About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Cell-free DNA sequencing data of healthy control, atrophic gastritis, and gastric cancer patients’ blood

Sample cohort (n=48) is consisted of healthy, atrophic gastritis and gastric cancer patients. Some of the gastric cancer patients samples are collected at the separate time points: -1 before the operation; -2 after the operation; -3 during the control visit. For the hybridisation capture of the genes unique 15 gastric cancer-related gene panel was developed and very deep sequencing using TruSight Oncology Unique Molecular Identifier (UMI) Reagents (Illumina) was used.

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Plasma Cell-free DNA Sequencing Study Data Access Policy

The scope of data access and publication is described in the approval of the Kaunas Regional Bioethics Committee (BE-2-31). Data is anonymised and encrypted and is available to registered users. There is a corresponding Data Access Committee (DAC) - Cell-free DNA Sequencing Data Access Committee - that determines access permissions. If you need to request access to this data set, please contact: Institute for digestive research (LSMU): Contact person: Greta Varkalaitė Email: greta.varkalaite@lsmuni.lt

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007308 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008096256 fastq.gz 6.3 GB Report
EGAF00008096257 fastq.gz 6.4 GB Report
EGAF00008096258 fastq.gz 9.9 GB Report
EGAF00008096259 fastq.gz 9.9 GB Report
EGAF00008096260 fastq.gz 3.1 GB Report
EGAF00008096261 fastq.gz 3.3 GB Report
EGAF00008096262 fastq.gz 6.8 GB Report
EGAF00008096263 fastq.gz 7.2 GB Report
EGAF00008096264 fastq.gz 9.3 GB Report
EGAF00008096265 fastq.gz 9.4 GB Report
EGAF00008096266 fastq.gz 10.8 GB Report
EGAF00008096267 fastq.gz 11.0 GB Report
EGAF00008096268 fastq.gz 8.1 GB Report
EGAF00008096269 fastq.gz 8.3 GB Report
EGAF00008096270 fastq.gz 9.1 GB Report
EGAF00008096271 fastq.gz 9.4 GB Report
EGAF00008096272 fastq.gz 6.9 GB Report
EGAF00008096273 fastq.gz 7.0 GB Report
EGAF00008096274 fastq.gz 9.8 GB Report
EGAF00008096275 fastq.gz 10.0 GB Report
EGAF00008096276 fastq.gz 10.7 GB Report
EGAF00008096277 fastq.gz 10.9 GB Report
EGAF00008096278 fastq.gz 9.7 GB Report
EGAF00008096279 fastq.gz 9.7 GB Report
EGAF00008096280 fastq.gz 8.8 GB Report
EGAF00008096281 fastq.gz 9.0 GB Report
EGAF00008096282 fastq.gz 10.8 GB Report
EGAF00008096283 fastq.gz 11.0 GB Report
EGAF00008096284 fastq.gz 8.0 GB Report
EGAF00008096285 fastq.gz 8.0 GB Report
EGAF00008096286 fastq.gz 8.6 GB Report
EGAF00008096287 fastq.gz 8.9 GB Report
EGAF00008096288 fastq.gz 10.0 GB Report
EGAF00008096289 fastq.gz 10.0 GB Report
EGAF00008096290 fastq.gz 10.3 GB Report
EGAF00008096291 fastq.gz 10.4 GB Report
EGAF00008096292 fastq.gz 7.5 GB Report
EGAF00008096293 fastq.gz 7.6 GB Report
EGAF00008096294 fastq.gz 9.8 GB Report
EGAF00008096295 fastq.gz 10.0 GB Report
EGAF00008096296 fastq.gz 10.8 GB Report
EGAF00008096297 fastq.gz 10.7 GB Report
EGAF00008096298 fastq.gz 7.7 GB Report
EGAF00008096299 fastq.gz 7.7 GB Report
EGAF00008096300 fastq.gz 7.9 GB Report
EGAF00008096301 fastq.gz 8.1 GB Report
EGAF00008096302 fastq.gz 12.2 GB Report
EGAF00008096303 fastq.gz 12.2 GB Report
EGAF00008096304 fastq.gz 9.8 GB Report
EGAF00008096305 fastq.gz 10.1 GB Report
EGAF00008096306 fastq.gz 10.8 GB Report
EGAF00008096307 fastq.gz 11.0 GB Report
EGAF00008096308 fastq.gz 10.5 GB Report
EGAF00008096309 fastq.gz 10.6 GB Report
EGAF00008096310 fastq.gz 9.6 GB Report
EGAF00008096311 fastq.gz 9.6 GB Report
EGAF00008096312 fastq.gz 10.4 GB Report
EGAF00008096313 fastq.gz 10.6 GB Report
EGAF00008096314 fastq.gz 11.4 GB Report
EGAF00008096315 fastq.gz 11.7 GB Report
EGAF00008096316 fastq.gz 16.6 GB Report
EGAF00008096317 fastq.gz 16.6 GB Report
EGAF00008096318 fastq.gz 9.5 GB Report
EGAF00008096319 fastq.gz 9.9 GB Report
EGAF00008096320 fastq.gz 7.2 GB Report
EGAF00008096321 fastq.gz 7.4 GB Report
EGAF00008096322 fastq.gz 7.6 GB Report
EGAF00008096323 fastq.gz 7.7 GB Report
EGAF00008096324 fastq.gz 11.9 GB Report
EGAF00008096325 fastq.gz 11.9 GB Report
EGAF00008096326 fastq.gz 16.5 GB Report
EGAF00008096327 fastq.gz 17.1 GB Report
EGAF00008096328 fastq.gz 5.7 GB Report
EGAF00008096329 fastq.gz 6.0 GB Report
EGAF00008096330 fastq.gz 4.2 GB Report
EGAF00008096331 fastq.gz 4.2 GB Report
EGAF00008096332 fastq.gz 6.6 GB Report
EGAF00008096333 fastq.gz 6.9 GB Report
EGAF00008096334 fastq.gz 4.9 GB Report
EGAF00008096335 fastq.gz 5.0 GB Report
EGAF00008096336 fastq.gz 2.9 GB Report
EGAF00008096337 fastq.gz 3.0 GB Report
EGAF00008096338 fastq.gz 5.9 GB Report
EGAF00008096339 fastq.gz 5.8 GB Report
EGAF00008096340 fastq.gz 7.0 GB Report
EGAF00008096341 fastq.gz 7.1 GB Report
EGAF00008096342 fastq.gz 8.8 GB Report
EGAF00008096343 fastq.gz 9.1 GB Report
EGAF00008096344 fastq.gz 7.2 GB Report
EGAF00008096345 fastq.gz 7.3 GB Report
EGAF00008096346 fastq.gz 2.2 GB Report
EGAF00008096347 fastq.gz 2.3 GB Report
EGAF00008096348 fastq.gz 2.9 GB Report
EGAF00008096349 fastq.gz 2.9 GB Report
EGAF00008096350 fastq.gz 2.9 GB Report
EGAF00008096351 fastq.gz 3.0 GB Report
96 Files (818.7 GB)