About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Whole Transcriptome Analysis + AbSeq + Sample Tag Multiplexing

Multiomics data for a cohort of 20 COVID-19 patients (10 patients mild, 3 patients moderate, 4 patients severe, 3 patients critical) obtained from peripheral blood mononuclear cells (PBMCs) from longitudinally sampled at hospital admission, discharge, and 1 month thereafter. The data has been obtained a multiwell-based single-cell technology (BD Rhapsody) that includes the analysis of PBMCs' whole transcriptome and a set of 52 surface proteins. The samples of the different patients at different collection times were labelled using a cell hashing strategy with the BD Single-Cell Multiplexing Kit (6 samples for each run).

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DAA for RAGE papers

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom UNIPD grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: UNIPD and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify UNIPD within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify UNIPD prior to any significant changes to the protocol for the Project. 14. The User Institution will notify UNIPD as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. UNIPD may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than UNIPD. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007529 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008236732 fastq.gz 21.0 GB Report
EGAF00008236733 fastq.gz 29.6 GB Report
EGAF00008236734 fastq.gz 20.9 GB Report
EGAF00008236735 fastq.gz 29.3 GB Report
EGAF00008236736 fastq.gz 21.2 GB Report
EGAF00008236737 fastq.gz 29.9 GB Report
EGAF00008236738 fastq.gz 21.0 GB Report
EGAF00008236739 fastq.gz 29.6 GB Report
EGAF00008236740 fastq.gz 201.8 MB Report
EGAF00008236741 fastq.gz 201.1 MB Report
EGAF00008236742 fastq.gz 202.8 MB Report
EGAF00008236743 fastq.gz 201.0 MB Report
EGAF00008236744 fastq.gz 220.1 MB Report
EGAF00008236745 fastq.gz 213.2 MB Report
EGAF00008236746 fastq.gz 221.3 MB Report
EGAF00008236747 fastq.gz 213.1 MB Report
EGAF00008236748 fastq.gz 279.4 MB Report
EGAF00008236749 fastq.gz 253.1 MB Report
EGAF00008236750 fastq.gz 280.0 MB Report
EGAF00008236751 fastq.gz 251.3 MB Report
EGAF00008236752 fastq.gz 246.1 MB Report
EGAF00008236753 fastq.gz 224.0 MB Report
EGAF00008236754 fastq.gz 246.7 MB Report
EGAF00008236755 fastq.gz 222.8 MB Report
EGAF00008236756 fastq.gz 262.8 MB Report
EGAF00008236757 fastq.gz 257.6 MB Report
EGAF00008236758 fastq.gz 263.7 MB Report
EGAF00008236759 fastq.gz 256.4 MB Report
EGAF00008236760 fastq.gz 184.1 MB Report
EGAF00008236761 fastq.gz 157.8 MB Report
EGAF00008236762 fastq.gz 184.7 MB Report
EGAF00008236763 fastq.gz 157.1 MB Report
EGAF00008236764 fastq.gz 217.4 MB Report
EGAF00008236765 fastq.gz 199.8 MB Report
EGAF00008236766 fastq.gz 217.8 MB Report
EGAF00008236767 fastq.gz 198.7 MB Report
EGAF00008236768 fastq.gz 235.9 MB Report
EGAF00008236769 fastq.gz 228.0 MB Report
EGAF00008236770 fastq.gz 236.5 MB Report
EGAF00008236771 fastq.gz 227.3 MB Report
EGAF00008236772 fastq.gz 33.7 GB Report
EGAF00008236773 fastq.gz 48.2 GB Report
EGAF00008236774 fastq.gz 34.1 GB Report
EGAF00008236775 fastq.gz 49.0 GB Report
EGAF00008236776 fastq.gz 32.8 GB Report
EGAF00008236777 fastq.gz 47.3 GB Report
EGAF00008236778 fastq.gz 33.2 GB Report
EGAF00008236779 fastq.gz 47.9 GB Report
EGAF00008236780 fastq.gz 230.4 MB Report
EGAF00008236781 fastq.gz 177.9 MB Report
EGAF00008236782 fastq.gz 233.7 MB Report
EGAF00008236783 fastq.gz 181.2 MB Report
EGAF00008236784 fastq.gz 294.4 MB Report
EGAF00008236785 fastq.gz 244.7 MB Report
EGAF00008236786 fastq.gz 301.0 MB Report
EGAF00008236787 fastq.gz 251.3 MB Report
EGAF00008236788 fastq.gz 288.9 MB Report
EGAF00008236789 fastq.gz 269.1 MB Report
EGAF00008236790 fastq.gz 294.8 MB Report
EGAF00008236791 fastq.gz 275.9 MB Report
EGAF00008236792 fastq.gz 295.9 MB Report
EGAF00008236793 fastq.gz 289.3 MB Report
EGAF00008236794 fastq.gz 300.1 MB Report
EGAF00008236795 fastq.gz 294.7 MB Report
EGAF00008236796 fastq.gz 36.7 GB Report
EGAF00008236797 fastq.gz 53.4 GB Report
EGAF00008236798 fastq.gz 37.0 GB Report
EGAF00008236799 fastq.gz 53.9 GB Report
EGAF00008236800 fastq.gz 29.2 GB Report
EGAF00008236801 fastq.gz 41.3 GB Report
EGAF00008236802 fastq.gz 29.3 GB Report
EGAF00008236803 fastq.gz 41.6 GB Report
EGAF00008236804 fastq.gz 379.7 MB Report
EGAF00008236805 fastq.gz 313.6 MB Report
EGAF00008236806 fastq.gz 386.6 MB Report
EGAF00008236807 fastq.gz 322.0 MB Report
EGAF00008236808 fastq.gz 27.4 GB Report
EGAF00008236809 fastq.gz 39.4 GB Report
EGAF00008236810 fastq.gz 27.6 GB Report
EGAF00008236811 fastq.gz 39.8 GB Report
EGAF00008236812 fastq.gz 26.9 GB Report
EGAF00008236813 fastq.gz 39.0 GB Report
EGAF00008236814 fastq.gz 27.0 GB Report
EGAF00008236815 fastq.gz 39.3 GB Report
EGAF00008236816 fastq.gz 10.2 GB Report
EGAF00008236817 fastq.gz 13.7 GB Report
EGAF00008236818 fastq.gz 10.5 GB Report
EGAF00008236819 fastq.gz 14.1 GB Report
EGAF00008236844 fastq.gz 25.3 GB Report
EGAF00008236845 fastq.gz 37.8 GB Report
EGAF00008236846 fastq.gz 24.9 GB Report
EGAF00008236847 fastq.gz 37.2 GB Report
EGAF00008236848 fastq.gz 12.8 GB Report
EGAF00008236849 fastq.gz 17.7 GB Report
EGAF00008236850 fastq.gz 12.9 GB Report
EGAF00008236851 fastq.gz 18.0 GB Report
EGAF00008236852 fastq.gz 12.3 GB Report
EGAF00008236853 fastq.gz 16.9 GB Report
EGAF00008236854 fastq.gz 12.7 GB Report
EGAF00008236855 fastq.gz 17.5 GB Report
EGAF00008236856 fastq.gz 13.5 GB Report
EGAF00008236857 fastq.gz 18.8 GB Report
EGAF00008236858 fastq.gz 13.9 GB Report
EGAF00008236859 fastq.gz 19.3 GB Report
EGAF00008236868 fastq.gz 24.8 GB Report
EGAF00008236869 fastq.gz 37.0 GB Report
EGAF00008236870 fastq.gz 24.3 GB Report
EGAF00008236871 fastq.gz 36.3 GB Report
EGAF00008236872 fastq.gz 11.3 GB Report
EGAF00008236873 fastq.gz 15.8 GB Report
EGAF00008236874 fastq.gz 11.6 GB Report
EGAF00008236875 fastq.gz 16.2 GB Report
EGAF00008236876 fastq.gz 13.1 GB Report
EGAF00008236877 fastq.gz 18.3 GB Report
EGAF00008236878 fastq.gz 13.4 GB Report
EGAF00008236879 fastq.gz 18.7 GB Report
EGAF00008236880 fastq.gz 15.5 GB Report
EGAF00008236881 fastq.gz 21.1 GB Report
EGAF00008236882 fastq.gz 15.9 GB Report
EGAF00008236883 fastq.gz 21.6 GB Report
EGAF00008236888 fastq.gz 22.1 GB Report
EGAF00008236889 fastq.gz 31.8 GB Report
EGAF00008236890 fastq.gz 22.4 GB Report
EGAF00008236891 fastq.gz 32.3 GB Report
EGAF00008236892 fastq.gz 13.2 GB Report
EGAF00008236893 fastq.gz 18.3 GB Report
EGAF00008236894 fastq.gz 13.3 GB Report
EGAF00008236895 fastq.gz 18.6 GB Report
EGAF00008236896 fastq.gz 12.1 GB Report
EGAF00008236897 fastq.gz 16.5 GB Report
EGAF00008236898 fastq.gz 12.1 GB Report
EGAF00008236899 fastq.gz 16.7 GB Report
EGAF00008236900 fastq.gz 14.8 GB Report
EGAF00008236901 fastq.gz 20.7 GB Report
EGAF00008236902 fastq.gz 14.9 GB Report
EGAF00008236903 fastq.gz 20.9 GB Report
EGAF00008236908 fastq.gz 3.5 GB Report
EGAF00008236909 fastq.gz 4.5 GB Report
EGAF00008236910 fastq.gz 3.6 GB Report
EGAF00008236911 fastq.gz 4.5 GB Report
EGAF00008236912 fastq.gz 4.3 GB Report
EGAF00008236913 fastq.gz 5.4 GB Report
EGAF00008236914 fastq.gz 4.3 GB Report
EGAF00008236915 fastq.gz 5.4 GB Report
EGAF00008236916 fastq.gz 13.2 GB Report
EGAF00008236917 fastq.gz 18.6 GB Report
EGAF00008236918 fastq.gz 13.3 GB Report
EGAF00008236919 fastq.gz 18.7 GB Report
EGAF00008236920 fastq.gz 12.5 GB Report
EGAF00008236921 fastq.gz 17.2 GB Report
EGAF00008236922 fastq.gz 12.5 GB Report
EGAF00008236923 fastq.gz 17.3 GB Report
EGAF00008236924 fastq.gz 15.1 GB Report
EGAF00008236925 fastq.gz 20.6 GB Report
EGAF00008236926 fastq.gz 15.1 GB Report
EGAF00008236927 fastq.gz 20.6 GB Report
EGAF00008237000 fastq.gz 12.1 GB Report
EGAF00008237001 fastq.gz 42.5 GB Report
EGAF00008237102 fastq.gz 474.5 MB Report
EGAF00008237103 fastq.gz 702.6 MB Report
EGAF00008237104 fastq.gz 495.3 MB Report
EGAF00008237105 fastq.gz 728.5 MB Report
EGAF00008237110 fastq.gz 4.7 GB Report
EGAF00008237111 fastq.gz 6.5 GB Report
EGAF00008237112 fastq.gz 4.8 GB Report
EGAF00008237113 fastq.gz 6.6 GB Report
166 Files (2.4 TB)