V(D)J and 5' Gene Expression data of bone marrow cells from patients with aplastic anemia
Viably frozen blood MNCs from 9 cGVHD patients were sorted with BD Influx Cell sorter, to enrich for CD45+ cells. Gene and V(D)J transcript profiles were studied with 10x Genomics Chromium Single Cell Immune Profiling platform. The Chromium Single Cell 5’RNAseq run and library preparation were done using the Chromium Next GEM Single Cell Immune Profiling version 1.1 chemistry. The raw data was processed using Cell Ranger v3.1 pipelines.
- 96 samples
- DAC: EGAC00001003456
- Technology: Illumina NovaSeq 6000
Hematology Research Unit Helsinki Data access policy
The proposed research use must be consistent with the specific data use limitation for this study. Data use requests will be evaluated based on the Helsinki University Hospital ethics committee permit concerning the samples.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001007602 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00008272026 | fastq.gz | 1.9 GB | ||
EGAF00008272027 | fastq.gz | 6.3 GB | ||
EGAF00008272028 | fastq.gz | 15.8 GB | ||
EGAF00008272029 | fastq.gz | 1.9 GB | ||
EGAF00008272030 | fastq.gz | 6.2 GB | ||
EGAF00008272031 | fastq.gz | 15.6 GB | ||
EGAF00008272032 | fastq.gz | 317.7 MB | ||
EGAF00008272033 | fastq.gz | 959.6 MB | ||
EGAF00008272034 | fastq.gz | 2.1 GB | ||
EGAF00008272035 | fastq.gz | 322.3 MB | ||
EGAF00008272036 | fastq.gz | 976.7 MB | ||
EGAF00008272037 | fastq.gz | 2.2 GB | ||
EGAF00008272038 | fastq.gz | 1.3 GB | ||
EGAF00008272039 | fastq.gz | 4.1 GB | ||
EGAF00008272040 | fastq.gz | 10.1 GB | ||
EGAF00008272041 | fastq.gz | 1.3 GB | ||
EGAF00008272042 | fastq.gz | 4.2 GB | ||
EGAF00008272043 | fastq.gz | 10.1 GB | ||
EGAF00008272044 | fastq.gz | 197.1 MB | ||
EGAF00008272045 | fastq.gz | 569.9 MB | ||
EGAF00008272046 | fastq.gz | 1.3 GB | ||
EGAF00008272047 | fastq.gz | 198.1 MB | ||
EGAF00008272048 | fastq.gz | 574.6 MB | ||
EGAF00008272049 | fastq.gz | 1.3 GB | ||
EGAF00008272050 | fastq.gz | 1.3 GB | ||
EGAF00008272051 | fastq.gz | 3.7 GB | ||
EGAF00008272052 | fastq.gz | 9.2 GB | ||
EGAF00008272053 | fastq.gz | 1.3 GB | ||
EGAF00008272054 | fastq.gz | 3.7 GB | ||
EGAF00008272055 | fastq.gz | 9.1 GB | ||
EGAF00008272056 | fastq.gz | 236.3 MB | ||
EGAF00008272057 | fastq.gz | 696.8 MB | ||
EGAF00008272058 | fastq.gz | 1.5 GB | ||
EGAF00008272059 | fastq.gz | 239.8 MB | ||
EGAF00008272060 | fastq.gz | 707.9 MB | ||
EGAF00008272061 | fastq.gz | 1.5 GB | ||
EGAF00008272062 | fastq.gz | 1.9 GB | ||
EGAF00008272063 | fastq.gz | 6.2 GB | ||
EGAF00008272064 | fastq.gz | 15.6 GB | ||
EGAF00008272065 | fastq.gz | 1.9 GB | ||
EGAF00008272066 | fastq.gz | 6.2 GB | ||
EGAF00008272067 | fastq.gz | 15.4 GB | ||
EGAF00008272068 | fastq.gz | 332.4 MB | ||
EGAF00008272069 | fastq.gz | 1.0 GB | ||
EGAF00008272070 | fastq.gz | 2.2 GB | ||
EGAF00008272071 | fastq.gz | 336.8 MB | ||
EGAF00008272072 | fastq.gz | 1.0 GB | ||
EGAF00008272073 | fastq.gz | 2.2 GB | ||
EGAF00008272074 | fastq.gz | 1.8 GB | ||
EGAF00008272075 | fastq.gz | 6.2 GB | ||
EGAF00008272076 | fastq.gz | 15.6 GB | ||
EGAF00008272077 | fastq.gz | 1.8 GB | ||
EGAF00008272078 | fastq.gz | 6.2 GB | ||
EGAF00008272079 | fastq.gz | 15.4 GB | ||
EGAF00008272080 | fastq.gz | 338.9 MB | ||
EGAF00008272081 | fastq.gz | 996.5 MB | ||
EGAF00008272082 | fastq.gz | 2.2 GB | ||
EGAF00008272083 | fastq.gz | 344.8 MB | ||
EGAF00008272084 | fastq.gz | 1.0 GB | ||
EGAF00008272085 | fastq.gz | 2.2 GB | ||
EGAF00008272086 | fastq.gz | 1.8 GB | ||
EGAF00008272087 | fastq.gz | 5.7 GB | ||
EGAF00008272088 | fastq.gz | 13.9 GB | ||
EGAF00008272089 | fastq.gz | 1.8 GB | ||
EGAF00008272090 | fastq.gz | 5.8 GB | ||
EGAF00008272091 | fastq.gz | 13.9 GB | ||
EGAF00008272092 | fastq.gz | 370.0 MB | ||
EGAF00008272093 | fastq.gz | 1.1 GB | ||
EGAF00008272094 | fastq.gz | 2.4 GB | ||
EGAF00008272095 | fastq.gz | 372.3 MB | ||
EGAF00008272096 | fastq.gz | 1.1 GB | ||
EGAF00008272097 | fastq.gz | 2.4 GB | ||
EGAF00008272098 | fastq.gz | 2.5 GB | ||
EGAF00008272099 | fastq.gz | 9.4 GB | ||
EGAF00008272100 | fastq.gz | 24.2 GB | ||
EGAF00008272101 | fastq.gz | 2.4 GB | ||
EGAF00008272102 | fastq.gz | 9.2 GB | ||
EGAF00008272103 | fastq.gz | 23.5 GB | ||
EGAF00008272104 | fastq.gz | 343.0 MB | ||
EGAF00008272105 | fastq.gz | 1.0 GB | ||
EGAF00008272106 | fastq.gz | 2.3 GB | ||
EGAF00008272107 | fastq.gz | 348.7 MB | ||
EGAF00008272108 | fastq.gz | 1.1 GB | ||
EGAF00008272109 | fastq.gz | 2.4 GB | ||
EGAF00008272110 | fastq.gz | 2.1 GB | ||
EGAF00008272111 | fastq.gz | 6.4 GB | ||
EGAF00008272112 | fastq.gz | 15.9 GB | ||
EGAF00008272113 | fastq.gz | 2.1 GB | ||
EGAF00008272114 | fastq.gz | 6.4 GB | ||
EGAF00008272115 | fastq.gz | 16.0 GB | ||
EGAF00008272116 | fastq.gz | 264.1 MB | ||
EGAF00008272117 | fastq.gz | 781.9 MB | ||
EGAF00008272118 | fastq.gz | 1.6 GB | ||
EGAF00008272119 | fastq.gz | 265.8 MB | ||
EGAF00008272120 | fastq.gz | 789.4 MB | ||
EGAF00008272121 | fastq.gz | 1.6 GB | ||
EGAF00008272122 | fastq.gz | 2.1 GB | ||
EGAF00008272123 | fastq.gz | 7.0 GB | ||
EGAF00008272124 | fastq.gz | 16.8 GB | ||
EGAF00008272125 | fastq.gz | 2.1 GB | ||
EGAF00008272126 | fastq.gz | 7.0 GB | ||
EGAF00008272127 | fastq.gz | 16.8 GB | ||
EGAF00008272128 | fastq.gz | 235.8 MB | ||
EGAF00008272129 | fastq.gz | 691.6 MB | ||
EGAF00008272130 | fastq.gz | 1.6 GB | ||
EGAF00008272131 | fastq.gz | 236.7 MB | ||
EGAF00008272132 | fastq.gz | 696.3 MB | ||
EGAF00008272133 | fastq.gz | 1.6 GB | ||
EGAF00008272134 | fastq.gz | 2.0 GB | ||
EGAF00008272135 | fastq.gz | 6.6 GB | ||
EGAF00008272136 | fastq.gz | 16.7 GB | ||
EGAF00008272137 | fastq.gz | 2.0 GB | ||
EGAF00008272138 | fastq.gz | 6.6 GB | ||
EGAF00008272139 | fastq.gz | 16.6 GB | ||
EGAF00008272140 | fastq.gz | 302.7 MB | ||
EGAF00008272141 | fastq.gz | 942.6 MB | ||
EGAF00008272142 | fastq.gz | 2.1 GB | ||
EGAF00008272143 | fastq.gz | 308.0 MB | ||
EGAF00008272144 | fastq.gz | 959.5 MB | ||
EGAF00008272145 | fastq.gz | 2.1 GB | ||
EGAF00008272146 | fastq.gz | 2.0 GB | ||
EGAF00008272147 | fastq.gz | 6.5 GB | ||
EGAF00008272148 | fastq.gz | 16.2 GB | ||
EGAF00008272149 | fastq.gz | 2.0 GB | ||
EGAF00008272150 | fastq.gz | 6.4 GB | ||
EGAF00008272151 | fastq.gz | 16.1 GB | ||
EGAF00008272152 | fastq.gz | 347.0 MB | ||
EGAF00008272153 | fastq.gz | 989.5 MB | ||
EGAF00008272154 | fastq.gz | 2.2 GB | ||
EGAF00008272155 | fastq.gz | 353.1 MB | ||
EGAF00008272156 | fastq.gz | 1.0 GB | ||
EGAF00008272157 | fastq.gz | 2.3 GB | ||
EGAF00008272158 | fastq.gz | 1.9 GB | ||
EGAF00008272159 | fastq.gz | 6.1 GB | ||
EGAF00008272160 | fastq.gz | 15.3 GB | ||
EGAF00008272161 | fastq.gz | 1.9 GB | ||
EGAF00008272162 | fastq.gz | 6.0 GB | ||
EGAF00008272163 | fastq.gz | 15.2 GB | ||
EGAF00008272164 | fastq.gz | 324.1 MB | ||
EGAF00008272165 | fastq.gz | 972.4 MB | ||
EGAF00008272166 | fastq.gz | 2.1 GB | ||
EGAF00008272167 | fastq.gz | 329.5 MB | ||
EGAF00008272168 | fastq.gz | 990.7 MB | ||
EGAF00008272169 | fastq.gz | 2.1 GB | ||
144 Files (638.9 GB) |