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CCA RNA-seq data (60 CCA, 6 normal, 16 cell-line)

Fastq files for RNA-seq for 60 CCAs, 6 normal bile duct tissues, 14 CCA cell-lines (including replicates), and 2 normal cholangiocyte cell-lines (including replicates). RNA was extracted using the Qiagen RNeasy Mini kit. Illumina Tru-Seq Stranded Total RNA kit (Illumina, San Diego, California, USA) was used to prepare RNA libraries from 1 µg of total RNA. Paired-end 150 bp sequencing was performed using Illumina HiSeq4000 sequencer with the paired-end 150 bp read option.

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Enhancer studies on CCA

DUO:0000006 health/medical/biomedical research and clinical care This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry. DUO:0000020 collaboration required This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s). DUO:0000021 ethics approval required This requirement indicates that the requestor must provide documentation of local IRB/ERB approval. DUO:0000018 not-for-profit use only This requirement indicates that use is limited to not-for-profit organizations. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited. DUO:0000045 not for profit organisation use only This data use modifier indicates that use of the data is limited to not-for-profit organizations. DUO:0000046 non-commercial use only This data use modifier indicates that use of the data is limited to not-for-profit use. DUO:0000027 project-specific restriction This requirement indicates that use is limited to use within an approved project. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007309 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008264366 fastq.gz 2.9 GB
EGAF00008264367 fastq.gz 3.1 GB
EGAF00008264368 fastq.gz 3.2 GB
EGAF00008264369 fastq.gz 3.5 GB
EGAF00008264370 fastq.gz 2.3 GB
EGAF00008264371 fastq.gz 2.4 GB
EGAF00008264372 fastq.gz 3.5 GB
EGAF00008264373 fastq.gz 3.8 GB
EGAF00008264374 fastq.gz 3.4 GB
EGAF00008264375 fastq.gz 3.6 GB
EGAF00008264376 fastq.gz 3.4 GB
EGAF00008264377 fastq.gz 3.5 GB
EGAF00008264378 fastq.gz 3.1 GB
EGAF00008264379 fastq.gz 3.4 GB
EGAF00008264380 fastq.gz 2.9 GB
EGAF00008264381 fastq.gz 3.2 GB
EGAF00008264382 fastq.gz 2.4 GB
EGAF00008264383 fastq.gz 2.7 GB
EGAF00008264384 fastq.gz 2.9 GB
EGAF00008264385 fastq.gz 3.1 GB
EGAF00008264386 fastq.gz 3.2 GB
EGAF00008264387 fastq.gz 3.4 GB
EGAF00008264388 fastq.gz 3.2 GB
EGAF00008264389 fastq.gz 3.3 GB
EGAF00008264390 fastq.gz 4.1 GB
EGAF00008264391 fastq.gz 4.4 GB
EGAF00008264392 fastq.gz 3.1 GB
EGAF00008264393 fastq.gz 3.4 GB
EGAF00008264394 fastq.gz 3.1 GB
EGAF00008264395 fastq.gz 3.4 GB
EGAF00008264396 fastq.gz 2.9 GB
EGAF00008264397 fastq.gz 2.9 GB
EGAF00008264398 fastq.gz 3.6 GB
EGAF00008264399 fastq.gz 3.9 GB
EGAF00008264400 fastq.gz 2.9 GB
EGAF00008264401 fastq.gz 3.1 GB
EGAF00008264402 fastq.gz 3.0 GB
EGAF00008264403 fastq.gz 3.2 GB
EGAF00008264404 fastq.gz 2.9 GB
EGAF00008264405 fastq.gz 3.1 GB
EGAF00008264406 fastq.gz 2.3 GB
EGAF00008264407 fastq.gz 2.5 GB
EGAF00008264408 fastq.gz 2.9 GB
EGAF00008264409 fastq.gz 3.2 GB
EGAF00008264410 fastq.gz 3.8 GB
EGAF00008264411 fastq.gz 3.9 GB
EGAF00008264412 fastq.gz 3.6 GB
EGAF00008264413 fastq.gz 3.7 GB
EGAF00008264414 fastq.gz 3.0 GB
EGAF00008264415 fastq.gz 3.2 GB
EGAF00008264416 fastq.gz 3.7 GB
EGAF00008264417 fastq.gz 3.8 GB
EGAF00008264418 fastq.gz 3.3 GB
EGAF00008264419 fastq.gz 3.4 GB
EGAF00008264420 fastq.gz 3.2 GB
EGAF00008264421 fastq.gz 3.4 GB
EGAF00008264422 fastq.gz 3.4 GB
EGAF00008264423 fastq.gz 3.7 GB
EGAF00008264424 fastq.gz 2.9 GB
EGAF00008264425 fastq.gz 3.2 GB
EGAF00008264426 fastq.gz 2.8 GB
EGAF00008264427 fastq.gz 3.0 GB
EGAF00008264428 fastq.gz 2.9 GB
EGAF00008264429 fastq.gz 3.0 GB
EGAF00008264430 fastq.gz 3.1 GB
EGAF00008264431 fastq.gz 3.3 GB
EGAF00008264432 fastq.gz 3.6 GB
EGAF00008264433 fastq.gz 3.9 GB
EGAF00008264434 fastq.gz 3.0 GB
EGAF00008264435 fastq.gz 3.2 GB
EGAF00008264436 fastq.gz 2.8 GB
EGAF00008264437 fastq.gz 3.0 GB
EGAF00008264438 fastq.gz 2.9 GB
EGAF00008264439 fastq.gz 3.2 GB
EGAF00008264440 fastq.gz 3.3 GB
EGAF00008264441 fastq.gz 3.6 GB
EGAF00008264442 fastq.gz 3.1 GB
EGAF00008264443 fastq.gz 3.4 GB
EGAF00008264444 fastq.gz 3.2 GB
EGAF00008264445 fastq.gz 3.4 GB
EGAF00008264446 fastq.gz 2.9 GB
EGAF00008264447 fastq.gz 3.0 GB
EGAF00008264448 fastq.gz 3.1 GB
EGAF00008264449 fastq.gz 3.1 GB
EGAF00008264450 fastq.gz 2.9 GB
EGAF00008264451 fastq.gz 3.2 GB
EGAF00008264452 fastq.gz 2.7 GB
EGAF00008264453 fastq.gz 3.0 GB
EGAF00008264454 fastq.gz 2.9 GB
EGAF00008264455 fastq.gz 3.1 GB
EGAF00008264456 fastq.gz 2.8 GB
EGAF00008264457 fastq.gz 3.1 GB
EGAF00008264458 fastq.gz 2.8 GB
EGAF00008264459 fastq.gz 3.1 GB
EGAF00008264460 fastq.gz 2.7 GB
EGAF00008264461 fastq.gz 3.0 GB
EGAF00008264462 fastq.gz 3.0 GB
EGAF00008264463 fastq.gz 3.3 GB
EGAF00008264464 fastq.gz 2.9 GB
EGAF00008264465 fastq.gz 3.2 GB
EGAF00008264466 fastq.gz 2.7 GB
EGAF00008264467 fastq.gz 3.0 GB
EGAF00008264468 fastq.gz 3.5 GB
EGAF00008264469 fastq.gz 3.6 GB
EGAF00008264470 fastq.gz 3.0 GB
EGAF00008264471 fastq.gz 3.3 GB
EGAF00008264472 fastq.gz 2.9 GB
EGAF00008264473 fastq.gz 3.1 GB
EGAF00008264474 fastq.gz 2.8 GB
EGAF00008264475 fastq.gz 3.0 GB
EGAF00008264476 fastq.gz 3.3 GB
EGAF00008264477 fastq.gz 3.5 GB
EGAF00008264478 fastq.gz 3.6 GB
EGAF00008264479 fastq.gz 3.7 GB
EGAF00008264480 fastq.gz 3.4 GB
EGAF00008264481 fastq.gz 3.5 GB
EGAF00008264482 fastq.gz 2.8 GB
EGAF00008264483 fastq.gz 2.9 GB
EGAF00008264484 fastq.gz 3.4 GB
EGAF00008264485 fastq.gz 3.7 GB
EGAF00008264486 fastq.gz 2.6 GB
EGAF00008264487 fastq.gz 2.7 GB
EGAF00008264488 fastq.gz 3.6 GB
EGAF00008264489 fastq.gz 3.9 GB
EGAF00008264490 fastq.gz 2.9 GB
EGAF00008264491 fastq.gz 3.1 GB
EGAF00008264492 fastq.gz 3.0 GB
EGAF00008264493 fastq.gz 3.3 GB
EGAF00008264494 fastq.gz 2.9 GB
EGAF00008264495 fastq.gz 3.2 GB
EGAF00008264496 fastq.gz 3.0 GB
EGAF00008264497 fastq.gz 3.2 GB
EGAF00008264498 fastq.gz 3.4 GB
EGAF00008264499 fastq.gz 3.5 GB
EGAF00008264500 fastq.gz 3.5 GB
EGAF00008264501 fastq.gz 3.8 GB
EGAF00008264502 fastq.gz 6.8 GB
EGAF00008264503 fastq.gz 7.6 GB
EGAF00008264504 fastq.gz 6.5 GB
EGAF00008264505 fastq.gz 7.1 GB
EGAF00008264506 fastq.gz 7.7 GB
EGAF00008264507 fastq.gz 8.6 GB
EGAF00008264508 fastq.gz 8.9 GB
EGAF00008264509 fastq.gz 9.8 GB
EGAF00008264510 fastq.gz 2.7 GB
EGAF00008264511 fastq.gz 3.0 GB
EGAF00008264512 fastq.gz 3.4 GB
EGAF00008264513 fastq.gz 3.5 GB
EGAF00008264514 fastq.gz 3.1 GB
EGAF00008264515 fastq.gz 3.2 GB
EGAF00008264516 fastq.gz 3.2 GB
EGAF00008264517 fastq.gz 3.5 GB
EGAF00008264518 fastq.gz 2.8 GB
EGAF00008264519 fastq.gz 2.9 GB
EGAF00008264520 fastq.gz 2.8 GB
EGAF00008264521 fastq.gz 2.8 GB
EGAF00008264522 fastq.gz 3.0 GB
EGAF00008264523 fastq.gz 3.0 GB
EGAF00008264524 fastq.gz 2.7 GB
EGAF00008264525 fastq.gz 2.7 GB
EGAF00008264526 fastq.gz 3.0 GB
EGAF00008264527 fastq.gz 3.0 GB
EGAF00008264528 fastq.gz 3.4 GB
EGAF00008264529 fastq.gz 3.5 GB
164 Files (559.0 GB)