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CCA WGS data (16 CCA with matched normal, 4 cell-line)

Fastq files for WGS for 16 CCAs (with matched normal tissues), and 4 cell lines in an AA-treatment experiment (0, 10, 20, 40ug AA treatment after 180 days; 2 runs each for 10ug and 40ug experiments). Genomic DNA was extracted using DNeasy Blood and Tissue Kit (Qiagen). Sequencing libraries were prepared from DNA extracted using the SureSelect XT2 Target Enrichment System for the Illumina Multiplexed Sequencing platform (Illumina) according to the manufacturer’s instructions. Whole genome sequencing was performed on Illumina HiSeq4000 sequencer with paired-end sequencing.

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Enhancer studies on CCA

DUO:0000006 health/medical/biomedical research and clinical care This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry. DUO:0000020 collaboration required This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s). DUO:0000021 ethics approval required This requirement indicates that the requestor must provide documentation of local IRB/ERB approval. DUO:0000018 not-for-profit use only This requirement indicates that use is limited to not-for-profit organizations. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited. DUO:0000045 not for profit organisation use only This data use modifier indicates that use of the data is limited to not-for-profit organizations. DUO:0000046 non-commercial use only This data use modifier indicates that use of the data is limited to not-for-profit use. DUO:0000027 project-specific restriction This requirement indicates that use is limited to use within an approved project. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007309 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008271189 fastq.gz 25.1 GB
EGAF00008271190 fastq.gz 26.0 GB
EGAF00008271191 fastq.gz 50.3 GB
EGAF00008271192 fastq.gz 52.0 GB
EGAF00008271193 fastq.gz 26.1 GB
EGAF00008271194 fastq.gz 26.4 GB
EGAF00008271195 fastq.gz 58.1 GB
EGAF00008271196 fastq.gz 59.9 GB
EGAF00008271197 fastq.gz 25.0 GB
EGAF00008271198 fastq.gz 25.5 GB
EGAF00008271199 fastq.gz 50.2 GB
EGAF00008271200 fastq.gz 51.5 GB
EGAF00008271201 fastq.gz 25.0 GB
EGAF00008271202 fastq.gz 26.0 GB
EGAF00008271203 fastq.gz 49.5 GB
EGAF00008271204 fastq.gz 51.9 GB
EGAF00008271205 fastq.gz 25.1 GB
EGAF00008271206 fastq.gz 25.8 GB
EGAF00008271207 fastq.gz 50.0 GB
EGAF00008271208 fastq.gz 51.5 GB
EGAF00008271209 fastq.gz 25.0 GB
EGAF00008271210 fastq.gz 26.1 GB
EGAF00008271211 fastq.gz 50.5 GB
EGAF00008271212 fastq.gz 52.3 GB
EGAF00008271213 fastq.gz 24.7 GB
EGAF00008271214 fastq.gz 25.5 GB
EGAF00008271215 fastq.gz 52.3 GB
EGAF00008271216 fastq.gz 54.3 GB
EGAF00008271217 fastq.gz 30.2 GB
EGAF00008271218 fastq.gz 31.6 GB
EGAF00008271219 fastq.gz 55.6 GB
EGAF00008271220 fastq.gz 57.9 GB
EGAF00008271221 fastq.gz 33.3 GB
EGAF00008271222 fastq.gz 34.8 GB
EGAF00008271223 fastq.gz 51.0 GB
EGAF00008271224 fastq.gz 52.7 GB
EGAF00008271225 fastq.gz 26.5 GB
EGAF00008271226 fastq.gz 27.0 GB
EGAF00008271227 fastq.gz 53.4 GB
EGAF00008271228 fastq.gz 54.6 GB
EGAF00008271229 fastq.gz 29.1 GB
EGAF00008271230 fastq.gz 29.7 GB
EGAF00008271231 fastq.gz 57.4 GB
EGAF00008271232 fastq.gz 58.8 GB
EGAF00008271233 fastq.gz 26.8 GB
EGAF00008271234 fastq.gz 27.4 GB
EGAF00008271235 fastq.gz 54.3 GB
EGAF00008271236 fastq.gz 55.9 GB
EGAF00008271237 fastq.gz 25.6 GB
EGAF00008271238 fastq.gz 26.0 GB
EGAF00008271239 fastq.gz 58.1 GB
EGAF00008271240 fastq.gz 59.9 GB
EGAF00008271241 fastq.gz 27.4 GB
EGAF00008271242 fastq.gz 28.3 GB
EGAF00008271243 fastq.gz 54.8 GB
EGAF00008271244 fastq.gz 56.7 GB
EGAF00008271245 fastq.gz 26.5 GB
EGAF00008271246 fastq.gz 27.6 GB
EGAF00008271247 fastq.gz 53.6 GB
EGAF00008271248 fastq.gz 55.1 GB
EGAF00008271249 fastq.gz 28.6 GB
EGAF00008271250 fastq.gz 29.2 GB
EGAF00008271251 fastq.gz 57.2 GB
EGAF00008271252 fastq.gz 58.6 GB
EGAF00008271253 fq.gz 26.7 GB
EGAF00008271254 fq.gz 29.1 GB
EGAF00008271255 fq.gz 41.7 GB
EGAF00008271256 fq.gz 44.2 GB
EGAF00008271257 fq.gz 2.9 GB
EGAF00008271258 fq.gz 3.1 GB
EGAF00008271259 fq.gz 47.7 GB
EGAF00008271260 fq.gz 50.3 GB
EGAF00008271261 fq.gz 36.4 GB
EGAF00008271262 fq.gz 39.3 GB
EGAF00008271263 fq.gz 9.8 GB
EGAF00008271264 fq.gz 10.4 GB
76 Files (3.0 TB)