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Single-cell RNA-seq of peripheral blood mononuclear cells in classic Hodgkin lymphoma

Abstract: Classic Hodgkin lymphoma (cHL) is a largely MHC class I-negative tumor with recurrent 9p24.1/ PD-L1/ PD-L2 copy gains and the highest reported response rates to PD-1 blockade. We utilized scRNA sequencing to characterize the peripheral immune response to PD-1 blockade and more broadly define non-CD8+ dependent mechanisms of immune evasion in cHL. Peripheral blood mononuclear cells were obtained from 20 patients with relapsed/refractory (R/R) cHL treated with PD-1 blockade (nivolumab) on the CheckMate 205 clinical trial (paired samples from cycle 1 day 1 [C1D1] and cycle 4 day 1 [C4D1]), 11 patients with newly diagnosed, previously untreated cHL and 13 healthy donors.

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The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. 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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007569 Other
  • updated patient information in metadata
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008246986 bam 18.6 GB
EGAF00008246987 bam 19.2 GB
EGAF00008246988 bam 19.3 GB
EGAF00008246989 bam 27.9 GB
EGAF00008246990 bam 18.5 GB
EGAF00008246991 bam 21.2 GB
EGAF00008246992 bam 34.2 GB
EGAF00008246993 bam 20.2 GB
EGAF00008246994 bam 19.8 GB
EGAF00008246995 bam 27.5 GB
EGAF00008246996 bam 19.2 GB
EGAF00008246997 bam 20.3 GB
EGAF00008246998 bam 21.0 GB
EGAF00008246999 bam 20.1 GB
EGAF00008247000 bam 21.1 GB
EGAF00008247001 bam 21.5 GB
EGAF00008247002 bam 16.9 GB
EGAF00008247003 bam 26.3 GB
EGAF00008247004 bam 29.4 GB
EGAF00008247005 bam 19.6 GB
EGAF00008247006 bam 19.3 GB
EGAF00008247007 bam 23.1 GB
EGAF00008247008 bam 23.0 GB
EGAF00008247009 bam 19.8 GB
EGAF00008247010 bam 18.0 GB
EGAF00008247011 bam 16.1 GB
EGAF00008247012 bam 23.1 GB
EGAF00008247013 bam 18.9 GB
EGAF00008247014 bam 20.0 GB
EGAF00008247015 bam 19.6 GB
EGAF00008247016 bam 18.6 GB
EGAF00008247017 bam 18.5 GB
EGAF00008247018 bam 23.1 GB
EGAF00008247019 bam 21.2 GB
EGAF00008247020 bam 22.3 GB
EGAF00008247021 bam 19.8 GB
EGAF00008247022 bam 20.4 GB
EGAF00008247023 bam 21.1 GB
EGAF00008247024 bam 18.9 GB
EGAF00008247025 bam 20.6 GB
EGAF00008247026 bam 19.5 GB
EGAF00008247027 bam 20.2 GB
EGAF00008247028 bam 19.4 GB
EGAF00008247029 bam 17.9 GB
EGAF00008247030 bam 31.0 GB
EGAF00008247031 bam 20.3 GB
EGAF00008247032 bam 20.8 GB
EGAF00008247033 bam 18.6 GB
EGAF00008247034 bam 20.7 GB
EGAF00008247035 bam 20.3 GB
EGAF00008247036 bam 19.3 GB
EGAF00008247037 bam 16.0 GB
EGAF00008247038 bam 20.1 GB
EGAF00008247039 bam 25.5 GB
EGAF00008247040 bam 18.7 GB
EGAF00008247041 bam 18.9 GB
EGAF00008247042 bam 21.0 GB
EGAF00008247043 bam 16.7 GB
EGAF00008247044 bam 19.8 GB
EGAF00008247045 bam 16.8 GB
EGAF00008247046 bam 20.5 GB
EGAF00008247047 bam 18.6 GB
EGAF00008247048 bam 15.9 GB
EGAF00008247049 bam 17.1 GB
EGAF00008247050 bam 16.5 GB
EGAF00008247051 bam 13.3 GB
EGAF00008247052 bam 16.0 GB
EGAF00008247053 bam 16.9 GB
EGAF00008247054 bam 18.4 GB
EGAF00008247055 bam 16.5 GB
EGAF00008247056 bam 20.3 GB
EGAF00008247057 bam 19.8 GB
EGAF00008247058 bam 22.4 GB
EGAF00008247059 bam 18.9 GB
EGAF00008247060 bam 18.4 GB
EGAF00008247061 bam 19.9 GB
EGAF00008247062 bam 14.9 GB
EGAF00008247063 bam 23.1 GB
EGAF00008247064 bam 23.3 GB
EGAF00008247065 bam 21.4 GB
EGAF00008247066 bam 14.4 GB
EGAF00008247067 bam 12.0 GB
EGAF00008247068 bam 14.3 GB
EGAF00008247069 bam 12.6 GB
EGAF00008247070 bam 17.1 GB
EGAF00008247071 bam 17.3 GB
EGAF00008247072 bam 11.7 GB
EGAF00008247073 bam 14.9 GB
EGAF00008247074 bam 14.1 GB
EGAF00008247075 bam 16.5 GB
EGAF00008247076 bam 13.1 GB
EGAF00008247077 bam 12.3 GB
EGAF00008247078 bam 24.5 GB
EGAF00008247079 bam 16.5 GB
EGAF00008247080 bam 14.2 GB
EGAF00008247081 bam 16.0 GB
EGAF00008247082 bam 12.7 GB
EGAF00008247083 bam 15.1 GB
EGAF00008247084 bam 17.5 GB
EGAF00008247085 bam 28.1 GB
EGAF00008247086 bam 20.5 GB
EGAF00008247087 bam 20.7 GB
EGAF00008247088 bam 17.8 GB
EGAF00008247089 bam 13.1 GB
EGAF00008247090 bam 16.4 GB
EGAF00008247091 bam 17.2 GB
EGAF00008247092 bam 16.3 GB
EGAF00008247093 bam 18.5 GB
EGAF00008247094 bam 16.5 GB
EGAF00008247095 bam 18.4 GB
EGAF00008247096 bam 21.0 GB
EGAF00008247097 bam 3.7 GB
EGAF00008247098 bam 15.7 GB
EGAF00008247099 bam 15.1 GB
EGAF00008247100 bam 15.8 GB
EGAF00008247101 bam 15.2 GB
EGAF00008247102 bam 20.3 GB
EGAF00008247103 bam 19.3 GB
EGAF00008247104 bam 16.0 GB
EGAF00008247105 bam 18.0 GB
EGAF00008247106 bam 16.7 GB
EGAF00008247107 bam 18.8 GB
EGAF00008247108 bam 15.9 GB
EGAF00008247109 bam 17.7 GB
EGAF00008247110 bam 12.6 GB
EGAF00008247111 bam 16.3 GB
EGAF00008247112 bam 18.0 GB
EGAF00008247113 bam 15.7 GB
EGAF00008247114 tar.gz 2.6 GB
129 Files (2.4 TB)