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DNA methylation (MCIP-seq) of human acute leukemias and healthy donors

MCIP-seq of 77 primary samples obtained from human acute leukemias, namely AML, T-ALL and mixed myeloid/lymphoid leukemias with CpG Island Methylator Phenotype (CIMP). Moreover, MCIP-seq of CD34+ HSPCs from 3 healthy donors is included.

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Data access policy of the EMC-HEMA-AML consortium for adult acute myeloid leukemia data

THE EMC-HEMA-AML CONSORTIUM DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to the genotype data generated by the EMC-HEMA-AML (part of the ERASMUSMC-HEMA consortium) consortium. In signing this agreement, You are agreeing to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly. Definitions: Consortium means the EMC-HEMA-AML Consortium comprised out of the following members: Dr. Bas Wouters, Dr. Ruud Delwel, Roger Mulet-Lázaro, Dr. Mathijs A. Sanders, Dr. Peter J.M. Valk, Data means all and any human genetic data obtained from the Consortium. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled. Acute Myeloid Leukemia is hereafter referred to within the agreement as "AML". Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data from the adult ALL cohort or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. The relevant access committess will see to it that the Data is not used in publications outside the project described in the original application. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to abide by the terms outlined in the Consortium 'Publications Policy' as set out in Schedule 1. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Consortium and the relevant primary collectors and their funders. Suitable wording is provided in the Publications Policy given in Schedule 1. 10. You accept that the Consortium, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognize that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You accept that it may be necessary for the Consortium or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Consortium or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 15. You agree that you will submit a report to the Consortium Data Access Committee, if requested, on completion of the agreed purpose. The Consortium Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 16. You accept that the Data is protected by and subject to international laws, and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 17. You agree to delete the data from your computers after a period of 2 years, unless an extension request is submitted to the DAC. 18. This agreement shall be construed, interpreted and governed by the laws of the Netherlands and shall be subject to the non-exclusive jurisdiction of the Dutch courts. SCHEDULE 1 Publications Policy The primary purpose of the EMC-HEMA-AML Consortium is to accelerate efforts to identify genome sequence variants influencing major causes of human morbidity and mortality, through implementation and analysis of large-scale genome-wide association studies. Additional objectives include the development and validation of informatics and analytical solutions appropriate to the scale and nature of the project, as well as use of the data generated to answer important methodological and biological questions relevant to association studies in general, and in the Netherlands in particular. The Consortium anticipates that data generated from the project will be used by others, such as required for developing new analytical methods, in understanding patterns of polymorphism and in guiding selection of markers to map genes involved in specific diseases. Authors who use data from the project must acknowledge the EMC-HEMA-AML using the following wording "This study makes use of data generated by the EMC-HEMA-AML Consortium. Cite the relevant primary EMC-HEMA-AML publication”. Users should note that the Consortium bears no responsibility for the further analysis or interpretation of these data, over and above that published by the Consortium.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007094 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008096434 bam 1.5 GB
EGAF00008096435 bam 1.2 GB
EGAF00008096436 bam 1.3 GB
EGAF00008096437 bam 1.1 GB
EGAF00008096438 bam 1.6 GB
EGAF00008096439 bam 2.0 GB
EGAF00008096440 bam 1.1 GB
EGAF00008096441 bam 1.6 GB
EGAF00008096442 bam 1.1 GB
EGAF00008096443 bam 1.7 GB
EGAF00008096444 bam 2.3 GB
EGAF00008096445 bam 1.8 GB
EGAF00008096446 bam 1.1 GB
EGAF00008096447 bam 1.7 GB
EGAF00008096448 bam 1.8 GB
EGAF00008096449 bam 1.4 GB
EGAF00008096450 bam 1.5 GB
EGAF00008096451 bam 1.4 GB
EGAF00008096452 bam 979.2 MB
EGAF00008096453 bam 1.5 GB
EGAF00008096454 bam 1.5 GB
EGAF00008096455 bam 1.4 GB
EGAF00008096456 bam 1.2 GB
EGAF00008096457 bam 837.2 MB
EGAF00008096458 bam 1.4 GB
EGAF00008096459 bam 1.5 GB
EGAF00008096460 bam 1.2 GB
EGAF00008096461 bam 842.4 MB
EGAF00008096462 bam 1.1 GB
EGAF00008096463 bam 1.3 GB
EGAF00008096464 bam 827.1 MB
EGAF00008096465 bam 1.5 GB
EGAF00008096466 bam 1.2 GB
EGAF00008096467 bam 985.4 MB
EGAF00008096468 bam 1.8 GB
EGAF00008096469 bam 1.1 GB
EGAF00008096470 bam 1.4 GB
EGAF00008096471 bam 1.5 GB
EGAF00008096472 bam 1.3 GB
EGAF00008096473 bam 1.2 GB
EGAF00008096474 bam 1.5 GB
EGAF00008096475 bam 1.6 GB
EGAF00008096476 bam 1.7 GB
EGAF00008096477 bam 1.6 GB
EGAF00008096478 bam 1.8 GB
EGAF00008096479 bam 1.1 GB
EGAF00008096480 bam 850.2 MB
EGAF00008096481 bam 1.0 GB
EGAF00008096482 bam 992.4 MB
EGAF00008096483 bam 1.6 GB
EGAF00008096484 bam 1.3 GB
EGAF00008096485 bam 1.3 GB
EGAF00008096486 bam 1.6 GB
EGAF00008096487 bam 1.3 GB
EGAF00008096488 bam 2.1 GB
EGAF00008096489 bam 1.1 GB
EGAF00008096490 bam 1.8 GB
EGAF00008096491 bam 1.2 GB
EGAF00008096492 bam 1.4 GB
EGAF00008096493 bam 1.1 GB
EGAF00008096494 bam 857.3 MB
EGAF00008096495 bam 1.5 GB
EGAF00008096496 bam 1.1 GB
EGAF00008096497 bam 1.6 GB
EGAF00008096498 bam 998.7 MB
EGAF00008096499 bam 1.4 GB
EGAF00008096500 bam 1.1 GB
EGAF00008096501 bam 1.1 GB
EGAF00008096502 bam 1.3 GB
EGAF00008096503 bam 1.9 GB
EGAF00008096504 bam 1.8 GB
EGAF00008096505 bam 716.0 MB
EGAF00008096506 bam 1.2 GB
EGAF00008096507 bam 1.6 GB
EGAF00008096508 bam 1.4 GB
EGAF00008096509 bam 1.2 GB
EGAF00008096510 bam 962.4 MB
EGAF00008096511 bam 643.8 MB
EGAF00008096512 bam 1.2 GB
EGAF00008096513 bam 1.2 GB
EGAF00008096514 bam 1.1 GB
EGAF00008096515 bam 1.1 GB
EGAF00008096516 bam 1.4 GB
EGAF00008096517 bam 669.2 MB
EGAF00008096518 bam 1.1 GB
EGAF00008096519 bam 1.2 GB
EGAF00008096520 bam 1.1 GB
EGAF00008096521 bam 1.0 GB
EGAF00008096522 bam 1.8 GB
EGAF00008096523 bam 1.6 GB
EGAF00008096524 bam 1.3 GB
EGAF00008096525 bam 1.9 GB
EGAF00008096526 bam 1.2 GB
EGAF00008096527 bam 823.8 MB
EGAF00008096528 bam 916.2 MB
EGAF00008096529 bam 348.9 MB
EGAF00008096530 bam 1.0 GB
EGAF00008096531 bam 1.5 GB
EGAF00008096532 bam 1.1 GB
EGAF00008096533 bam 1.2 GB
EGAF00008096534 bam 932.5 MB
EGAF00008096535 bam 1.4 GB
EGAF00008096536 bam 760.6 MB
EGAF00008096537 bam 1.6 GB
EGAF00008096538 bam 884.9 MB
EGAF00008096539 bam 1.4 GB
EGAF00008096540 bam 1.3 GB
EGAF00008096541 bam 1.4 GB
EGAF00008096542 bam 801.8 MB
EGAF00008096543 bam 1.6 GB
EGAF00008096544 bam 1.5 GB
EGAF00008096545 bam 991.7 MB
EGAF00008096546 bam 1.1 GB
EGAF00008096547 bam 1.2 GB
EGAF00008096548 bam 973.3 MB
EGAF00008096549 bam 1.3 GB
EGAF00008096550 bam 1.1 GB
EGAF00008096551 bam 1.6 GB
EGAF00008096552 bam 1.3 GB
EGAF00008096553 bam 1.5 GB
EGAF00008096554 bam 1.2 GB
EGAF00008096555 bam 1.9 GB
EGAF00008096556 bam 1.4 GB
EGAF00008096557 bam 1.7 GB
EGAF00008096558 bam 1.2 GB
EGAF00008096559 bam 1.5 GB
EGAF00008096560 bam 1.1 GB
EGAF00008096561 bam 1.6 GB
EGAF00008096562 bam 1.2 GB
EGAF00008096563 bam 1.2 GB
EGAF00008096564 bam 1.8 GB
EGAF00008096565 bam 1.3 GB
EGAF00008096566 bam 1.3 GB
EGAF00008096567 bam 1.3 GB
EGAF00008096568 bam 1.3 GB
EGAF00008096569 bam 1.0 GB
EGAF00008096570 bam 1.2 GB
EGAF00008096571 bam 1.3 GB
EGAF00008096572 bam 1.5 GB
EGAF00008096573 bam 1.6 GB
EGAF00008096574 bam 1.2 GB
EGAF00008096575 bam 1.2 GB
EGAF00008096576 bam 958.4 MB
EGAF00008096577 bam 1.3 GB
EGAF00008096578 bam 1.6 GB
EGAF00008096579 bam 1.4 GB
EGAF00008096580 bam 995.7 MB
EGAF00008096581 bam 811.9 MB
EGAF00008096582 bam 779.1 MB
EGAF00008096583 bam 1.2 GB
EGAF00008096584 bam 862.2 MB
EGAF00008096585 bam 1.9 GB
EGAF00008096586 bam 912.2 MB
EGAF00008096587 bam 1.3 GB
EGAF00008096588 bam 1.2 GB
EGAF00008096589 bam 1.3 GB
EGAF00008096590 bam 532.8 MB
EGAF00008096923 bai 6.7 MB
EGAF00008096926 bai 6.1 MB
EGAF00008096927 bai 6.8 MB
EGAF00008096930 bai 6.0 MB
EGAF00008096935 bai 6.4 MB
EGAF00008096936 bai 5.8 MB
EGAF00008096939 bai 6.7 MB
EGAF00008096941 bai 6.5 MB
EGAF00008096944 bai 6.6 MB
EGAF00008096945 bai 5.9 MB
EGAF00008096949 bai 6.5 MB
EGAF00008096951 bai 5.9 MB
EGAF00008096952 bai 6.5 MB
EGAF00008096953 bai 5.5 MB
EGAF00008096954 bai 5.9 MB
EGAF00008096956 bai 6.8 MB
EGAF00008096957 bai 6.8 MB
EGAF00008096958 bai 5.9 MB
EGAF00008096960 bai 6.6 MB
EGAF00008096963 bai 6.5 MB
EGAF00008096965 bai 6.6 MB
EGAF00008096967 bai 5.5 MB
EGAF00008096969 bai 5.8 MB
EGAF00008096971 bai 3.3 MB
EGAF00008096973 bai 5.9 MB
EGAF00008096974 bai 6.5 MB
EGAF00008096976 bai 6.4 MB
EGAF00008096977 bai 6.7 MB
EGAF00008096980 bai 6.5 MB
EGAF00008096981 bai 6.5 MB
EGAF00008096983 bai 6.0 MB
EGAF00008096984 bai 5.9 MB
EGAF00008096990 bai 6.1 MB
EGAF00008096994 bai 5.8 MB
EGAF00008096998 bai 5.9 MB
EGAF00008096999 bai 5.8 MB
EGAF00008097000 bai 5.8 MB
EGAF00008097010 bai 6.6 MB
EGAF00008097013 bai 5.6 MB
EGAF00008097018 bai 6.3 MB
EGAF00008097019 bai 6.5 MB
EGAF00008097020 bai 5.9 MB
EGAF00008097021 bai 5.7 MB
EGAF00008097024 bai 6.7 MB
EGAF00008097031 bai 5.7 MB
EGAF00008097035 bai 6.3 MB
EGAF00008097036 bai 4.3 MB
EGAF00008097037 bai 6.3 MB
EGAF00008097039 bai 5.5 MB
EGAF00008097043 bai 6.6 MB
EGAF00008097046 bai 6.5 MB
EGAF00008097047 bai 5.9 MB
EGAF00008097048 bai 6.6 MB
EGAF00008097049 bai 5.7 MB
EGAF00008097050 bai 5.7 MB
EGAF00008097052 bai 6.5 MB
EGAF00008097053 bai 6.5 MB
EGAF00008097056 bai 5.8 MB
EGAF00008097058 bai 5.8 MB
EGAF00008097060 bai 6.5 MB
EGAF00008097063 bai 5.6 MB
EGAF00008097064 bai 5.6 MB
EGAF00008097065 bai 5.9 MB
EGAF00008097068 bai 6.9 MB
221 Files (203.4 GB)