About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Single-cell short-read transcriptomes from CH, MDS and AML patients with splicing factor mutations

Single-cell RNA sequencing from CH (n = 2), MDS (n = 6, MDS02 in 2 replicates) and AML (n = 1, in 2 replicates) samples with mutations in splicing factors (SF3B1 - n = 8, U2AF1 n = 1). cDNA from 10x Genomics 3' V3.

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Details for GoT-Splice data access

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom the Single-Cell Multiomics Data Team Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Single-Cell Multiomics Data Team Access Committee and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Single-Cell Multiomics Data Team Access Committee: 413 East 69th Street, Room 1428 New York, NY 10021

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007402 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008204178 fastq.gz 7.1 GB Report
EGAF00008204179 fastq.gz 16.0 GB Report
EGAF00008204180 fastq.gz 6.7 GB Report
EGAF00008204181 fastq.gz 15.3 GB Report
EGAF00008204182 fastq.gz 1.3 GB Report
EGAF00008204183 fastq.gz 3.5 GB Report
EGAF00008204184 fastq.gz 1.5 GB Report
EGAF00008204185 fastq.gz 3.4 GB Report
EGAF00008204186 fastq.gz 3.0 GB Report
EGAF00008204187 fastq.gz 7.0 GB Report
EGAF00008204188 fastq.gz 3.0 GB Report
EGAF00008204189 fastq.gz 6.9 GB Report
EGAF00008204190 fastq.gz 1.7 GB Report
EGAF00008204191 fastq.gz 4.1 GB Report
EGAF00008204192 fastq.gz 1.7 GB Report
EGAF00008204193 fastq.gz 4.1 GB Report
EGAF00008204194 fastq.gz 2.6 GB Report
EGAF00008204195 fastq.gz 6.1 GB Report
EGAF00008204196 fastq.gz 2.5 GB Report
EGAF00008204197 fastq.gz 6.1 GB Report
EGAF00008204198 fastq.gz 2.7 GB Report
EGAF00008204199 fastq.gz 6.5 GB Report
EGAF00008204200 fastq.gz 2.7 GB Report
EGAF00008204201 fastq.gz 6.4 GB Report
EGAF00008204202 fastq.gz 3.1 GB Report
EGAF00008204203 fastq.gz 7.5 GB Report
EGAF00008204204 fastq.gz 3.1 GB Report
EGAF00008204205 fastq.gz 7.4 GB Report
EGAF00008204206 fastq.gz 1.6 GB Report
EGAF00008204207 fastq.gz 3.9 GB Report
EGAF00008204208 fastq.gz 1.6 GB Report
EGAF00008204209 fastq.gz 3.9 GB Report
EGAF00008204210 fastq.gz 3.6 GB Report
EGAF00008204211 fastq.gz 8.5 GB Report
EGAF00008204212 fastq.gz 3.6 GB Report
EGAF00008204213 fastq.gz 8.5 GB Report
EGAF00008204214 fastq.gz 8.3 GB Report
EGAF00008204215 fastq.gz 24.5 GB Report
38 Files (211.1 GB)