The Genetic Landscape of Ocular Adnexa MALT Lymphoma Reveals Frequent Aberrations in NFAT and MEF2B Signaling Pathways

69 OAMZL patients were sequenced on the Illumina platform. The data files are available in BAM format.

69 samples
DAC: EGAC00001003298
Technology: HiSeq X Ten

Access Policy1 Study Files

Metadata

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None DUO:0000001 (version: 2021-02-23)data use permissionA data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used.
DS DUO:0000007 (version: 2021-02-23)disease specific researchThis data use permission indicates that use is allowed provided it is related to the specified disease.ModifiersMONDO:0002889
RS DUO:0000012 (version: 2021-02-23)research specific restrictionsThis data use modifier indicates that use is limited to studies of a certain research type.
NMDS DUO:0000015 (version: 2021-02-23)no general methods researchThis data use modifier indicates that use does not allow methods development research (e.g., development of software or algorithms).
NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
PUB DUO:0000019 (version: 2021-02-23)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
IRB DUO:0000021 (version: 2021-02-23)ethics approval requiredThis data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
TS DUO:0000025 (version: 2021-02-23)time limit on useThis data use modifier indicates that use is approved for a specific number of months.
US DUO:0000026 (version: 2021-02-23)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
IS DUO:0000028 (version: 2021-02-23)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.
RTN DUO:0000029 (version: 2021-02-23)return to database or resourceThis data use modifier indicates that the requestor must return derived/enriched data to the database/resource.
NPOA DUO:0000044 (version: 2021-02-23)population origins or ancestry research prohibitedThis data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.
NPU DUO:0000045 (version: 2021-02-23)not for profit organisation use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations.
NCU DUO:0000046 (version: 2021-02-23)non-commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit use.

DAA for OAMZL

The policy can be accessed through the URL.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001006631	The Genetic Landscape of Ocular Adnexa MALT Lymphoma Reveals Frequent Aberrations in NFAT and MEF2B Signaling Pathways	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00008108772	fastq.gz	5.6 GB
EGAF00008108773	fastq.gz	6.5 GB
EGAF00008108774	fastq.gz	6.1 GB
EGAF00008108775	fastq.gz	6.9 GB
EGAF00008108776	fastq.gz	4.8 GB
EGAF00008108777	fastq.gz	5.4 GB
EGAF00008108778	fastq.gz	2.8 GB
EGAF00008108779	fastq.gz	3.4 GB
EGAF00008108780	fastq.gz	4.7 GB
EGAF00008108781	fastq.gz	5.7 GB
EGAF00008108782	fastq.gz	2.5 GB
EGAF00008108783	fastq.gz	3.0 GB
EGAF00008108784	fastq.gz	2.3 GB
EGAF00008108785	fastq.gz	2.7 GB
EGAF00008108786	fastq.gz	920.8 MB
EGAF00008108787	fastq.gz	1.0 GB
EGAF00008108788	fastq.gz	1.5 GB
EGAF00008108789	fastq.gz	1.7 GB
EGAF00008108790	fastq.gz	3.8 GB
EGAF00008108791	fastq.gz	4.4 GB
EGAF00008108792	fastq.gz	2.0 GB
EGAF00008108793	fastq.gz	2.5 GB
EGAF00008108794	fastq.gz	2.4 GB
EGAF00008108795	fastq.gz	2.9 GB
EGAF00008108796	fastq.gz	1.6 GB
EGAF00008108797	fastq.gz	1.9 GB
EGAF00008108798	fastq.gz	1.4 GB
EGAF00008108799	fastq.gz	1.6 GB
EGAF00008108800	fastq.gz	4.1 GB
EGAF00008108801	fastq.gz	4.8 GB
EGAF00008108802	fastq.gz	1.9 GB
EGAF00008108803	fastq.gz	2.2 GB
EGAF00008108804	fastq.gz	1.7 GB
EGAF00008108805	fastq.gz	2.0 GB
EGAF00008108806	fastq.gz	2.8 GB
EGAF00008108807	fastq.gz	3.3 GB
EGAF00008108808	fastq.gz	3.9 GB
EGAF00008108809	fastq.gz	4.5 GB
EGAF00008108810	fastq.gz	2.2 GB
EGAF00008108811	fastq.gz	2.6 GB
EGAF00008108812	fastq.gz	2.2 GB
EGAF00008108813	fastq.gz	2.6 GB
EGAF00008108814	fastq.gz	1.7 GB
EGAF00008108815	fastq.gz	2.1 GB
EGAF00008108816	fastq.gz	2.3 GB
EGAF00008108817	fastq.gz	2.7 GB
EGAF00008108818	fastq.gz	5.3 GB
EGAF00008108819	fastq.gz	6.1 GB
EGAF00008108820	fastq.gz	1.8 GB
EGAF00008108821	fastq.gz	2.2 GB
EGAF00008108822	fastq.gz	2.1 GB
EGAF00008108823	fastq.gz	2.5 GB
EGAF00008108824	fastq.gz	5.8 GB
EGAF00008108825	fastq.gz	6.9 GB
EGAF00008108826	fastq.gz	940.8 MB
EGAF00008108827	fastq.gz	1.1 GB
EGAF00008108828	fastq.gz	1.4 GB
EGAF00008108829	fastq.gz	1.6 GB
EGAF00008108830	fastq.gz	1.6 GB
EGAF00008108831	fastq.gz	1.9 GB
EGAF00008108832	fastq.gz	4.8 GB
EGAF00008108833	fastq.gz	5.7 GB
EGAF00008108834	fastq.gz	1.2 GB
EGAF00008108835	fastq.gz	1.3 GB
EGAF00008108836	fastq.gz	1.2 GB
EGAF00008108837	fastq.gz	1.4 GB
EGAF00008108838	fastq.gz	5.3 GB
EGAF00008108839	fastq.gz	6.1 GB
EGAF00008108840	fastq.gz	1.2 GB
EGAF00008108841	fastq.gz	1.4 GB
EGAF00008108842	fastq.gz	3.4 GB
EGAF00008108843	fastq.gz	4.0 GB
EGAF00008108844	fastq.gz	4.4 GB
EGAF00008108845	fastq.gz	5.1 GB
EGAF00008108846	fastq.gz	1.5 GB
EGAF00008108847	fastq.gz	1.7 GB
EGAF00008108848	fastq.gz	1.1 GB
EGAF00008108849	fastq.gz	1.2 GB
EGAF00008108850	fastq.gz	1.7 GB
EGAF00008108851	fastq.gz	2.0 GB
EGAF00008108852	fastq.gz	3.6 GB
EGAF00008108853	fastq.gz	4.2 GB
EGAF00008108854	fastq.gz	1.1 GB
EGAF00008108855	fastq.gz	1.3 GB
EGAF00008108856	fastq.gz	1.8 GB
EGAF00008108857	fastq.gz	2.1 GB
EGAF00008108858	fastq.gz	1.2 GB
EGAF00008108859	fastq.gz	1.4 GB
EGAF00008108860	fastq.gz	3.6 GB
EGAF00008108861	fastq.gz	4.2 GB
EGAF00008108862	fastq.gz	2.5 GB
EGAF00008108863	fastq.gz	3.0 GB
EGAF00008108864	fastq.gz	2.3 GB
EGAF00008108865	fastq.gz	2.8 GB
EGAF00008108866	fastq.gz	4.2 GB
EGAF00008108867	fastq.gz	5.1 GB
EGAF00008108868	fastq.gz	3.7 GB
EGAF00008108869	fastq.gz	4.0 GB
EGAF00008108870	fastq.gz	2.7 GB
EGAF00008108871	fastq.gz	3.1 GB
EGAF00008108872	fastq.gz	2.2 GB
EGAF00008108873	fastq.gz	2.6 GB
EGAF00008108874	fastq.gz	6.5 GB
EGAF00008108875	fastq.gz	7.6 GB
EGAF00008108876	fastq.gz	5.6 GB
EGAF00008108877	fastq.gz	6.5 GB
EGAF00008108878	fastq.gz	3.6 GB
EGAF00008108879	fastq.gz	4.3 GB
EGAF00008108880	fastq.gz	3.9 GB
EGAF00008108881	fastq.gz	4.6 GB
EGAF00008108882	fastq.gz	1.2 GB
EGAF00008108883	fastq.gz	1.4 GB
EGAF00008108884	fastq.gz	5.1 GB
EGAF00008108885	fastq.gz	6.1 GB
EGAF00008108886	fastq.gz	941.2 MB
EGAF00008108887	fastq.gz	1.1 GB
EGAF00008108888	fastq.gz	793.6 MB
EGAF00008108889	fastq.gz	884.5 MB
EGAF00008108890	fastq.gz	4.4 GB
EGAF00008108891	fastq.gz	5.2 GB
EGAF00008108892	fastq.gz	2.9 GB
EGAF00008108893	fastq.gz	3.5 GB
EGAF00008108894	fastq.gz	2.9 GB
EGAF00008108895	fastq.gz	3.4 GB
EGAF00008108896	fastq.gz	3.3 GB
EGAF00008108897	fastq.gz	3.9 GB
EGAF00008108898	fastq.gz	613.6 MB
EGAF00008108899	fastq.gz	709.1 MB
EGAF00008108900	fastq.gz	3.1 GB
EGAF00008108901	fastq.gz	3.7 GB
EGAF00008108902	fastq.gz	2.7 GB
EGAF00008108903	fastq.gz	3.2 GB
EGAF00008108904	fastq.gz	3.8 GB
EGAF00008108905	fastq.gz	4.5 GB
EGAF00008108906	fastq.gz	7.6 GB
EGAF00008108907	fastq.gz	8.9 GB
EGAF00008108908	fastq.gz	3.6 GB
EGAF00008108909	fastq.gz	4.1 GB
138 Files (437.4 GB)