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scRNAseq of aplastic anemia and healthy immune cells co-cultured with autologous HSPCs

This dataset contains 8 batches of bone marrow or peripheral blood cells of patients with aplastic anemia and bone marrow cells of healthy controls. The samples from different experimental conditions have been multiplexed with Totalseq-C antibodies (feature barcoding). To demultiplex the samples, see instructions in 10.5281/zenodo.2590196 and https://github.com/janihuuh/aa_manu. Each sample is analysed with Chromium V(D)J and 5' Gene Expression Platform v2 (10X Genomics). The raw data includes fastq files for Gene expression, feature barcodes and V(D)J Expression. The processed data have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress).

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Hematology Research Unit Helsinki Data access policy

The proposed research use must be consistent with the specific data use limitation for this study. Data use requests will be evaluated based on the Helsinki University Hospital ethics committee permit concerning the samples.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007604 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008272420 fastq.gz 51.6 MB
EGAF00008272421 fastq.gz 50.9 MB
EGAF00008272422 fastq.gz 125.4 MB
EGAF00008272423 fastq.gz 238.8 MB
EGAF00008272424 fastq.gz 51.0 MB
EGAF00008272425 fastq.gz 50.1 MB
EGAF00008272426 fastq.gz 123.7 MB
EGAF00008272427 fastq.gz 234.9 MB
EGAF00008272428 fastq.gz 49.4 MB
EGAF00008272429 fastq.gz 48.6 MB
EGAF00008272430 fastq.gz 119.9 MB
EGAF00008272431 fastq.gz 228.0 MB
EGAF00008272432 fastq.gz 46.8 MB
EGAF00008272433 fastq.gz 45.7 MB
EGAF00008272434 fastq.gz 112.4 MB
EGAF00008272435 fastq.gz 212.4 MB
EGAF00008272436 fastq.gz 635.7 MB
EGAF00008272437 fastq.gz 651.1 MB
EGAF00008272438 fastq.gz 1.8 GB
EGAF00008272439 fastq.gz 4.4 GB
EGAF00008272440 fastq.gz 638.8 MB
EGAF00008272441 fastq.gz 652.9 MB
EGAF00008272442 fastq.gz 1.8 GB
EGAF00008272443 fastq.gz 4.4 GB
EGAF00008272444 fastq.gz 633.4 MB
EGAF00008272445 fastq.gz 649.3 MB
EGAF00008272446 fastq.gz 1.8 GB
EGAF00008272447 fastq.gz 4.4 GB
EGAF00008272448 fastq.gz 649.6 MB
EGAF00008272449 fastq.gz 661.8 MB
EGAF00008272450 fastq.gz 1.8 GB
EGAF00008272451 fastq.gz 4.4 GB
EGAF00008272452 fastq.gz 63.8 MB
EGAF00008272453 fastq.gz 65.3 MB
EGAF00008272454 fastq.gz 162.7 MB
EGAF00008272455 fastq.gz 332.9 MB
EGAF00008272456 fastq.gz 63.5 MB
EGAF00008272457 fastq.gz 64.3 MB
EGAF00008272458 fastq.gz 161.7 MB
EGAF00008272459 fastq.gz 329.7 MB
EGAF00008272460 fastq.gz 64.5 MB
EGAF00008272461 fastq.gz 65.6 MB
EGAF00008272462 fastq.gz 164.2 MB
EGAF00008272463 fastq.gz 335.2 MB
EGAF00008272464 fastq.gz 64.5 MB
EGAF00008272465 fastq.gz 65.2 MB
EGAF00008272466 fastq.gz 163.3 MB
EGAF00008272467 fastq.gz 332.3 MB
EGAF00008272468 fastq.gz 72.1 MB
EGAF00008272469 fastq.gz 62.8 MB
EGAF00008272470 fastq.gz 171.1 MB
EGAF00008272471 fastq.gz 326.2 MB
EGAF00008272472 fastq.gz 71.1 MB
EGAF00008272473 fastq.gz 62.4 MB
EGAF00008272474 fastq.gz 168.5 MB
EGAF00008272475 fastq.gz 320.2 MB
EGAF00008272476 fastq.gz 69.0 MB
EGAF00008272477 fastq.gz 60.4 MB
EGAF00008272478 fastq.gz 163.3 MB
EGAF00008272479 fastq.gz 310.9 MB
EGAF00008272480 fastq.gz 64.7 MB
EGAF00008272481 fastq.gz 57.3 MB
EGAF00008272482 fastq.gz 152.5 MB
EGAF00008272483 fastq.gz 288.7 MB
EGAF00008272484 fastq.gz 889.1 MB
EGAF00008272485 fastq.gz 979.0 MB
EGAF00008272486 fastq.gz 2.8 GB
EGAF00008272487 fastq.gz 7.0 GB
EGAF00008272488 fastq.gz 890.1 MB
EGAF00008272489 fastq.gz 976.9 MB
EGAF00008272490 fastq.gz 2.8 GB
EGAF00008272491 fastq.gz 7.0 GB
EGAF00008272492 fastq.gz 894.8 MB
EGAF00008272493 fastq.gz 984.6 MB
EGAF00008272494 fastq.gz 2.8 GB
EGAF00008272495 fastq.gz 7.0 GB
EGAF00008272496 fastq.gz 893.9 MB
EGAF00008272497 fastq.gz 973.3 MB
EGAF00008272498 fastq.gz 2.8 GB
EGAF00008272499 fastq.gz 6.9 GB
EGAF00008272500 fastq.gz 130.6 MB
EGAF00008272501 fastq.gz 146.2 MB
EGAF00008272502 fastq.gz 386.4 MB
EGAF00008272503 fastq.gz 830.2 MB
EGAF00008272504 fastq.gz 129.3 MB
EGAF00008272505 fastq.gz 144.1 MB
EGAF00008272506 fastq.gz 382.2 MB
EGAF00008272507 fastq.gz 817.9 MB
EGAF00008272508 fastq.gz 131.8 MB
EGAF00008272509 fastq.gz 148.2 MB
EGAF00008272510 fastq.gz 390.1 MB
EGAF00008272511 fastq.gz 836.8 MB
EGAF00008272512 fastq.gz 129.8 MB
EGAF00008272513 fastq.gz 144.7 MB
EGAF00008272514 fastq.gz 379.4 MB
EGAF00008272515 fastq.gz 809.7 MB
EGAF00008272516 fastq.gz 256.2 MB
EGAF00008272517 fastq.gz 242.2 MB
EGAF00008272518 fastq.gz 692.7 MB
EGAF00008272519 fastq.gz 1.3 GB
EGAF00008272520 fastq.gz 253.3 MB
EGAF00008272521 fastq.gz 238.6 MB
EGAF00008272522 fastq.gz 682.3 MB
EGAF00008272523 fastq.gz 1.3 GB
EGAF00008272524 fastq.gz 245.0 MB
EGAF00008272525 fastq.gz 231.0 MB
EGAF00008272526 fastq.gz 659.7 MB
EGAF00008272527 fastq.gz 1.2 GB
EGAF00008272528 fastq.gz 233.7 MB
EGAF00008272529 fastq.gz 221.0 MB
EGAF00008272530 fastq.gz 622.3 MB
EGAF00008272531 fastq.gz 1.2 GB
EGAF00008272532 fastq.gz 3.0 GB
EGAF00008272533 fastq.gz 2.8 GB
EGAF00008272534 fastq.gz 10.1 GB
EGAF00008272535 fastq.gz 25.0 GB
EGAF00008272536 fastq.gz 3.0 GB
EGAF00008272537 fastq.gz 2.8 GB
EGAF00008272538 fastq.gz 10.0 GB
EGAF00008272539 fastq.gz 25.0 GB
EGAF00008272540 fastq.gz 3.0 GB
EGAF00008272541 fastq.gz 2.8 GB
EGAF00008272542 fastq.gz 10.0 GB
EGAF00008272543 fastq.gz 25.0 GB
EGAF00008272544 fastq.gz 3.0 GB
EGAF00008272545 fastq.gz 2.8 GB
EGAF00008272546 fastq.gz 10.0 GB
EGAF00008272547 fastq.gz 24.8 GB
EGAF00008272548 fastq.gz 713.1 MB
EGAF00008272549 fastq.gz 787.7 MB
EGAF00008272550 fastq.gz 2.2 GB
EGAF00008272551 fastq.gz 5.4 GB
EGAF00008272552 fastq.gz 706.5 MB
EGAF00008272553 fastq.gz 774.7 MB
EGAF00008272554 fastq.gz 2.2 GB
EGAF00008272555 fastq.gz 5.3 GB
EGAF00008272556 fastq.gz 720.9 MB
EGAF00008272557 fastq.gz 804.1 MB
EGAF00008272558 fastq.gz 2.3 GB
EGAF00008272559 fastq.gz 5.5 GB
EGAF00008272560 fastq.gz 706.3 MB
EGAF00008272561 fastq.gz 768.8 MB
EGAF00008272562 fastq.gz 2.2 GB
EGAF00008272563 fastq.gz 5.2 GB
EGAF00008272564 fastq.gz 73.2 MB
EGAF00008272565 fastq.gz 70.8 MB
EGAF00008272566 fastq.gz 197.9 MB
EGAF00008272567 fastq.gz 377.5 MB
EGAF00008272568 fastq.gz 72.2 MB
EGAF00008272569 fastq.gz 69.7 MB
EGAF00008272570 fastq.gz 194.7 MB
EGAF00008272571 fastq.gz 370.1 MB
EGAF00008272572 fastq.gz 70.1 MB
EGAF00008272573 fastq.gz 67.7 MB
EGAF00008272574 fastq.gz 189.0 MB
EGAF00008272575 fastq.gz 360.2 MB
EGAF00008272576 fastq.gz 66.3 MB
EGAF00008272577 fastq.gz 64.6 MB
EGAF00008272578 fastq.gz 176.4 MB
EGAF00008272579 fastq.gz 333.8 MB
EGAF00008272580 fastq.gz 825.6 MB
EGAF00008272581 fastq.gz 957.4 MB
EGAF00008272582 fastq.gz 2.7 GB
EGAF00008272583 fastq.gz 6.7 GB
EGAF00008272584 fastq.gz 830.3 MB
EGAF00008272585 fastq.gz 960.1 MB
EGAF00008272586 fastq.gz 2.7 GB
EGAF00008272587 fastq.gz 6.6 GB
EGAF00008272588 fastq.gz 826.8 MB
EGAF00008272589 fastq.gz 955.7 MB
EGAF00008272590 fastq.gz 2.7 GB
EGAF00008272591 fastq.gz 6.6 GB
EGAF00008272592 fastq.gz 844.0 MB
EGAF00008272593 fastq.gz 972.8 MB
EGAF00008272594 fastq.gz 2.7 GB
EGAF00008272595 fastq.gz 6.6 GB
EGAF00008272596 fastq.gz 115.0 MB
EGAF00008272597 fastq.gz 114.0 MB
EGAF00008272598 fastq.gz 292.4 MB
EGAF00008272599 fastq.gz 616.0 MB
EGAF00008272600 fastq.gz 114.0 MB
EGAF00008272601 fastq.gz 112.6 MB
EGAF00008272602 fastq.gz 289.3 MB
EGAF00008272603 fastq.gz 607.0 MB
EGAF00008272604 fastq.gz 116.3 MB
EGAF00008272605 fastq.gz 115.6 MB
EGAF00008272606 fastq.gz 295.6 MB
EGAF00008272607 fastq.gz 621.3 MB
EGAF00008272608 fastq.gz 114.4 MB
EGAF00008272609 fastq.gz 112.9 MB
EGAF00008272610 fastq.gz 289.1 MB
EGAF00008272611 fastq.gz 605.5 MB
EGAF00008272612 fastq.gz 254.1 MB
EGAF00008272613 fastq.gz 235.4 MB
EGAF00008272614 fastq.gz 714.9 MB
EGAF00008272615 fastq.gz 1.4 GB
EGAF00008272616 fastq.gz 251.4 MB
EGAF00008272617 fastq.gz 232.2 MB
EGAF00008272618 fastq.gz 704.0 MB
EGAF00008272619 fastq.gz 1.3 GB
EGAF00008272620 fastq.gz 243.0 MB
EGAF00008272621 fastq.gz 225.0 MB
EGAF00008272622 fastq.gz 681.2 MB
EGAF00008272623 fastq.gz 1.3 GB
EGAF00008272624 fastq.gz 233.1 MB
EGAF00008272625 fastq.gz 215.0 MB
EGAF00008272626 fastq.gz 639.7 MB
EGAF00008272627 fastq.gz 1.2 GB
EGAF00008272628 fastq.gz 3.1 GB
EGAF00008272629 fastq.gz 3.3 GB
EGAF00008272630 fastq.gz 10.4 GB
EGAF00008272631 fastq.gz 26.4 GB
EGAF00008272632 fastq.gz 3.2 GB
EGAF00008272633 fastq.gz 3.3 GB
EGAF00008272634 fastq.gz 10.4 GB
EGAF00008272635 fastq.gz 26.4 GB
EGAF00008272636 fastq.gz 3.2 GB
EGAF00008272637 fastq.gz 3.4 GB
EGAF00008272638 fastq.gz 10.5 GB
EGAF00008272639 fastq.gz 26.5 GB
EGAF00008272640 fastq.gz 3.2 GB
EGAF00008272641 fastq.gz 3.4 GB
EGAF00008272642 fastq.gz 10.4 GB
EGAF00008272643 fastq.gz 26.2 GB
EGAF00008272644 fastq.gz 648.3 MB
EGAF00008272645 fastq.gz 760.1 MB
EGAF00008272646 fastq.gz 1.9 GB
EGAF00008272647 fastq.gz 4.8 GB
EGAF00008272648 fastq.gz 645.9 MB
EGAF00008272649 fastq.gz 748.7 MB
EGAF00008272650 fastq.gz 1.9 GB
EGAF00008272651 fastq.gz 4.7 GB
EGAF00008272652 fastq.gz 664.8 MB
EGAF00008272653 fastq.gz 775.5 MB
EGAF00008272654 fastq.gz 2.0 GB
EGAF00008272655 fastq.gz 4.9 GB
EGAF00008272656 fastq.gz 642.5 MB
EGAF00008272657 fastq.gz 736.8 MB
EGAF00008272658 fastq.gz 1.9 GB
EGAF00008272659 fastq.gz 4.6 GB
EGAF00008272660 fastq.gz 1.2 GB
EGAF00008272661 fastq.gz 1.0 GB
EGAF00008272662 fastq.gz 3.3 GB
EGAF00008272663 fastq.gz 6.2 GB
EGAF00008272664 fastq.gz 7.2 GB
EGAF00008272665 fastq.gz 8.2 GB
EGAF00008272666 fastq.gz 30.1 GB
EGAF00008272667 fastq.gz 75.1 GB
EGAF00008272668 fastq.gz 1.3 GB
EGAF00008272669 fastq.gz 1.4 GB
EGAF00008272670 fastq.gz 4.1 GB
EGAF00008272671 fastq.gz 9.8 GB
EGAF00008272672 fastq.gz 33.5 MB
EGAF00008272673 fastq.gz 30.9 MB
EGAF00008272674 fastq.gz 85.8 MB
EGAF00008272675 fastq.gz 161.9 MB
EGAF00008272676 fastq.gz 33.1 MB
EGAF00008272677 fastq.gz 30.5 MB
EGAF00008272678 fastq.gz 84.3 MB
EGAF00008272679 fastq.gz 158.7 MB
EGAF00008272680 fastq.gz 32.1 MB
EGAF00008272681 fastq.gz 29.4 MB
EGAF00008272682 fastq.gz 81.7 MB
EGAF00008272683 fastq.gz 154.0 MB
EGAF00008272684 fastq.gz 30.4 MB
EGAF00008272685 fastq.gz 28.0 MB
EGAF00008272686 fastq.gz 76.0 MB
EGAF00008272687 fastq.gz 142.5 MB
EGAF00008272688 fastq.gz 399.1 MB
EGAF00008272689 fastq.gz 498.9 MB
EGAF00008272690 fastq.gz 1.3 GB
EGAF00008272691 fastq.gz 3.1 GB
EGAF00008272692 fastq.gz 400.5 MB
EGAF00008272693 fastq.gz 498.6 MB
EGAF00008272694 fastq.gz 1.3 GB
EGAF00008272695 fastq.gz 3.1 GB
EGAF00008272696 fastq.gz 399.3 MB
EGAF00008272697 fastq.gz 499.4 MB
EGAF00008272698 fastq.gz 1.2 GB
EGAF00008272699 fastq.gz 3.1 GB
EGAF00008272700 fastq.gz 404.3 MB
EGAF00008272701 fastq.gz 496.5 MB
EGAF00008272702 fastq.gz 1.2 GB
EGAF00008272703 fastq.gz 3.0 GB
EGAF00008272704 fastq.gz 50.3 MB
EGAF00008272705 fastq.gz 59.5 MB
EGAF00008272706 fastq.gz 142.5 MB
EGAF00008272707 fastq.gz 312.0 MB
EGAF00008272708 fastq.gz 49.8 MB
EGAF00008272709 fastq.gz 58.5 MB
EGAF00008272710 fastq.gz 140.9 MB
EGAF00008272711 fastq.gz 307.2 MB
EGAF00008272712 fastq.gz 50.7 MB
EGAF00008272713 fastq.gz 59.9 MB
EGAF00008272714 fastq.gz 143.7 MB
EGAF00008272715 fastq.gz 314.8 MB
EGAF00008272716 fastq.gz 50.0 MB
EGAF00008272717 fastq.gz 58.7 MB
EGAF00008272718 fastq.gz 140.4 MB
EGAF00008272719 fastq.gz 304.9 MB
EGAF00008272720 fastq.gz 254.1 MB
EGAF00008272721 fastq.gz 266.1 MB
EGAF00008272722 fastq.gz 692.4 MB
EGAF00008272723 fastq.gz 1.4 GB
EGAF00008272724 fastq.gz 250.9 MB
EGAF00008272725 fastq.gz 262.9 MB
EGAF00008272726 fastq.gz 680.9 MB
EGAF00008272727 fastq.gz 1.3 GB
EGAF00008272728 fastq.gz 242.6 MB
EGAF00008272729 fastq.gz 254.3 MB
EGAF00008272730 fastq.gz 658.7 MB
EGAF00008272731 fastq.gz 1.3 GB
EGAF00008272732 fastq.gz 231.0 MB
EGAF00008272733 fastq.gz 239.3 MB
EGAF00008272734 fastq.gz 614.3 MB
EGAF00008272735 fastq.gz 1.2 GB
EGAF00008272736 fastq.gz 2.5 GB
EGAF00008272737 fastq.gz 2.7 GB
EGAF00008272738 fastq.gz 9.0 GB
EGAF00008272739 fastq.gz 22.5 GB
EGAF00008272740 fastq.gz 2.5 GB
EGAF00008272741 fastq.gz 2.7 GB
EGAF00008272742 fastq.gz 9.0 GB
EGAF00008272743 fastq.gz 22.5 GB
EGAF00008272744 fastq.gz 2.5 GB
EGAF00008272745 fastq.gz 2.7 GB
EGAF00008272746 fastq.gz 9.0 GB
EGAF00008272747 fastq.gz 22.6 GB
EGAF00008272748 fastq.gz 2.5 GB
EGAF00008272749 fastq.gz 2.7 GB
EGAF00008272750 fastq.gz 9.0 GB
EGAF00008272751 fastq.gz 22.4 GB
EGAF00008272752 fastq.gz 543.8 MB
EGAF00008272753 fastq.gz 611.5 MB
EGAF00008272754 fastq.gz 1.7 GB
EGAF00008272755 fastq.gz 4.2 GB
EGAF00008272756 fastq.gz 536.8 MB
EGAF00008272757 fastq.gz 598.9 MB
EGAF00008272758 fastq.gz 1.7 GB
EGAF00008272759 fastq.gz 4.1 GB
EGAF00008272760 fastq.gz 552.5 MB
EGAF00008272761 fastq.gz 624.5 MB
EGAF00008272762 fastq.gz 1.7 GB
EGAF00008272763 fastq.gz 4.3 GB
EGAF00008272764 fastq.gz 530.4 MB
EGAF00008272765 fastq.gz 586.0 MB
EGAF00008272766 fastq.gz 1.6 GB
EGAF00008272767 fastq.gz 4.0 GB
348 Files (923.4 GB)