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Whole exome sequencing of SarBC-01- and UroBC-01-related samples.

This dataset contains raw FASTQ files from DNA of SarBC-01-related samples (SarBC-01 patient Germline, SarBC-01 patient Urothelial tumor, SarBC-01 patient Sarcomatoid tumor, SarBC-01 Passage 6 organoids, SarBC-01 Passage 20 organoids) and UroBC-01 related samples (UroBC-01 patient Germline, UroBC-01 patient Urothelial tumor, UroBC-01 Passage 19 organoids, UroBC-01 Passage 6 organoids). DNA was extracted from FFPE tissue, using RecoverAll RNA/DNA extraction kit (Invitrogen, Carlsbad, CA, USA, AM1975) followed by incubation with Uracil-DNA Glycosylase, and fresh or flash frozen tissue, using Quick-DNA/RNA Miniprep kit (Zymo Research, Irvine, CA, USA, D7001). Twist Human Core Exome + RefSeq + Mito-Panel kit (Twist Bioscience, 102031) was used for the whole exome capturing. Sequencing was performed on Illumina NovaSeq 6000 using paired-end 100-bp reads.

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ATTENTION: Please check the following policy and the documents/information to provide in order to get access to the requested datasets. You can find the governing policy on Zenodo under the link: https://zenodo.org/records/12517622 Please provide all information as requested in the document to the MF-DAC. Additionally, you can find more information about the Data Access Committee of the Medical Faculty of the University of Basel (MF-DAC) under the following link on Zenodo: https://zenodo.org/records/10137776

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007430 Cancer Genomics
  • Updated policy to match request of MF-DAC.
  • Updated policy to match request of MF-DAC.
  • Set back the correct policy number.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008157593 fastq.gz 3.2 GB
EGAF00008157594 fastq.gz 3.3 GB
EGAF00008157595 fastq.gz 4.2 GB
EGAF00008157596 fastq.gz 4.3 GB
EGAF00008157597 fastq.gz 3.7 GB
EGAF00008157598 fastq.gz 3.8 GB
EGAF00008157599 fastq.gz 4.4 GB
EGAF00008157600 fastq.gz 4.5 GB
EGAF00008157601 fastq.gz 4.3 GB
EGAF00008157602 fastq.gz 4.4 GB
EGAF00008157603 fastq.gz 4.2 GB
EGAF00008157604 fastq.gz 4.4 GB
EGAF00008157605 fastq.gz 4.6 GB
EGAF00008157606 fastq.gz 4.6 GB
EGAF00008157607 fastq.gz 4.1 GB
EGAF00008157608 fastq.gz 4.2 GB
EGAF00008157609 fastq.gz 4.2 GB
EGAF00008157610 fastq.gz 4.3 GB
18 Files (74.8 GB)