchers granted access to Project Data must feedback the results of their research to the Data Access Committee, after publication for distribution to the community representative. Access is conditional upon availability of data and on signed agreement by the researcher(s) and the responsible employing institution to abide by the policies and conditions related to publication, data ownership, data return, intellectual property rights, data disposal, ethical approval, confidentiality and commercialization referred herein.

S18/08/175 (PhD) 23 March 2023 v1.0 Neutrophils as effector cells in resistance to infection by Mycobacterium tuberculosis in HIV- infected individuals (NeutroTB) Data Access Policy Qualified researchers can request access to the data by completing a Data Access Request form which will be evaluated by the Data Access Committee who will consult with the Health Research Ethics Committee of Stellenbosch and the Stellenbosch University Contracts Office. Data access will be for approved use and will be governed by the provisions laid out in the associated informed consent of individual data subjects and of the Health Research Ethics Committee of Stellenbosch University. All investigators will have to sign a Data Transfer Agreement as stipulated by the Stellenbosch University Contracts Office. A qualified researcher refers to a senior investigator who is employed or legitimately affiliated with an academic, non-profit or government institution and who has a track record in the field. Researchers granted access to Project Data must feedback the results of their research to the Data Access Committee, after publication for distribution to the community representative. Access is conditional upon availability of data and on signed agreement by the researcher(s) and the responsible employing institution to abide by the policies and conditions related to publication, data ownership, data return, intellectual property rights, data disposal, ethical approval, confidentiality and commercialization referred herein.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007262 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008081137 fastq.gz 1.8 GB Report
EGAF00008081138 fastq.gz 1.9 GB Report
EGAF00008081139 fastq.gz 1.7 GB Report
EGAF00008081140 fastq.gz 1.8 GB Report
EGAF00008081141 fastq.gz 1.5 GB Report
EGAF00008081142 fastq.gz 1.5 GB Report
EGAF00008081143 fastq.gz 1.3 GB Report
EGAF00008081144 fastq.gz 1.3 GB Report
EGAF00008081145 fastq.gz 1.9 GB Report
EGAF00008081146 fastq.gz 1.7 GB Report
EGAF00008081147 fastq.gz 1.8 GB Report
EGAF00008081148 fastq.gz 1.7 GB Report
EGAF00008081149 fastq.gz 1.7 GB Report
EGAF00008081150 fastq.gz 1.7 GB Report
EGAF00008081151 fastq.gz 2.3 GB Report
EGAF00008081152 fastq.gz 2.4 GB Report
EGAF00008081153 fastq.gz 2.0 GB Report
EGAF00008081154 fastq.gz 2.0 GB Report
EGAF00008081155 fastq.gz 1.8 GB Report
EGAF00008081156 fastq.gz 1.8 GB Report
EGAF00008081157 fastq.gz 1.8 GB Report
EGAF00008081158 fastq.gz 1.8 GB Report
EGAF00008081159 fastq.gz 1.7 GB Report
EGAF00008081160 fastq.gz 1.7 GB Report
EGAF00008081161 fastq.gz 1.3 GB Report
EGAF00008081162 fastq.gz 1.3 GB Report
EGAF00008081163 fastq.gz 2.1 GB Report
EGAF00008081164 fastq.gz 2.1 GB Report
EGAF00008081165 fastq.gz 2.6 GB Report
EGAF00008081166 fastq.gz 2.7 GB Report
EGAF00008081167 fastq.gz 1.7 GB Report
EGAF00008081168 fastq.gz 1.8 GB Report
EGAF00008081169 fastq.gz 1.6 GB Report
EGAF00008081170 fastq.gz 1.7 GB Report
EGAF00008081171 fastq.gz 2.3 GB Report
EGAF00008081172 fastq.gz 2.3 GB Report
EGAF00008081173 fastq.gz 1.6 GB Report
EGAF00008081174 fastq.gz 1.6 GB Report
EGAF00008081175 fastq.gz 1.6 GB Report
EGAF00008081176 fastq.gz 1.7 GB Report
EGAF00008081177 fastq.gz 1.9 GB Report
EGAF00008081178 fastq.gz 2.0 GB Report
EGAF00008081179 fastq.gz 1.2 GB Report
EGAF00008081180 fastq.gz 1.3 GB Report
EGAF00008081181 fastq.gz 1.9 GB Report
EGAF00008081182 fastq.gz 1.9 GB Report
EGAF00008081183 fastq.gz 1.3 GB Report
EGAF00008081184 fastq.gz 1.3 GB Report
EGAF00008081185 fastq.gz 1.7 GB Report
EGAF00008081186 fastq.gz 1.7 GB Report
EGAF00008081187 fastq.gz 2.5 GB Report
EGAF00008081188 fastq.gz 2.6 GB Report
EGAF00008081189 fastq.gz 1.4 GB Report
EGAF00008081190 fastq.gz 1.5 GB Report
EGAF00008081191 fastq.gz 2.1 GB Report
EGAF00008081192 fastq.gz 2.1 GB Report
EGAF00008081193 fastq.gz 1.7 GB Report
EGAF00008081194 fastq.gz 1.8 GB Report
EGAF00008081195 fastq.gz 881.3 MB Report
EGAF00008081196 fastq.gz 895.4 MB Report
EGAF00008081197 fastq.gz 1.5 GB Report
EGAF00008081198 fastq.gz 1.6 GB Report
EGAF00008081199 fastq.gz 1.9 GB Report
EGAF00008081200 fastq.gz 1.9 GB Report
EGAF00008081201 fastq.gz 1.7 GB Report
EGAF00008081202 fastq.gz 1.8 GB Report
EGAF00008081203 fastq.gz 1.4 GB Report
EGAF00008081204 fastq.gz 1.4 GB Report
EGAF00008081205 fastq.gz 1.7 GB Report
EGAF00008081206 fastq.gz 1.8 GB Report
EGAF00008081207 fastq.gz 1.8 GB Report
EGAF00008081208 fastq.gz 1.9 GB Report
EGAF00008081209 fastq.gz 1.6 GB Report
EGAF00008081210 fastq.gz 1.8 GB Report
EGAF00008081211 fastq.gz 1.6 GB Report
EGAF00008081212 fastq.gz 1.7 GB Report
EGAF00008081213 fastq.gz 1.9 GB Report
EGAF00008081214 fastq.gz 1.6 GB Report
EGAF00008081215 fastq.gz 1.4 GB Report
EGAF00008081216 fastq.gz 1.6 GB Report
EGAF00008081217 fastq.gz 1.6 GB Report
EGAF00008081218 fastq.gz 1.7 GB Report
EGAF00008081219 fastq.gz 1.4 GB Report
EGAF00008081220 fastq.gz 1.5 GB Report
EGAF00008081221 fastq.gz 1.2 GB Report
EGAF00008081222 fastq.gz 1.2 GB Report
EGAF00008081223 fastq.gz 1.4 GB Report
EGAF00008081224 fastq.gz 1.5 GB Report
EGAF00008081225 fastq.gz 1.6 GB Report
EGAF00008081226 fastq.gz 1.6 GB Report
EGAF00008081227 fastq.gz 1.4 GB Report
EGAF00008081228 fastq.gz 1.4 GB Report
EGAF00008081229 fastq.gz 1.6 GB Report
EGAF00008081230 fastq.gz 1.6 GB Report
EGAF00008081231 fastq.gz 1.4 GB Report
EGAF00008081232 fastq.gz 1.4 GB Report
EGAF00008081233 fastq.gz 1.8 GB Report
EGAF00008081234 fastq.gz 2.0 GB Report
EGAF00008081235 fastq.gz 2.0 GB Report
EGAF00008081236 fastq.gz 1.7 GB Report
EGAF00008081237 fastq.gz 1.6 GB Report
EGAF00008081238 fastq.gz 1.6 GB Report
EGAF00008081239 fastq.gz 1.6 GB Report
EGAF00008081240 fastq.gz 1.6 GB Report
EGAF00008081241 fastq.gz 1.4 GB Report
EGAF00008081242 fastq.gz 1.5 GB Report
EGAF00008081243 fastq.gz 1.8 GB Report
EGAF00008081244 fastq.gz 1.8 GB Report
EGAF00008081245 fastq.gz 1.5 GB Report
EGAF00008081246 fastq.gz 1.5 GB Report
EGAF00008081247 fastq.gz 1.7 GB Report
EGAF00008081248 fastq.gz 1.8 GB Report
EGAF00008081249 fastq.gz 1.8 GB Report
EGAF00008081250 fastq.gz 1.8 GB Report
EGAF00008081251 fastq.gz 1.6 GB Report
EGAF00008081252 fastq.gz 1.6 GB Report
EGAF00008081253 fastq.gz 1.9 GB Report
EGAF00008081254 fastq.gz 2.2 GB Report
EGAF00008081255 fastq.gz 1.7 GB Report
EGAF00008081256 fastq.gz 1.7 GB Report
EGAF00008081257 fastq.gz 1.7 GB Report
EGAF00008081258 fastq.gz 1.7 GB Report
EGAF00008081259 fastq.gz 1.7 GB Report
EGAF00008081260 fastq.gz 1.8 GB Report
EGAF00008081261 fastq.gz 1.7 GB Report
EGAF00008081262 fastq.gz 1.7 GB Report
EGAF00008081263 fastq.gz 1.4 GB Report
EGAF00008081264 fastq.gz 1.4 GB Report
EGAF00008081265 fastq.gz 1.7 GB Report
EGAF00008081266 fastq.gz 1.8 GB Report
EGAF00008081267 fastq.gz 1.7 GB Report
EGAF00008081268 fastq.gz 1.8 GB Report
EGAF00008081269 fastq.gz 2.0 GB Report
EGAF00008081270 fastq.gz 2.1 GB Report
EGAF00008081271 fastq.gz 1.6 GB Report
EGAF00008081272 fastq.gz 1.6 GB Report
EGAF00008081273 fastq.gz 1.2 GB Report
EGAF00008081274 fastq.gz 1.2 GB Report
EGAF00008081275 fastq.gz 1.4 GB Report
EGAF00008081276 fastq.gz 1.4 GB Report
EGAF00008081277 fastq.gz 1.1 GB Report
EGAF00008081278 fastq.gz 1.1 GB Report
EGAF00008081279 fastq.gz 1.1 GB Report
EGAF00008081280 fastq.gz 1.1 GB Report
EGAF00008081281 fastq.gz 1.7 GB Report
EGAF00008081282 fastq.gz 1.7 GB Report
EGAF00008081283 fastq.gz 1.6 GB Report
EGAF00008081284 fastq.gz 1.8 GB Report
EGAF00008081285 fastq.gz 1.2 GB Report
EGAF00008081286 fastq.gz 1.2 GB Report
EGAF00008081287 fastq.gz 1.7 GB Report
EGAF00008081288 fastq.gz 1.8 GB Report
EGAF00008081289 fastq.gz 1.5 GB Report
EGAF00008081290 fastq.gz 1.5 GB Report
EGAF00008081291 fastq.gz 1.5 GB Report
EGAF00008081292 fastq.gz 1.5 GB Report
EGAF00008081293 fastq.gz 1.3 GB Report
EGAF00008081294 fastq.gz 1.3 GB Report
EGAF00008081295 fastq.gz 1.7 GB Report
EGAF00008081296 fastq.gz 1.7 GB Report
EGAF00008081297 fastq.gz 1.4 GB Report
EGAF00008081298 fastq.gz 1.4 GB Report
EGAF00008081299 fastq.gz 1.6 GB Report
EGAF00008081300 fastq.gz 1.6 GB Report
EGAF00008081301 fastq.gz 1.4 GB Report
EGAF00008081302 fastq.gz 1.4 GB Report
EGAF00008081303 fastq.gz 1.7 GB Report
EGAF00008081304 fastq.gz 1.7 GB Report
EGAF00008081305 fastq.gz 1.6 GB Report
EGAF00008081306 fastq.gz 1.7 GB Report
EGAF00008081307 fastq.gz 1.6 GB Report
EGAF00008081308 fastq.gz 1.6 GB Report
EGAF00008081309 fastq.gz 1.6 GB Report
EGAF00008081310 fastq.gz 1.7 GB Report
EGAF00008081311 fastq.gz 856.6 MB Report
EGAF00008081312 fastq.gz 868.3 MB Report
EGAF00008081313 fastq.gz 1.3 GB Report
EGAF00008081314 fastq.gz 1.3 GB Report
EGAF00008081315 fastq.gz 2.0 GB Report
EGAF00008081316 fastq.gz 2.0 GB Report
EGAF00008081317 fastq.gz 2.1 GB Report
EGAF00008081318 fastq.gz 2.1 GB Report
EGAF00008081319 fastq.gz 1.8 GB Report
EGAF00008081320 fastq.gz 1.8 GB Report
EGAF00008081321 fastq.gz 1.4 GB Report
EGAF00008081322 fastq.gz 1.4 GB Report
EGAF00008081323 fastq.gz 2.0 GB Report
EGAF00008081324 fastq.gz 2.0 GB Report
EGAF00008081325 fastq.gz 1.1 GB Report
EGAF00008081326 fastq.gz 1.2 GB Report
EGAF00008081327 fastq.gz 1.5 GB Report
EGAF00008081328 fastq.gz 1.5 GB Report
EGAF00008081329 fastq.gz 1.4 GB Report
EGAF00008081330 fastq.gz 1.4 GB Report
EGAF00008081331 fastq.gz 1.5 GB Report
EGAF00008081332 fastq.gz 1.5 GB Report
196 Files (322.6 GB)