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scRNAseq of patients with chronic graft-versus-host-disease

This dataset contains 10 samples from 9 patients with chronic graft-versus-host disease (GVHD). Each sample is analysed with Chromium V(D)J and 5' Gene Expression Platform v1.1 (10X Genomics). The raw data includes fastq files for Gene expression and fastq files for V(D)J Expression. The processed data have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-13419.

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Hematology Research Unit Helsinki Data access policy

The proposed research use must be consistent with the specific data use limitation for this study. Data use requests will be evaluated based on the Helsinki University Hospital ethics committee permit concerning the samples.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007606 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008272912 fastq.gz 1.1 GB
EGAF00008272913 fastq.gz 3.2 GB
EGAF00008272914 fastq.gz 7.9 GB
EGAF00008272915 fastq.gz 1.1 GB
EGAF00008272916 fastq.gz 3.2 GB
EGAF00008272917 fastq.gz 7.9 GB
EGAF00008272918 fastq.gz 1.1 GB
EGAF00008272919 fastq.gz 3.2 GB
EGAF00008272920 fastq.gz 7.8 GB
EGAF00008272921 fastq.gz 1.1 GB
EGAF00008272922 fastq.gz 3.2 GB
EGAF00008272923 fastq.gz 7.8 GB
EGAF00008272924 fastq.gz 1.2 GB
EGAF00008272925 fastq.gz 3.8 GB
EGAF00008272926 fastq.gz 9.4 GB
EGAF00008272927 fastq.gz 1.2 GB
EGAF00008272928 fastq.gz 3.8 GB
EGAF00008272929 fastq.gz 9.3 GB
EGAF00008272930 fastq.gz 1.2 GB
EGAF00008272931 fastq.gz 3.8 GB
EGAF00008272932 fastq.gz 9.3 GB
EGAF00008272933 fastq.gz 1.2 GB
EGAF00008272934 fastq.gz 3.8 GB
EGAF00008272935 fastq.gz 9.3 GB
EGAF00008272936 fastq.gz 169.0 MB
EGAF00008272937 fastq.gz 500.4 MB
EGAF00008272938 fastq.gz 1.1 GB
EGAF00008272939 fastq.gz 171.0 MB
EGAF00008272940 fastq.gz 510.3 MB
EGAF00008272941 fastq.gz 1.2 GB
EGAF00008272942 fastq.gz 150.3 MB
EGAF00008272943 fastq.gz 459.5 MB
EGAF00008272944 fastq.gz 996.4 MB
EGAF00008272945 fastq.gz 151.5 MB
EGAF00008272946 fastq.gz 466.5 MB
EGAF00008272947 fastq.gz 1.0 GB
EGAF00008272948 fastq.gz 1.5 GB
EGAF00008272949 fastq.gz 4.8 GB
EGAF00008272950 fastq.gz 11.7 GB
EGAF00008272951 fastq.gz 1.5 GB
EGAF00008272952 fastq.gz 4.8 GB
EGAF00008272953 fastq.gz 11.7 GB
EGAF00008272954 fastq.gz 1.5 GB
EGAF00008272955 fastq.gz 4.8 GB
EGAF00008272956 fastq.gz 11.6 GB
EGAF00008272957 fastq.gz 1.5 GB
EGAF00008272958 fastq.gz 4.8 GB
EGAF00008272959 fastq.gz 11.6 GB
EGAF00008272960 fastq.gz 181.3 MB
EGAF00008272961 fastq.gz 535.0 MB
EGAF00008272962 fastq.gz 1.2 GB
EGAF00008272963 fastq.gz 183.8 MB
EGAF00008272964 fastq.gz 545.8 MB
EGAF00008272965 fastq.gz 1.2 GB
EGAF00008272966 fastq.gz 1.3 GB
EGAF00008272967 fastq.gz 3.9 GB
EGAF00008272968 fastq.gz 9.6 GB
EGAF00008272969 fastq.gz 1.3 GB
EGAF00008272970 fastq.gz 3.9 GB
EGAF00008272971 fastq.gz 9.6 GB
EGAF00008272972 fastq.gz 1.3 GB
EGAF00008272973 fastq.gz 3.9 GB
EGAF00008272974 fastq.gz 9.6 GB
EGAF00008272975 fastq.gz 1.3 GB
EGAF00008272976 fastq.gz 3.9 GB
EGAF00008272977 fastq.gz 9.6 GB
EGAF00008272978 fastq.gz 151.4 MB
EGAF00008272979 fastq.gz 438.7 MB
EGAF00008272980 fastq.gz 981.6 MB
EGAF00008272981 fastq.gz 152.3 MB
EGAF00008272982 fastq.gz 445.3 MB
EGAF00008272983 fastq.gz 994.0 MB
EGAF00008272984 fastq.gz 1.3 GB
EGAF00008272985 fastq.gz 3.8 GB
EGAF00008272986 fastq.gz 9.2 GB
EGAF00008272987 fastq.gz 1.3 GB
EGAF00008272988 fastq.gz 3.8 GB
EGAF00008272989 fastq.gz 9.2 GB
EGAF00008272990 fastq.gz 1.3 GB
EGAF00008272991 fastq.gz 3.8 GB
EGAF00008272992 fastq.gz 9.1 GB
EGAF00008272993 fastq.gz 1.3 GB
EGAF00008272994 fastq.gz 3.8 GB
EGAF00008272995 fastq.gz 9.2 GB
EGAF00008272996 fastq.gz 189.5 MB
EGAF00008272997 fastq.gz 577.9 MB
EGAF00008272998 fastq.gz 1.3 GB
EGAF00008272999 fastq.gz 191.2 MB
EGAF00008273000 fastq.gz 587.0 MB
EGAF00008273001 fastq.gz 1.3 GB
EGAF00008273002 fastq.gz 1.4 GB
EGAF00008273003 fastq.gz 4.5 GB
EGAF00008273004 fastq.gz 11.0 GB
EGAF00008273005 fastq.gz 1.4 GB
EGAF00008273006 fastq.gz 4.5 GB
EGAF00008273007 fastq.gz 11.0 GB
EGAF00008273008 fastq.gz 1.4 GB
EGAF00008273009 fastq.gz 4.5 GB
EGAF00008273010 fastq.gz 10.9 GB
EGAF00008273011 fastq.gz 1.4 GB
EGAF00008273012 fastq.gz 4.5 GB
EGAF00008273013 fastq.gz 10.9 GB
EGAF00008273014 fastq.gz 183.6 MB
EGAF00008273015 fastq.gz 550.3 MB
EGAF00008273016 fastq.gz 1.3 GB
EGAF00008273017 fastq.gz 185.0 MB
EGAF00008273018 fastq.gz 559.4 MB
EGAF00008273019 fastq.gz 1.3 GB
EGAF00008273020 fastq.gz 1.2 GB
EGAF00008273021 fastq.gz 3.8 GB
EGAF00008273022 fastq.gz 9.2 GB
EGAF00008273023 fastq.gz 1.2 GB
EGAF00008273024 fastq.gz 3.8 GB
EGAF00008273025 fastq.gz 9.2 GB
EGAF00008273026 fastq.gz 1.2 GB
EGAF00008273027 fastq.gz 3.8 GB
EGAF00008273028 fastq.gz 9.1 GB
EGAF00008273029 fastq.gz 1.2 GB
EGAF00008273030 fastq.gz 3.8 GB
EGAF00008273031 fastq.gz 9.2 GB
EGAF00008273032 fastq.gz 213.8 MB
EGAF00008273033 fastq.gz 609.7 MB
EGAF00008273034 fastq.gz 1.4 GB
EGAF00008273035 fastq.gz 216.6 MB
EGAF00008273036 fastq.gz 621.0 MB
EGAF00008273037 fastq.gz 1.4 GB
EGAF00008273038 fastq.gz 1.3 GB
EGAF00008273039 fastq.gz 4.0 GB
EGAF00008273040 fastq.gz 9.7 GB
EGAF00008273041 fastq.gz 1.3 GB
EGAF00008273042 fastq.gz 4.0 GB
EGAF00008273043 fastq.gz 9.7 GB
EGAF00008273044 fastq.gz 1.3 GB
EGAF00008273045 fastq.gz 4.0 GB
EGAF00008273046 fastq.gz 9.6 GB
EGAF00008273047 fastq.gz 1.3 GB
EGAF00008273048 fastq.gz 4.0 GB
EGAF00008273049 fastq.gz 9.7 GB
EGAF00008273050 fastq.gz 170.3 MB
EGAF00008273051 fastq.gz 491.6 MB
EGAF00008273052 fastq.gz 1.1 GB
EGAF00008273053 fastq.gz 171.7 MB
EGAF00008273054 fastq.gz 498.5 MB
EGAF00008273055 fastq.gz 1.1 GB
EGAF00008273056 fastq.gz 1.1 GB
EGAF00008273057 fastq.gz 3.2 GB
EGAF00008273058 fastq.gz 7.9 GB
EGAF00008273059 fastq.gz 1.0 GB
EGAF00008273060 fastq.gz 3.2 GB
EGAF00008273061 fastq.gz 7.8 GB
EGAF00008273062 fastq.gz 1.0 GB
EGAF00008273063 fastq.gz 3.2 GB
EGAF00008273064 fastq.gz 7.8 GB
EGAF00008273065 fastq.gz 1.0 GB
EGAF00008273066 fastq.gz 3.2 GB
EGAF00008273067 fastq.gz 7.8 GB
EGAF00008273068 fastq.gz 75.2 MB
EGAF00008273069 fastq.gz 209.7 MB
EGAF00008273070 fastq.gz 459.7 MB
EGAF00008273071 fastq.gz 75.6 MB
EGAF00008273072 fastq.gz 212.5 MB
EGAF00008273073 fastq.gz 464.4 MB
EGAF00008273074 fastq.gz 1.2 GB
EGAF00008273075 fastq.gz 3.9 GB
EGAF00008273076 fastq.gz 9.5 GB
EGAF00008273077 fastq.gz 1.2 GB
EGAF00008273078 fastq.gz 3.9 GB
EGAF00008273079 fastq.gz 9.5 GB
EGAF00008273080 fastq.gz 1.2 GB
EGAF00008273081 fastq.gz 3.8 GB
EGAF00008273082 fastq.gz 9.4 GB
EGAF00008273083 fastq.gz 1.2 GB
EGAF00008273084 fastq.gz 3.9 GB
EGAF00008273085 fastq.gz 9.5 GB
EGAF00008273086 fastq.gz 87.4 MB
EGAF00008273087 fastq.gz 238.7 MB
EGAF00008273088 fastq.gz 522.8 MB
EGAF00008273089 fastq.gz 88.5 MB
EGAF00008273090 fastq.gz 242.6 MB
EGAF00008273091 fastq.gz 530.5 MB
180 Files (617.9 GB)