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Transcriptome profiling (RNA-seq) of human acute leukemias

Total RNA-seq of blasts derived from 131 adult T-ALL cases, 7 AML cases and 1 mixed myeloid/lymphoid leukemia with CpG Island Methylator Phenotype (CIMP). The other RNA-seq data used in this study has been previously published and is available at EGAD00001007581 (AML) and EGAD00001007646 (CD34+ cells).

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Data access policy of the EMC-HEMA-AML consortium for adult acute myeloid leukemia data

THE EMC-HEMA-AML CONSORTIUM DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to the genotype data generated by the EMC-HEMA-AML (part of the ERASMUSMC-HEMA consortium) consortium. In signing this agreement, You are agreeing to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly. Definitions: Consortium means the EMC-HEMA-AML Consortium comprised out of the following members: Dr. Bas Wouters, Dr. Ruud Delwel, Roger Mulet-Lázaro, Dr. Mathijs A. Sanders, Dr. Peter J.M. Valk, Data means all and any human genetic data obtained from the Consortium. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled. Acute Myeloid Leukemia is hereafter referred to within the agreement as "AML". Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data from the adult ALL cohort or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. The relevant access committess will see to it that the Data is not used in publications outside the project described in the original application. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to abide by the terms outlined in the Consortium 'Publications Policy' as set out in Schedule 1. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Consortium and the relevant primary collectors and their funders. Suitable wording is provided in the Publications Policy given in Schedule 1. 10. You accept that the Consortium, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognize that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You accept that it may be necessary for the Consortium or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Consortium or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 15. You agree that you will submit a report to the Consortium Data Access Committee, if requested, on completion of the agreed purpose. The Consortium Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 16. You accept that the Data is protected by and subject to international laws, and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 17. You agree to delete the data from your computers after a period of 2 years, unless an extension request is submitted to the DAC. 18. This agreement shall be construed, interpreted and governed by the laws of the Netherlands and shall be subject to the non-exclusive jurisdiction of the Dutch courts. SCHEDULE 1 Publications Policy The primary purpose of the EMC-HEMA-AML Consortium is to accelerate efforts to identify genome sequence variants influencing major causes of human morbidity and mortality, through implementation and analysis of large-scale genome-wide association studies. Additional objectives include the development and validation of informatics and analytical solutions appropriate to the scale and nature of the project, as well as use of the data generated to answer important methodological and biological questions relevant to association studies in general, and in the Netherlands in particular. The Consortium anticipates that data generated from the project will be used by others, such as required for developing new analytical methods, in understanding patterns of polymorphism and in guiding selection of markers to map genes involved in specific diseases. Authors who use data from the project must acknowledge the EMC-HEMA-AML using the following wording "This study makes use of data generated by the EMC-HEMA-AML Consortium. Cite the relevant primary EMC-HEMA-AML publication”. Users should note that the Consortium bears no responsibility for the further analysis or interpretation of these data, over and above that published by the Consortium.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007094 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008101760 bam 7.7 GB
EGAF00008101761 bam 12.6 GB
EGAF00008101762 bam 9.7 GB
EGAF00008101763 bam 14.1 GB
EGAF00008101764 bam 14.8 GB
EGAF00008101765 bam 10.0 GB
EGAF00008101766 bam 11.3 GB
EGAF00008101767 bam 9.4 GB
EGAF00008101768 bam 10.5 GB
EGAF00008101769 bam 11.5 GB
EGAF00008101770 bam 11.3 GB
EGAF00008101771 bam 10.7 GB
EGAF00008101772 bam 4.2 GB
EGAF00008101773 bam 10.0 GB
EGAF00008101774 bam 12.3 GB
EGAF00008101775 bam 10.8 GB
EGAF00008101776 bam 12.2 GB
EGAF00008101777 bam 15.6 GB
EGAF00008101778 bam 11.0 GB
EGAF00008101779 bam 10.5 GB
EGAF00008101780 bam 12.8 GB
EGAF00008101781 bam 7.9 GB
EGAF00008101782 bam 7.3 GB
EGAF00008101783 bam 9.9 GB
EGAF00008101784 bam 9.3 GB
EGAF00008101785 bam 16.3 GB
EGAF00008101786 bam 10.2 GB
EGAF00008101787 bam 12.3 GB
EGAF00008101788 bam 7.1 GB
EGAF00008101789 bam 8.5 GB
EGAF00008101790 bam 11.1 GB
EGAF00008101791 bam 13.9 GB
EGAF00008101792 bam 12.0 GB
EGAF00008101793 bam 14.4 GB
EGAF00008101794 bam 3.8 GB
EGAF00008101795 bam 11.6 GB
EGAF00008101796 bam 4.1 GB
EGAF00008101797 bam 5.0 GB
EGAF00008101798 bam 4.6 GB
EGAF00008101799 bam 11.6 GB
EGAF00008101800 bam 10.3 GB
EGAF00008101801 bam 4.8 GB
EGAF00008101802 bam 11.8 GB
EGAF00008101803 bam 8.1 GB
EGAF00008101804 bam 7.6 GB
EGAF00008101805 bam 7.1 GB
EGAF00008101806 bam 9.4 GB
EGAF00008101807 bam 10.1 GB
EGAF00008101808 bam 10.6 GB
EGAF00008101809 bam 15.0 GB
EGAF00008101810 bam 14.8 GB
EGAF00008101811 bam 10.2 GB
EGAF00008101812 bam 8.3 GB
EGAF00008101813 bam 11.5 GB
EGAF00008101814 bam 10.5 GB
EGAF00008101815 bam 14.3 GB
EGAF00008101816 bam 15.3 GB
EGAF00008101817 bam 15.2 GB
EGAF00008101818 bam 11.9 GB
EGAF00008101819 bam 17.1 GB
EGAF00008101820 bam 14.1 GB
EGAF00008101821 bam 4.4 GB
EGAF00008101822 bam 14.1 GB
EGAF00008101823 bam 11.5 GB
EGAF00008101824 bam 12.3 GB
EGAF00008101825 bam 14.8 GB
EGAF00008101826 bam 11.3 GB
EGAF00008101827 bam 11.1 GB
EGAF00008101828 bam 12.4 GB
EGAF00008101829 bam 9.5 GB
EGAF00008101830 bam 10.2 GB
EGAF00008101831 bam 9.7 GB
EGAF00008101832 bam 12.5 GB
EGAF00008101833 bam 6.2 GB
EGAF00008101834 bam 12.3 GB
EGAF00008101835 bam 12.2 GB
EGAF00008101836 bam 15.0 GB
EGAF00008101837 bam 12.7 GB
EGAF00008101838 bam 10.5 GB
EGAF00008101839 bam 13.7 GB
EGAF00008101840 bam 14.4 GB
EGAF00008101841 bam 10.0 GB
EGAF00008101842 bam 11.4 GB
EGAF00008101843 bam 9.7 GB
EGAF00008101844 bam 9.7 GB
EGAF00008101845 bam 14.3 GB
EGAF00008101846 bam 16.7 GB
EGAF00008101847 bam 4.3 GB
EGAF00008101848 bam 4.1 GB
EGAF00008101849 bam 4.9 GB
EGAF00008101850 bam 4.0 GB
EGAF00008101851 bam 10.7 GB
EGAF00008101852 bam 9.7 GB
EGAF00008101853 bam 19.3 GB
EGAF00008101854 bam 13.6 GB
EGAF00008101855 bam 18.9 GB
EGAF00008101856 bam 10.2 GB
EGAF00008101857 bam 4.6 GB
EGAF00008101858 bam 4.8 GB
EGAF00008101859 bam 11.2 GB
EGAF00008101860 bam 4.3 GB
EGAF00008101861 bam 14.4 GB
EGAF00008101862 bam 10.7 GB
EGAF00008101863 bam 6.5 GB
EGAF00008101864 bam 10.8 GB
EGAF00008101865 bam 19.6 GB
EGAF00008101866 bam 11.8 GB
EGAF00008101867 bam 21.6 GB
EGAF00008101868 bam 12.1 GB
EGAF00008101869 bam 12.0 GB
EGAF00008101870 bam 12.9 GB
EGAF00008101871 bam 12.4 GB
EGAF00008101872 bam 14.1 GB
EGAF00008101873 bam 13.3 GB
EGAF00008101874 bam 13.2 GB
EGAF00008101875 bam 18.2 GB
EGAF00008101876 bam 13.9 GB
EGAF00008101877 bam 11.3 GB
EGAF00008101878 bam 13.2 GB
EGAF00008101879 bam 10.5 GB
EGAF00008101880 bam 18.9 GB
EGAF00008101881 bam 12.2 GB
EGAF00008101882 bam 9.6 GB
EGAF00008101883 bam 11.8 GB
EGAF00008101884 bam 12.5 GB
EGAF00008101885 bam 11.5 GB
EGAF00008101886 bam 11.7 GB
EGAF00008101887 bam 12.4 GB
EGAF00008101888 bam 9.3 GB
EGAF00008101889 bam 10.8 GB
EGAF00008101890 bam 12.0 GB
EGAF00008101891 bam 5.0 GB
EGAF00008101892 bam 4.4 GB
EGAF00008101893 bam 3.8 GB
EGAF00008101894 bam 3.2 GB
EGAF00008101895 bam 4.1 GB
EGAF00008101896 bam 4.5 GB
EGAF00008101897 bam 4.9 GB
EGAF00008101898 bam 4.9 GB
EGAF00008102011 bai 5.6 MB
EGAF00008102012 bai 5.4 MB
EGAF00008102013 bai 5.9 MB
EGAF00008102014 bai 6.0 MB
EGAF00008102015 bai 5.4 MB
EGAF00008102016 bai 5.3 MB
EGAF00008102017 bai 5.7 MB
EGAF00008102018 bai 5.6 MB
EGAF00008102019 bai 5.9 MB
EGAF00008102020 bai 5.8 MB
EGAF00008102021 bai 5.8 MB
EGAF00008102022 bai 5.5 MB
EGAF00008102023 bai 5.5 MB
EGAF00008102024 bai 5.5 MB
EGAF00008102025 bai 5.9 MB
EGAF00008102026 bai 5.7 MB
EGAF00008102027 bai 5.5 MB
EGAF00008102028 bai 5.9 MB
EGAF00008102029 bai 5.4 MB
EGAF00008102030 bai 5.4 MB
EGAF00008102031 bai 5.7 MB
EGAF00008102032 bai 5.6 MB
EGAF00008102033 bai 5.8 MB
EGAF00008102034 bai 5.5 MB
EGAF00008102035 bai 5.7 MB
EGAF00008102036 bai 6.0 MB
EGAF00008102037 bai 5.1 MB
EGAF00008102038 bai 6.0 MB
EGAF00008102039 bai 5.7 MB
EGAF00008102040 bai 5.9 MB
EGAF00008102041 bai 6.1 MB
EGAF00008102042 bai 5.9 MB
EGAF00008102043 bai 5.6 MB
EGAF00008102044 bai 5.9 MB
EGAF00008102045 bai 5.6 MB
EGAF00008102046 bai 5.4 MB
EGAF00008102047 bai 5.9 MB
EGAF00008102048 bai 5.7 MB
EGAF00008102049 bai 5.5 MB
EGAF00008102050 bai 5.7 MB
EGAF00008102051 bai 5.7 MB
EGAF00008102052 bai 5.7 MB
EGAF00008102053 bai 5.7 MB
EGAF00008102054 bai 6.2 MB
EGAF00008102055 bai 5.6 MB
EGAF00008102056 bai 6.2 MB
EGAF00008102057 bai 5.7 MB
EGAF00008102058 bai 4.7 MB
EGAF00008102059 bai 5.7 MB
EGAF00008102060 bai 6.1 MB
EGAF00008102061 bai 5.6 MB
EGAF00008102062 bai 5.7 MB
EGAF00008102063 bai 5.6 MB
EGAF00008102064 bai 5.8 MB
EGAF00008102065 bai 5.1 MB
EGAF00008102066 bai 5.7 MB
EGAF00008102067 bai 5.4 MB
EGAF00008102068 bai 5.6 MB
EGAF00008102069 bai 5.7 MB
EGAF00008102070 bai 5.1 MB
EGAF00008102071 bai 5.7 MB
EGAF00008102072 bai 5.4 MB
EGAF00008102073 bai 5.5 MB
EGAF00008102074 bai 5.7 MB
EGAF00008102075 bai 5.9 MB
EGAF00008102076 bai 5.8 MB
EGAF00008102077 bai 5.8 MB
EGAF00008102078 bai 5.2 MB
EGAF00008102079 bai 5.2 MB
EGAF00008102080 bai 5.9 MB
EGAF00008102081 bai 5.6 MB
EGAF00008102082 bai 6.2 MB
EGAF00008102083 bai 5.6 MB
EGAF00008102084 bai 5.7 MB
EGAF00008102085 bai 4.7 MB
EGAF00008102086 bai 5.1 MB
EGAF00008102087 bai 5.5 MB
EGAF00008102088 bai 5.6 MB
EGAF00008102089 bai 5.7 MB
EGAF00008102090 bai 5.7 MB
EGAF00008102091 bai 6.0 MB
EGAF00008102092 bai 5.7 MB
EGAF00008102093 bai 5.6 MB
EGAF00008102094 bai 5.9 MB
EGAF00008102095 bai 5.7 MB
EGAF00008102096 bai 5.6 MB
EGAF00008102097 bai 5.6 MB
EGAF00008102098 bai 5.1 MB
EGAF00008102099 bai 5.9 MB
EGAF00008102100 bai 6.0 MB
EGAF00008102101 bai 5.5 MB
EGAF00008102102 bai 5.1 MB
EGAF00008102103 bai 5.6 MB
EGAF00008102104 bai 5.7 MB
EGAF00008102105 bai 5.7 MB
EGAF00008102106 bai 5.6 MB
EGAF00008102107 bai 5.5 MB
EGAF00008102108 bai 5.8 MB
EGAF00008102109 bai 5.8 MB
EGAF00008102110 bai 5.9 MB
EGAF00008102111 bai 5.6 MB
EGAF00008102112 bai 5.7 MB
EGAF00008102113 bai 5.9 MB
EGAF00008102114 bai 5.4 MB
EGAF00008102115 bai 5.6 MB
EGAF00008102116 bai 5.3 MB
EGAF00008102117 bai 5.8 MB
EGAF00008102118 bai 6.0 MB
EGAF00008102119 bai 5.3 MB
EGAF00008102120 bai 5.5 MB
EGAF00008102121 bai 5.5 MB
EGAF00008102122 bai 5.9 MB
EGAF00008102123 bai 5.7 MB
EGAF00008102124 bai 6.1 MB
EGAF00008102125 bai 5.9 MB
EGAF00008102126 bai 5.6 MB
EGAF00008102127 bai 6.3 MB
EGAF00008102128 bai 5.7 MB
EGAF00008102129 bai 5.7 MB
EGAF00008102130 bai 5.7 MB
EGAF00008102131 bai 5.4 MB
EGAF00008102132 bai 5.2 MB
EGAF00008102133 bai 5.4 MB
EGAF00008102134 bai 5.8 MB
EGAF00008102135 bai 5.7 MB
EGAF00008102136 bai 5.5 MB
EGAF00008102137 bai 4.8 MB
EGAF00008102138 bai 5.6 MB
EGAF00008102139 bai 4.8 MB
EGAF00008102140 bai 5.6 MB
EGAF00008102141 bai 5.4 MB
EGAF00008102142 bai 5.3 MB
271 Files (1.5 TB)