Need Help?

V(D)J and 5' Gene Expression data of bone marrow cells from patients with aplastic anemia

Viably frozen blood MNCs from 9 cGVHD patients were sorted with BD Influx Cell sorter, to enrich for CD45+ cells. Gene and V(D)J transcript profiles were studied with 10x Genomics Chromium Single Cell Immune Profiling platform. The Chromium Single Cell 5’RNAseq run and library preparation were done using the Chromium Next GEM Single Cell Immune Profiling version 1.1 chemistry. The raw data was processed using Cell Ranger v3.1 pipelines.

Request Access

Hematology Research Unit Helsinki Data access policy

The proposed research use must be consistent with the specific data use limitation for this study. Data use requests will be evaluated based on the Helsinki University Hospital ethics committee permit concerning the samples.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007602 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008272026 fastq.gz 1.9 GB
EGAF00008272027 fastq.gz 6.3 GB
EGAF00008272028 fastq.gz 15.8 GB
EGAF00008272029 fastq.gz 1.9 GB
EGAF00008272030 fastq.gz 6.2 GB
EGAF00008272031 fastq.gz 15.6 GB
EGAF00008272032 fastq.gz 317.7 MB
EGAF00008272033 fastq.gz 959.6 MB
EGAF00008272034 fastq.gz 2.1 GB
EGAF00008272035 fastq.gz 322.3 MB
EGAF00008272036 fastq.gz 976.7 MB
EGAF00008272037 fastq.gz 2.2 GB
EGAF00008272038 fastq.gz 1.3 GB
EGAF00008272039 fastq.gz 4.1 GB
EGAF00008272040 fastq.gz 10.1 GB
EGAF00008272041 fastq.gz 1.3 GB
EGAF00008272042 fastq.gz 4.2 GB
EGAF00008272043 fastq.gz 10.1 GB
EGAF00008272044 fastq.gz 197.1 MB
EGAF00008272045 fastq.gz 569.9 MB
EGAF00008272046 fastq.gz 1.3 GB
EGAF00008272047 fastq.gz 198.1 MB
EGAF00008272048 fastq.gz 574.6 MB
EGAF00008272049 fastq.gz 1.3 GB
EGAF00008272050 fastq.gz 1.3 GB
EGAF00008272051 fastq.gz 3.7 GB
EGAF00008272052 fastq.gz 9.2 GB
EGAF00008272053 fastq.gz 1.3 GB
EGAF00008272054 fastq.gz 3.7 GB
EGAF00008272055 fastq.gz 9.1 GB
EGAF00008272056 fastq.gz 236.3 MB
EGAF00008272057 fastq.gz 696.8 MB
EGAF00008272058 fastq.gz 1.5 GB
EGAF00008272059 fastq.gz 239.8 MB
EGAF00008272060 fastq.gz 707.9 MB
EGAF00008272061 fastq.gz 1.5 GB
EGAF00008272062 fastq.gz 1.9 GB
EGAF00008272063 fastq.gz 6.2 GB
EGAF00008272064 fastq.gz 15.6 GB
EGAF00008272065 fastq.gz 1.9 GB
EGAF00008272066 fastq.gz 6.2 GB
EGAF00008272067 fastq.gz 15.4 GB
EGAF00008272068 fastq.gz 332.4 MB
EGAF00008272069 fastq.gz 1.0 GB
EGAF00008272070 fastq.gz 2.2 GB
EGAF00008272071 fastq.gz 336.8 MB
EGAF00008272072 fastq.gz 1.0 GB
EGAF00008272073 fastq.gz 2.2 GB
EGAF00008272074 fastq.gz 1.8 GB
EGAF00008272075 fastq.gz 6.2 GB
EGAF00008272076 fastq.gz 15.6 GB
EGAF00008272077 fastq.gz 1.8 GB
EGAF00008272078 fastq.gz 6.2 GB
EGAF00008272079 fastq.gz 15.4 GB
EGAF00008272080 fastq.gz 338.9 MB
EGAF00008272081 fastq.gz 996.5 MB
EGAF00008272082 fastq.gz 2.2 GB
EGAF00008272083 fastq.gz 344.8 MB
EGAF00008272084 fastq.gz 1.0 GB
EGAF00008272085 fastq.gz 2.2 GB
EGAF00008272086 fastq.gz 1.8 GB
EGAF00008272087 fastq.gz 5.7 GB
EGAF00008272088 fastq.gz 13.9 GB
EGAF00008272089 fastq.gz 1.8 GB
EGAF00008272090 fastq.gz 5.8 GB
EGAF00008272091 fastq.gz 13.9 GB
EGAF00008272092 fastq.gz 370.0 MB
EGAF00008272093 fastq.gz 1.1 GB
EGAF00008272094 fastq.gz 2.4 GB
EGAF00008272095 fastq.gz 372.3 MB
EGAF00008272096 fastq.gz 1.1 GB
EGAF00008272097 fastq.gz 2.4 GB
EGAF00008272098 fastq.gz 2.5 GB
EGAF00008272099 fastq.gz 9.4 GB
EGAF00008272100 fastq.gz 24.2 GB
EGAF00008272101 fastq.gz 2.4 GB
EGAF00008272102 fastq.gz 9.2 GB
EGAF00008272103 fastq.gz 23.5 GB
EGAF00008272104 fastq.gz 343.0 MB
EGAF00008272105 fastq.gz 1.0 GB
EGAF00008272106 fastq.gz 2.3 GB
EGAF00008272107 fastq.gz 348.7 MB
EGAF00008272108 fastq.gz 1.1 GB
EGAF00008272109 fastq.gz 2.4 GB
EGAF00008272110 fastq.gz 2.1 GB
EGAF00008272111 fastq.gz 6.4 GB
EGAF00008272112 fastq.gz 15.9 GB
EGAF00008272113 fastq.gz 2.1 GB
EGAF00008272114 fastq.gz 6.4 GB
EGAF00008272115 fastq.gz 16.0 GB
EGAF00008272116 fastq.gz 264.1 MB
EGAF00008272117 fastq.gz 781.9 MB
EGAF00008272118 fastq.gz 1.6 GB
EGAF00008272119 fastq.gz 265.8 MB
EGAF00008272120 fastq.gz 789.4 MB
EGAF00008272121 fastq.gz 1.6 GB
EGAF00008272122 fastq.gz 2.1 GB
EGAF00008272123 fastq.gz 7.0 GB
EGAF00008272124 fastq.gz 16.8 GB
EGAF00008272125 fastq.gz 2.1 GB
EGAF00008272126 fastq.gz 7.0 GB
EGAF00008272127 fastq.gz 16.8 GB
EGAF00008272128 fastq.gz 235.8 MB
EGAF00008272129 fastq.gz 691.6 MB
EGAF00008272130 fastq.gz 1.6 GB
EGAF00008272131 fastq.gz 236.7 MB
EGAF00008272132 fastq.gz 696.3 MB
EGAF00008272133 fastq.gz 1.6 GB
EGAF00008272134 fastq.gz 2.0 GB
EGAF00008272135 fastq.gz 6.6 GB
EGAF00008272136 fastq.gz 16.7 GB
EGAF00008272137 fastq.gz 2.0 GB
EGAF00008272138 fastq.gz 6.6 GB
EGAF00008272139 fastq.gz 16.6 GB
EGAF00008272140 fastq.gz 302.7 MB
EGAF00008272141 fastq.gz 942.6 MB
EGAF00008272142 fastq.gz 2.1 GB
EGAF00008272143 fastq.gz 308.0 MB
EGAF00008272144 fastq.gz 959.5 MB
EGAF00008272145 fastq.gz 2.1 GB
EGAF00008272146 fastq.gz 2.0 GB
EGAF00008272147 fastq.gz 6.5 GB
EGAF00008272148 fastq.gz 16.2 GB
EGAF00008272149 fastq.gz 2.0 GB
EGAF00008272150 fastq.gz 6.4 GB
EGAF00008272151 fastq.gz 16.1 GB
EGAF00008272152 fastq.gz 347.0 MB
EGAF00008272153 fastq.gz 989.5 MB
EGAF00008272154 fastq.gz 2.2 GB
EGAF00008272155 fastq.gz 353.1 MB
EGAF00008272156 fastq.gz 1.0 GB
EGAF00008272157 fastq.gz 2.3 GB
EGAF00008272158 fastq.gz 1.9 GB
EGAF00008272159 fastq.gz 6.1 GB
EGAF00008272160 fastq.gz 15.3 GB
EGAF00008272161 fastq.gz 1.9 GB
EGAF00008272162 fastq.gz 6.0 GB
EGAF00008272163 fastq.gz 15.2 GB
EGAF00008272164 fastq.gz 324.1 MB
EGAF00008272165 fastq.gz 972.4 MB
EGAF00008272166 fastq.gz 2.1 GB
EGAF00008272167 fastq.gz 329.5 MB
EGAF00008272168 fastq.gz 990.7 MB
EGAF00008272169 fastq.gz 2.1 GB
144 Files (638.9 GB)