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scRNAseq sequencing reads and count matrices of murine splenocytes from diffuse large B-cell lymphoma

Single-cell RNA-seq of 91 murine splenocytes from Bcl6tg/+ and Cd70-/-; Bcl6tg/+ diffuse large B-cell lymphoma mouse models and Cd70-/- and wild-type controls.

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Data users should carefully read and strictly follow the 18 policies listed in the Data Access Agreement Form.

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/w eb_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the 3 Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify DFCI within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify DFCI prior to any significant changes to the protocol for the Project. 14. The User Institution will notify DFCI as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. DFCI may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than DFCI. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007570 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00008271096 bam 6.3 GB
EGAF00008271097 bam 7.0 GB
EGAF00008271098 bam 6.8 GB
EGAF00008271099 bam 6.0 GB
EGAF00008271100 bam 7.1 GB
EGAF00008271101 bam 6.6 GB
EGAF00008271102 bam 7.6 GB
EGAF00008271103 bam 6.8 GB
EGAF00008271104 bam 8.1 GB
EGAF00008271105 bam 6.7 GB
EGAF00008271106 bam 6.5 GB
EGAF00008271107 bam 5.6 GB
EGAF00008271108 bam 6.4 GB
EGAF00008271109 bam 7.0 GB
EGAF00008271110 bam 6.6 GB
EGAF00008271111 bam 7.4 GB
EGAF00008271112 bam 6.4 GB
EGAF00008271113 bam 7.2 GB
EGAF00008271114 bam 7.7 GB
EGAF00008271115 bam 6.1 GB
EGAF00008271116 bam 7.2 GB
EGAF00008271117 bam 7.8 GB
EGAF00008271118 bam 6.0 GB
EGAF00008271119 bam 6.6 GB
EGAF00008271120 bam 6.1 GB
EGAF00008271121 bam 7.4 GB
EGAF00008271122 bam 10.1 GB
EGAF00008271123 bam 7.5 GB
EGAF00008271124 bam 8.4 GB
EGAF00008271125 bam 7.1 GB
EGAF00008271126 bam 8.0 GB
EGAF00008271127 bam 6.7 GB
EGAF00008271128 bam 6.4 GB
EGAF00008271129 bam 7.1 GB
EGAF00008271130 bam 21.9 GB
EGAF00008271131 bam 11.6 GB
EGAF00008271132 bam 6.1 GB
EGAF00008271133 bam 7.4 GB
EGAF00008271134 bam 5.8 GB
EGAF00008271135 bam 7.8 GB
EGAF00008271136 bam 6.8 GB
EGAF00008271137 bam 9.2 GB
EGAF00008271138 bam 10.7 GB
EGAF00008271139 bam 6.0 GB
EGAF00008271140 bam 8.6 GB
EGAF00008271141 bam 8.0 GB
EGAF00008271142 bam 8.6 GB
EGAF00008271143 bam 7.9 GB
EGAF00008271144 bam 7.7 GB
EGAF00008271145 bam 7.1 GB
EGAF00008271146 bam 8.7 GB
EGAF00008271147 bam 7.4 GB
EGAF00008271148 bam 7.0 GB
EGAF00008271149 bam 6.4 GB
EGAF00008271150 bam 5.4 GB
EGAF00008271151 bam 7.9 GB
EGAF00008271152 bam 8.8 GB
EGAF00008271153 bam 7.0 GB
EGAF00008271154 bam 8.7 GB
EGAF00008271155 bam 6.2 GB
EGAF00008271156 bam 9.0 GB
EGAF00008271157 bam 6.9 GB
EGAF00008271158 bam 8.9 GB
EGAF00008271159 bam 7.4 GB
EGAF00008271160 bam 7.7 GB
EGAF00008271161 bam 5.5 GB
EGAF00008271162 bam 5.9 GB
EGAF00008271163 bam 9.0 GB
EGAF00008271164 bam 7.6 GB
EGAF00008271165 bam 7.8 GB
EGAF00008271166 bam 7.7 GB
EGAF00008271167 bam 6.9 GB
EGAF00008271168 bam 5.1 GB
EGAF00008271169 bam 6.4 GB
EGAF00008271170 bam 8.7 GB
EGAF00008271171 bam 6.0 GB
EGAF00008271172 bam 6.6 GB
EGAF00008271173 bam 7.1 GB
EGAF00008271174 bam 7.4 GB
EGAF00008271175 bam 7.6 GB
EGAF00008271176 bam 11.0 GB
EGAF00008271177 bam 6.7 GB
EGAF00008271178 bam 6.0 GB
EGAF00008271179 bam 4.9 GB
EGAF00008271180 bam 6.5 GB
EGAF00008271181 bam 6.9 GB
EGAF00008271182 bam 6.6 GB
EGAF00008271183 bam 6.5 GB
EGAF00008271184 bam 7.1 GB
EGAF00008271185 bam 5.9 GB
EGAF00008271186 bam 6.2 GB
EGAF00008271187 tar.gz 2.6 GB
92 Files (675.1 GB)