About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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CCA WGS data (16 CCA with matched normal, 4 cell-line)

Fastq files for WGS for 16 CCAs (with matched normal tissues), and 4 cell lines in an AA-treatment experiment (0, 10, 20, 40ug AA treatment after 180 days; 2 runs each for 10ug and 40ug experiments). Genomic DNA was extracted using DNeasy Blood and Tissue Kit (Qiagen). Sequencing libraries were prepared from DNA extracted using the SureSelect XT2 Target Enrichment System for the Illumina Multiplexed Sequencing platform (Illumina) according to the manufacturer’s instructions. Whole genome sequencing was performed on Illumina HiSeq4000 sequencer with paired-end sequencing.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000020
version: 2021-02-23

collaboration required

This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000044
version: 2021-02-23

population origins or ancestry research prohibited

This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.

DUO:0000045
version: 2021-02-23

not for profit organisation use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations.

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

Enhancer studies on CCA

DUO:0000006 health/medical/biomedical research and clinical care This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry. DUO:0000020 collaboration required This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s). DUO:0000021 ethics approval required This requirement indicates that the requestor must provide documentation of local IRB/ERB approval. DUO:0000018 not-for-profit use only This requirement indicates that use is limited to not-for-profit organizations. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited. DUO:0000045 not for profit organisation use only This data use modifier indicates that use of the data is limited to not-for-profit organizations. DUO:0000046 non-commercial use only This data use modifier indicates that use of the data is limited to not-for-profit use. DUO:0000027 project-specific restriction This requirement indicates that use is limited to use within an approved project. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007309 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008271189 fastq.gz 25.1 GB Report
EGAF00008271190 fastq.gz 26.0 GB Report
EGAF00008271191 fastq.gz 50.3 GB Report
EGAF00008271192 fastq.gz 52.0 GB Report
EGAF00008271193 fastq.gz 26.1 GB Report
EGAF00008271194 fastq.gz 26.4 GB Report
EGAF00008271195 fastq.gz 58.1 GB Report
EGAF00008271196 fastq.gz 59.9 GB Report
EGAF00008271197 fastq.gz 25.0 GB Report
EGAF00008271198 fastq.gz 25.5 GB Report
EGAF00008271199 fastq.gz 50.2 GB Report
EGAF00008271200 fastq.gz 51.5 GB Report
EGAF00008271201 fastq.gz 25.0 GB Report
EGAF00008271202 fastq.gz 26.0 GB Report
EGAF00008271203 fastq.gz 49.5 GB Report
EGAF00008271204 fastq.gz 51.9 GB Report
EGAF00008271205 fastq.gz 25.1 GB Report
EGAF00008271206 fastq.gz 25.8 GB Report
EGAF00008271207 fastq.gz 50.0 GB Report
EGAF00008271208 fastq.gz 51.5 GB Report
EGAF00008271209 fastq.gz 25.0 GB Report
EGAF00008271210 fastq.gz 26.1 GB Report
EGAF00008271211 fastq.gz 50.5 GB Report
EGAF00008271212 fastq.gz 52.3 GB Report
EGAF00008271213 fastq.gz 24.7 GB Report
EGAF00008271214 fastq.gz 25.5 GB Report
EGAF00008271215 fastq.gz 52.3 GB Report
EGAF00008271216 fastq.gz 54.3 GB Report
EGAF00008271217 fastq.gz 30.2 GB Report
EGAF00008271218 fastq.gz 31.6 GB Report
EGAF00008271219 fastq.gz 55.6 GB Report
EGAF00008271220 fastq.gz 57.9 GB
EGAF00008271220 fastq.gz 57.8 GB Report
EGAF00008271221 fastq.gz 33.3 GB Report
EGAF00008271222 fastq.gz 34.8 GB Report
EGAF00008271223 fastq.gz 51.0 GB Report
EGAF00008271224 fastq.gz 52.7 GB Report
EGAF00008271225 fastq.gz 26.5 GB Report
EGAF00008271226 fastq.gz 27.0 GB Report
EGAF00008271227 fastq.gz 53.4 GB Report
EGAF00008271228 fastq.gz 54.6 GB Report
EGAF00008271229 fastq.gz 29.1 GB Report
EGAF00008271230 fastq.gz 29.7 GB Report
EGAF00008271231 fastq.gz 57.4 GB Report
EGAF00008271232 fastq.gz 58.8 GB Report
EGAF00008271233 fastq.gz 26.8 GB Report
EGAF00008271234 fastq.gz 27.4 GB Report
EGAF00008271235 fastq.gz 54.3 GB Report
EGAF00008271236 fastq.gz 55.9 GB Report
EGAF00008271237 fastq.gz 25.6 GB Report
EGAF00008271238 fastq.gz 26.0 GB Report
EGAF00008271239 fastq.gz 58.1 GB Report
EGAF00008271240 fastq.gz 59.9 GB Report
EGAF00008271241 fastq.gz 27.4 GB Report
EGAF00008271242 fastq.gz 28.3 GB Report
EGAF00008271243 fastq.gz 54.8 GB Report
EGAF00008271244 fastq.gz 56.7 GB Report
EGAF00008271245 fastq.gz 26.5 GB Report
EGAF00008271246 fastq.gz 27.6 GB Report
EGAF00008271247 fastq.gz 53.6 GB Report
EGAF00008271248 fastq.gz 55.1 GB Report
EGAF00008271249 fastq.gz 28.6 GB Report
EGAF00008271250 fastq.gz 29.2 GB Report
EGAF00008271251 fastq.gz 57.2 GB Report
EGAF00008271252 fastq.gz 58.6 GB Report
EGAF00008271253 fq.gz 26.7 GB Report
EGAF00008271254 fq.gz 29.1 GB Report
EGAF00008271255 fq.gz 41.7 GB Report
EGAF00008271256 fq.gz 44.2 GB Report
EGAF00008271257 fq.gz 2.9 GB Report
EGAF00008271258 fq.gz 3.1 GB Report
EGAF00008271259 fq.gz 47.7 GB Report
EGAF00008271260 fq.gz 50.3 GB Report
EGAF00008271261 fq.gz 36.4 GB Report
EGAF00008271262 fq.gz 39.3 GB Report
EGAF00008271263 fq.gz 9.8 GB Report
EGAF00008271264 fq.gz 10.4 GB
EGAF00008271264 fq.gz 10.4 GB Report
78 Files (3.0 TB)