About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Immune Response Targeted Panel + B/TCR Profiling + AbSeq + Sample Tag Multiplexing

Multiomics data for a cohort of 20 COVID-19 patients (10 patients mild, 3 patients moderate, 4 patients severe, 3 patients critical) obtained from peripheral blood mononuclear cells (PBMCs) from longitudinally sampled at hospital admission, discharge, and 1 month thereafter. The data has been obtained a multiwell-based single-cell technology (BD Rhapsody) that includes the targeted expression of BD Immune Response Targeted Panel, the TCR/BCR profiling and a set of 52 surface proteins. The samples of the different patients at different collection times were labelled using a cell hashing strategy with the BD Single-Cell Multiplexing Kit (6 samples for each run).

Request Access

DAA for RAGE papers

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom UNIPD grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: UNIPD and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify UNIPD within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify UNIPD prior to any significant changes to the protocol for the Project. 14. The User Institution will notify UNIPD as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. UNIPD may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than UNIPD. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007529 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008236820 fastq.gz 265.6 MB Report
EGAF00008236821 fastq.gz 223.2 MB Report
EGAF00008236822 fastq.gz 271.9 MB Report
EGAF00008236823 fastq.gz 230.2 MB Report
EGAF00008236824 fastq.gz 293.8 MB Report
EGAF00008236825 fastq.gz 221.6 MB Report
EGAF00008236826 fastq.gz 299.0 MB Report
EGAF00008236827 fastq.gz 227.2 MB Report
EGAF00008236828 fastq.gz 247.1 MB Report
EGAF00008236829 fastq.gz 183.5 MB Report
EGAF00008236830 fastq.gz 252.2 MB Report
EGAF00008236831 fastq.gz 188.6 MB Report
EGAF00008236832 fastq.gz 244.7 MB Report
EGAF00008236833 fastq.gz 181.7 MB Report
EGAF00008236834 fastq.gz 251.2 MB Report
EGAF00008236835 fastq.gz 187.9 MB Report
EGAF00008236836 fastq.gz 224.3 MB Report
EGAF00008236837 fastq.gz 170.5 MB Report
EGAF00008236838 fastq.gz 228.8 MB Report
EGAF00008236839 fastq.gz 175.1 MB Report
EGAF00008236840 fastq.gz 203.9 MB Report
EGAF00008236841 fastq.gz 158.4 MB Report
EGAF00008236842 fastq.gz 209.0 MB Report
EGAF00008236843 fastq.gz 163.6 MB Report
EGAF00008236860 fastq.gz 183.3 MB Report
EGAF00008236861 fastq.gz 140.9 MB Report
EGAF00008236862 fastq.gz 183.3 MB Report
EGAF00008236863 fastq.gz 143.2 MB Report
EGAF00008236864 fastq.gz 206.5 MB Report
EGAF00008236865 fastq.gz 166.6 MB Report
EGAF00008236866 fastq.gz 206.4 MB Report
EGAF00008236867 fastq.gz 168.8 MB Report
EGAF00008236884 fastq.gz 349.0 MB Report
EGAF00008236885 fastq.gz 320.7 MB Report
EGAF00008236886 fastq.gz 357.6 MB Report
EGAF00008236887 fastq.gz 331.4 MB Report
EGAF00008236904 fastq.gz 259.2 MB Report
EGAF00008236905 fastq.gz 239.1 MB Report
EGAF00008236906 fastq.gz 260.3 MB Report
EGAF00008236907 fastq.gz 242.8 MB Report
EGAF00008236928 fastq.gz 293.9 MB Report
EGAF00008236929 fastq.gz 255.6 MB Report
EGAF00008236930 fastq.gz 293.4 MB Report
EGAF00008236931 fastq.gz 256.7 MB Report
EGAF00008236932 fastq.gz 21.6 kB Report
EGAF00008236933 fastq.gz 40.7 kB Report
EGAF00008236934 fastq.gz 19.0 kB Report
EGAF00008236935 fastq.gz 36.2 kB Report
EGAF00008236936 fastq.gz 20.7 kB Report
EGAF00008236937 fastq.gz 38.5 kB Report
EGAF00008236938 fastq.gz 18.4 kB Report
EGAF00008236939 fastq.gz 34.7 kB Report
EGAF00008236940 fastq.gz 20.1 kB Report
EGAF00008236941 fastq.gz 37.8 kB Report
EGAF00008236942 fastq.gz 19.0 kB Report
EGAF00008236943 fastq.gz 35.7 kB Report
EGAF00008236944 fastq.gz 62.1 kB Report
EGAF00008236945 fastq.gz 131.0 kB Report
EGAF00008236946 fastq.gz 42.8 kB Report
EGAF00008236947 fastq.gz 89.0 kB Report
EGAF00008236948 fastq.gz 29.0 kB Report
EGAF00008236949 fastq.gz 56.3 kB Report
EGAF00008236950 fastq.gz 21.6 kB Report
EGAF00008236951 fastq.gz 41.2 kB Report
EGAF00008236952 fastq.gz 14.9 GB Report
EGAF00008236953 fastq.gz 54.6 GB Report
EGAF00008236954 fastq.gz 14.9 GB Report
EGAF00008236955 fastq.gz 54.8 GB Report
EGAF00008236956 fastq.gz 15.5 GB Report
EGAF00008236957 fastq.gz 55.9 GB Report
EGAF00008236958 fastq.gz 15.5 GB Report
EGAF00008236959 fastq.gz 56.1 GB Report
EGAF00008236960 fastq.gz 16.2 GB Report
EGAF00008236961 fastq.gz 58.9 GB Report
EGAF00008236962 fastq.gz 16.2 GB Report
EGAF00008236963 fastq.gz 59.2 GB Report
EGAF00008236964 fastq.gz 1.3 GB Report
EGAF00008236965 fastq.gz 4.3 GB Report
EGAF00008236966 fastq.gz 1.4 GB Report
EGAF00008236967 fastq.gz 4.5 GB Report
EGAF00008236968 fastq.gz 1.5 GB Report
EGAF00008236969 fastq.gz 4.7 GB Report
EGAF00008236970 fastq.gz 1.5 GB Report
EGAF00008236971 fastq.gz 4.9 GB Report
EGAF00008236972 fastq.gz 14.5 GB Report
EGAF00008236973 fastq.gz 52.7 GB Report
EGAF00008236974 fastq.gz 14.4 GB Report
EGAF00008236975 fastq.gz 52.2 GB Report
EGAF00008236976 fastq.gz 13.6 GB Report
EGAF00008236977 fastq.gz 49.7 GB Report
EGAF00008236978 fastq.gz 13.5 GB Report
EGAF00008236979 fastq.gz 49.3 GB Report
EGAF00008236980 fastq.gz 10.0 GB Report
EGAF00008236981 fastq.gz 35.0 GB Report
EGAF00008236982 fastq.gz 9.9 GB Report
EGAF00008236983 fastq.gz 34.7 GB Report
EGAF00008236984 fastq.gz 535.7 MB Report
EGAF00008236985 fastq.gz 1.7 GB Report
EGAF00008236986 fastq.gz 533.2 MB Report
EGAF00008236987 fastq.gz 1.6 GB Report
EGAF00008236988 fastq.gz 7.8 GB Report
EGAF00008236989 fastq.gz 27.1 GB Report
EGAF00008236990 fastq.gz 7.7 GB Report
EGAF00008236991 fastq.gz 26.8 GB Report
EGAF00008236992 fastq.gz 5.4 GB Report
EGAF00008236993 fastq.gz 14.7 GB Report
EGAF00008236994 fastq.gz 5.3 GB Report
EGAF00008236995 fastq.gz 14.4 GB Report
EGAF00008236996 fastq.gz 13.0 GB Report
EGAF00008236997 fastq.gz 46.4 GB Report
EGAF00008236998 fastq.gz 13.0 GB Report
EGAF00008236999 fastq.gz 46.6 GB Report
EGAF00008237002 fastq.gz 12.1 GB Report
EGAF00008237003 fastq.gz 42.8 GB Report
EGAF00008237004 fastq.gz 6.3 GB Report
EGAF00008237005 fastq.gz 20.3 GB Report
EGAF00008237006 fastq.gz 6.4 GB Report
EGAF00008237007 fastq.gz 20.8 GB Report
EGAF00008237008 fastq.gz 6.2 GB Report
EGAF00008237009 fastq.gz 20.6 GB Report
EGAF00008237010 fastq.gz 6.3 GB Report
EGAF00008237011 fastq.gz 21.1 GB Report
EGAF00008237012 fastq.gz 6.5 GB Report
EGAF00008237013 fastq.gz 22.0 GB Report
EGAF00008237014 fastq.gz 6.5 GB Report
EGAF00008237015 fastq.gz 22.5 GB Report
EGAF00008237016 fastq.gz 1.3 GB Report
EGAF00008237017 fastq.gz 3.9 GB Report
EGAF00008237018 fastq.gz 1.3 GB Report
EGAF00008237019 fastq.gz 4.1 GB Report
EGAF00008237020 fastq.gz 1.8 GB Report
EGAF00008237021 fastq.gz 5.6 GB Report
EGAF00008237022 fastq.gz 1.9 GB Report
EGAF00008237023 fastq.gz 5.8 GB Report
EGAF00008237024 fastq.gz 1.6 GB Report
EGAF00008237025 fastq.gz 4.6 GB Report
EGAF00008237026 fastq.gz 1.6 GB Report
EGAF00008237027 fastq.gz 4.8 GB Report
EGAF00008237028 fastq.gz 1.7 GB Report
EGAF00008237029 fastq.gz 5.3 GB Report
EGAF00008237030 fastq.gz 4.7 GB Report
EGAF00008237031 fastq.gz 12.6 GB Report
EGAF00008237032 fastq.gz 8.0 GB Report
EGAF00008237033 fastq.gz 21.2 GB Report
EGAF00008237034 fastq.gz 3.1 GB Report
EGAF00008237035 fastq.gz 9.8 GB Report
EGAF00008237036 fastq.gz 3.0 GB Report
EGAF00008237037 fastq.gz 9.6 GB Report
EGAF00008237038 fastq.gz 3.9 GB Report
EGAF00008237039 fastq.gz 12.2 GB Report
EGAF00008237040 fastq.gz 2.4 GB Report
EGAF00008237041 fastq.gz 7.3 GB Report
EGAF00008237042 fastq.gz 33.8 GB Report
EGAF00008237043 fastq.gz 119.4 GB Report
EGAF00008237044 fastq.gz 7.2 GB Report
EGAF00008237045 fastq.gz 19.2 GB Report
EGAF00008237046 fastq.gz 4.3 GB Report
EGAF00008237047 fastq.gz 11.3 GB Report
EGAF00008237048 fastq.gz 2.8 GB Report
EGAF00008237049 fastq.gz 9.2 GB Report
EGAF00008237050 fastq.gz 2.1 GB Report
EGAF00008237051 fastq.gz 6.6 GB Report
EGAF00008237052 fastq.gz 1.7 GB Report
EGAF00008237053 fastq.gz 5.5 GB Report
EGAF00008237054 fastq.gz 3.3 GB Report
EGAF00008237055 fastq.gz 9.1 GB Report
EGAF00008237056 fastq.gz 24.1 GB Report
EGAF00008237057 fastq.gz 82.7 GB Report
EGAF00008237058 fastq.gz 8.4 GB Report
EGAF00008237059 fastq.gz 27.2 GB Report
EGAF00008237060 fastq.gz 8.3 GB Report
EGAF00008237061 fastq.gz 26.0 GB Report
EGAF00008237062 fastq.gz 6.1 GB Report
EGAF00008237063 fastq.gz 18.5 GB Report
EGAF00008237064 fastq.gz 2.9 GB Report
EGAF00008237065 fastq.gz 8.8 GB Report
EGAF00008237066 fastq.gz 26.2 GB Report
EGAF00008237067 fastq.gz 91.0 GB Report
EGAF00008237068 fastq.gz 12.3 GB Report
EGAF00008237069 fastq.gz 40.9 GB Report
EGAF00008237070 fastq.gz 6.8 GB Report
EGAF00008237071 fastq.gz 21.6 GB Report
EGAF00008237072 fastq.gz 4.5 GB Report
EGAF00008237073 fastq.gz 13.6 GB Report
EGAF00008237074 fastq.gz 5.1 GB Report
EGAF00008237075 fastq.gz 16.0 GB Report
EGAF00008237076 fastq.gz 17.7 GB Report
EGAF00008237077 fastq.gz 63.2 GB Report
EGAF00008237078 fastq.gz 8.7 GB Report
EGAF00008237079 fastq.gz 27.6 GB Report
EGAF00008237080 fastq.gz 11.9 GB Report
EGAF00008237081 fastq.gz 35.2 GB Report
EGAF00008237082 fastq.gz 5.6 GB Report
EGAF00008237083 fastq.gz 16.9 GB Report
EGAF00008237084 fastq.gz 5.3 GB Report
EGAF00008237085 fastq.gz 16.0 GB Report
EGAF00008237086 fastq.gz 6.2 GB Report
EGAF00008237087 fastq.gz 19.0 GB Report
EGAF00008237088 fastq.gz 27.3 GB Report
EGAF00008237089 fastq.gz 99.1 GB Report
EGAF00008237090 fastq.gz 9.1 GB Report
EGAF00008237091 fastq.gz 22.4 GB Report
EGAF00008237092 fastq.gz 12.1 GB Report
EGAF00008237093 fastq.gz 40.2 GB Report
EGAF00008237094 fastq.gz 4.9 GB Report
EGAF00008237095 fastq.gz 15.2 GB Report
EGAF00008237096 fastq.gz 3.1 GB Report
EGAF00008237097 fastq.gz 9.6 GB Report
EGAF00008237098 fastq.gz 2.1 GB Report
EGAF00008237099 fastq.gz 1.9 GB Report
EGAF00008237100 fastq.gz 2.2 GB Report
EGAF00008237101 fastq.gz 2.0 GB Report
EGAF00008237106 fastq.gz 6.4 GB Report
EGAF00008237107 fastq.gz 9.1 GB Report
EGAF00008237108 fastq.gz 6.5 GB Report
EGAF00008237109 fastq.gz 9.2 GB Report
216 Files (2.6 TB)