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Somatic mutant selection is altered by prior NOTCH1 mutation in ageing esophageal epithelium

Authors: Charlotte King1, Emilie Abbie1, Joanna C. Fowler1, Irina Abnizova1, Roshan K. Sood1, Swee Hoe Ong1, Michael W. J. Hall1,2, Faye Lynch-Williams3, Benjamin A. Hall4, Philip H. Jones1,2,5 Abstract: In cancer evolution, genome alterations often occur in a specific order, implying selection depends on the prior clonal genotype 1-3. It is unknown if similar constraints operate in normal epithelia. Here, we mapped mutations in normal mid-esophagus of aged UK subjects. Mutant NOTCH1 clones colonized most of the epithelium by age 60 and above 70 tissue was saturated with mutants under strong competitive selection. Mutant TP53 was more strongly selected in donors over 60 years of age. Samples predominantly mutant for NOTCH1 showed increased selection of NOTCH2 mutants and weaker selection of mutant TP53 compared with samples that were mostly NOTCH1 wild type. In mouse esophagus lacking Notch1 we observed strong selection of mutant Notch2 and other genes not selected in wild type esophagus. In normal ageing esophagus, the first driver mutation may change the trajectory of subsequent somatic evolution by altering mutant selection.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001933 Other
EGAS00001005659 Other
EGAS00001005660 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008373287 cram 683.6 MB
EGAF00008373288 cram 657.8 MB
EGAF00008373289 cram 644.2 MB
EGAF00008373290 cram 625.0 MB
EGAF00008373291 cram 670.4 MB
EGAF00008373292 cram 622.9 MB
EGAF00008373293 cram 621.5 MB
EGAF00008373294 cram 598.0 MB
EGAF00008373295 cram 609.5 MB
EGAF00008373296 cram 635.7 MB
EGAF00008373297 cram 630.4 MB
EGAF00008373298 cram 604.6 MB
EGAF00008373299 cram 644.9 MB
EGAF00008373300 cram 579.5 MB
EGAF00008373301 cram 589.0 MB
EGAF00008373302 cram 702.2 MB
EGAF00008373303 cram 605.6 MB
EGAF00008373304 cram 632.3 MB
EGAF00008373305 cram 619.6 MB
EGAF00008373306 cram 627.1 MB
EGAF00008373307 cram 611.1 MB
EGAF00008373308 cram 594.9 MB
EGAF00008373309 cram 599.3 MB
EGAF00008373310 cram 538.5 MB
EGAF00008373311 cram 633.1 MB
EGAF00008373312 cram 572.2 MB
EGAF00008373313 cram 605.3 MB
EGAF00008373314 cram 650.3 MB
EGAF00008373315 cram 605.3 MB
EGAF00008373316 cram 571.3 MB
EGAF00008373317 cram 574.4 MB
EGAF00008373318 cram 613.8 MB
EGAF00008373319 cram 716.0 MB
EGAF00008373320 cram 779.9 MB
EGAF00008373321 cram 700.5 MB
EGAF00008373322 cram 773.7 MB
EGAF00008373323 cram 804.7 MB
EGAF00008373324 cram 710.4 MB
EGAF00008373325 cram 659.5 MB
EGAF00008373326 cram 637.4 MB
EGAF00008373327 cram 670.5 MB
EGAF00008373328 cram 693.3 MB
EGAF00008373329 cram 639.7 MB
EGAF00008373330 cram 716.1 MB
EGAF00008373331 cram 707.7 MB
EGAF00008373332 cram 675.1 MB
EGAF00008373333 cram 651.7 MB
EGAF00008373334 cram 751.3 MB
EGAF00008373335 cram 739.6 MB
EGAF00008373336 cram 752.9 MB
EGAF00008373337 cram 801.8 MB
EGAF00008373338 cram 754.0 MB
EGAF00008373339 cram 741.9 MB
EGAF00008373340 cram 765.5 MB
EGAF00008373341 cram 733.4 MB
EGAF00008373342 cram 710.9 MB
EGAF00008373343 cram 768.6 MB
EGAF00008373344 cram 713.6 MB
EGAF00008373345 cram 755.1 MB
EGAF00008373346 cram 762.1 MB
EGAF00008373347 cram 794.4 MB
EGAF00008373348 cram 677.5 MB
EGAF00008373349 cram 653.5 MB
EGAF00008373350 cram 708.2 MB
EGAF00008373351 cram 674.5 MB
EGAF00008373352 cram 690.8 MB
EGAF00008373353 cram 662.1 MB
EGAF00008373354 cram 707.4 MB
EGAF00008373355 cram 686.5 MB
EGAF00008373356 cram 679.1 MB
EGAF00008373357 cram 609.6 MB
EGAF00008373358 cram 625.3 MB
EGAF00008373359 cram 673.7 MB
EGAF00008373360 cram 656.7 MB
EGAF00008373361 cram 670.4 MB
EGAF00008373362 cram 674.6 MB
EGAF00008373363 cram 674.8 MB
EGAF00008373364 cram 573.2 MB
EGAF00008373365 cram 599.0 MB
EGAF00008373366 cram 682.4 MB
EGAF00008373368 cram 509.2 MB
EGAF00008373369 cram 501.3 MB
EGAF00008373370 cram 482.5 MB
EGAF00008373371 cram 513.4 MB
EGAF00008373372 cram 520.9 MB
EGAF00008373373 cram 530.9 MB
EGAF00008373374 cram 558.4 MB
EGAF00008373375 cram 500.3 MB
EGAF00008373376 cram 510.4 MB
EGAF00008373377 cram 470.6 MB
EGAF00008373378 cram 473.7 MB
EGAF00008373379 cram 497.6 MB
EGAF00008373380 cram 527.0 MB
EGAF00008373381 cram 529.2 MB
EGAF00008373382 cram 528.7 MB
EGAF00008373383 cram 490.0 MB
EGAF00008373384 cram 426.4 MB
EGAF00008373385 cram 419.2 MB
EGAF00008373386 cram 407.3 MB
EGAF00008373387 cram 434.9 MB
EGAF00008373388 cram 435.9 MB
EGAF00008373389 cram 472.8 MB
EGAF00008373390 cram 443.3 MB
EGAF00008373391 cram 425.3 MB
EGAF00008373392 cram 463.1 MB
EGAF00008373393 cram 436.7 MB
EGAF00008373394 cram 461.4 MB
EGAF00008373395 cram 462.0 MB
EGAF00008373396 cram 444.8 MB
EGAF00008373397 cram 444.5 MB
EGAF00008373398 cram 438.3 MB
EGAF00008373399 cram 444.7 MB
EGAF00008373400 cram 564.5 MB
EGAF00008373401 cram 639.1 MB
EGAF00008373402 cram 524.1 MB
EGAF00008373403 cram 587.2 MB
EGAF00008373404 cram 595.1 MB
EGAF00008373405 cram 573.3 MB
EGAF00008373406 cram 565.9 MB
EGAF00008373407 cram 554.5 MB
EGAF00008373408 cram 565.8 MB
EGAF00008373409 cram 561.6 MB
EGAF00008373410 cram 582.9 MB
EGAF00008373411 cram 556.2 MB
EGAF00008373412 cram 587.1 MB
EGAF00008373413 cram 562.3 MB
EGAF00008373414 cram 534.6 MB
EGAF00008373415 cram 572.0 MB
EGAF00008373416 cram 594.5 MB
EGAF00008373417 cram 598.1 MB
EGAF00008373418 cram 573.9 MB
EGAF00008373419 cram 618.7 MB
EGAF00008373420 cram 595.0 MB
EGAF00008373421 cram 603.0 MB
EGAF00008373422 cram 587.5 MB
EGAF00008373423 cram 614.6 MB
EGAF00008373424 cram 560.9 MB
EGAF00008373425 cram 606.5 MB
EGAF00008373426 cram 635.3 MB
EGAF00008373427 cram 567.2 MB
EGAF00008373428 cram 621.9 MB
EGAF00008373429 cram 620.1 MB
EGAF00008373430 cram 573.6 MB
EGAF00008373431 cram 627.8 MB
EGAF00008373432 cram 574.2 MB
EGAF00008373433 cram 569.0 MB
EGAF00008373434 cram 571.1 MB
EGAF00008373435 cram 623.5 MB
EGAF00008373436 cram 578.3 MB
EGAF00008373437 cram 578.8 MB
EGAF00008373438 cram 613.6 MB
EGAF00008373439 cram 569.1 MB
EGAF00008373440 cram 555.3 MB
EGAF00008373441 cram 594.6 MB
EGAF00008373442 cram 587.1 MB
EGAF00008373443 cram 644.7 MB
EGAF00008373444 cram 595.3 MB
EGAF00008373445 cram 557.0 MB
EGAF00008373446 cram 584.5 MB
EGAF00008373447 cram 591.5 MB
EGAF00008373448 cram 616.9 MB
EGAF00008373449 cram 555.4 MB
EGAF00008373450 cram 557.6 MB
EGAF00008373451 cram 591.5 MB
EGAF00008373452 cram 640.3 MB
EGAF00008373453 cram 569.2 MB
EGAF00008373454 cram 609.6 MB
EGAF00008373455 cram 574.2 MB
EGAF00008373456 cram 563.7 MB
EGAF00008373457 cram 579.4 MB
EGAF00008373458 cram 620.3 MB
EGAF00008373459 cram 611.6 MB
EGAF00008373460 cram 650.9 MB
EGAF00008373461 cram 638.6 MB
EGAF00008373462 cram 641.4 MB
EGAF00008373463 cram 595.6 MB
EGAF00008373464 cram 638.1 MB
EGAF00008373465 cram 641.1 MB
EGAF00008373466 cram 627.8 MB
EGAF00008373467 cram 641.9 MB
EGAF00008373468 cram 735.2 MB
EGAF00008373469 cram 724.4 MB
EGAF00008373470 cram 782.8 MB
EGAF00008373471 cram 689.6 MB
EGAF00008373472 cram 661.8 MB
EGAF00008373473 cram 622.3 MB
EGAF00008373474 cram 680.7 MB
EGAF00008373475 cram 674.8 MB
EGAF00008373476 cram 735.2 MB
EGAF00008373477 cram 735.9 MB
EGAF00008373478 cram 752.1 MB
EGAF00008373479 cram 681.2 MB
EGAF00008373480 cram 622.1 MB
EGAF00008373481 cram 692.1 MB
EGAF00008373482 cram 656.3 MB
EGAF00008373483 cram 672.4 MB
EGAF00008373484 cram 648.6 MB
EGAF00008373485 cram 720.5 MB
EGAF00008373486 cram 703.6 MB
EGAF00008373487 cram 760.2 MB
EGAF00008373488 cram 665.7 MB
EGAF00008373489 cram 620.8 MB
EGAF00008373490 cram 733.0 MB
EGAF00008373491 cram 677.3 MB
EGAF00008373492 cram 675.3 MB
EGAF00008373493 cram 729.2 MB
EGAF00008373494 cram 698.7 MB
EGAF00008373495 cram 731.9 MB
EGAF00008373496 cram 703.4 MB
EGAF00008373497 cram 706.2 MB
EGAF00008373498 cram 684.3 MB
EGAF00008373499 cram 706.5 MB
EGAF00008373500 cram 716.5 MB
EGAF00008373501 cram 717.7 MB
EGAF00008373502 cram 721.5 MB
EGAF00008373503 cram 734.0 MB
EGAF00008373504 cram 703.5 MB
EGAF00008373505 cram 675.0 MB
EGAF00008373506 cram 683.5 MB
EGAF00008373507 cram 694.8 MB
EGAF00008373508 cram 713.8 MB
EGAF00008373509 cram 727.4 MB
EGAF00008373510 cram 699.3 MB
EGAF00008373511 cram 773.2 MB
EGAF00008373512 cram 704.7 MB
EGAF00008373513 cram 693.0 MB
EGAF00008373514 cram 683.8 MB
EGAF00008373515 cram 681.2 MB
EGAF00008373516 cram 704.5 MB
EGAF00008373517 cram 729.1 MB
EGAF00008373518 cram 724.8 MB
EGAF00008373519 cram 738.1 MB
EGAF00008373520 cram 681.8 MB
EGAF00008373521 cram 657.5 MB
EGAF00008373522 cram 672.2 MB
EGAF00008373523 cram 674.7 MB
EGAF00008373524 cram 722.6 MB
EGAF00008373525 cram 761.1 MB
EGAF00008373526 cram 745.6 MB
EGAF00008373527 cram 708.7 MB
EGAF00008373528 cram 610.0 MB
EGAF00008373529 cram 635.3 MB
EGAF00008373530 cram 585.8 MB
EGAF00008373531 cram 640.8 MB
EGAF00008373532 cram 642.4 MB
EGAF00008373533 cram 637.2 MB
EGAF00008373534 cram 663.1 MB
EGAF00008373535 cram 704.0 MB
EGAF00008373536 cram 633.6 MB
EGAF00008373537 cram 608.0 MB
EGAF00008373538 cram 647.2 MB
EGAF00008373539 cram 654.9 MB
EGAF00008373540 cram 612.2 MB
EGAF00008373541 cram 620.4 MB
EGAF00008373542 cram 683.7 MB
EGAF00008373543 cram 621.5 MB
EGAF00008373544 cram 682.2 MB
EGAF00008373545 cram 718.3 MB
EGAF00008373546 cram 695.8 MB
EGAF00008373547 cram 754.5 MB
EGAF00008373548 cram 761.7 MB
EGAF00008373549 cram 752.1 MB
EGAF00008373550 cram 780.2 MB
EGAF00008373551 cram 720.9 MB
EGAF00008373552 cram 708.2 MB
EGAF00008373553 cram 675.2 MB
EGAF00008373554 cram 769.4 MB
EGAF00008373555 cram 783.1 MB
EGAF00008373556 cram 788.7 MB
EGAF00008373557 cram 788.3 MB
EGAF00008373558 cram 817.6 MB
EGAF00008373559 cram 761.8 MB
EGAF00008373560 cram 653.6 MB
EGAF00008373561 cram 633.2 MB
EGAF00008373562 cram 641.2 MB
EGAF00008373563 cram 624.2 MB
EGAF00008373564 cram 680.3 MB
EGAF00008373565 cram 643.7 MB
EGAF00008373566 cram 670.9 MB
EGAF00008373567 cram 670.2 MB
EGAF00008373568 cram 601.2 MB
EGAF00008373569 cram 596.0 MB
EGAF00008373570 cram 668.5 MB
EGAF00008373571 cram 709.2 MB
EGAF00008373572 cram 630.1 MB
EGAF00008373573 cram 638.3 MB
EGAF00008373574 cram 634.3 MB
EGAF00008373575 cram 634.2 MB
EGAF00008373576 cram 617.5 MB
EGAF00008373577 cram 606.4 MB
EGAF00008373578 cram 602.5 MB
EGAF00008373579 cram 641.7 MB
EGAF00008373580 cram 560.5 MB
EGAF00008373581 cram 653.0 MB
EGAF00008373582 cram 618.5 MB
EGAF00008373583 cram 620.1 MB
EGAF00008373584 cram 642.0 MB
EGAF00008373585 cram 542.4 MB
EGAF00008373586 cram 589.3 MB
EGAF00008373587 cram 596.0 MB
EGAF00008373588 cram 588.5 MB
EGAF00008373589 cram 625.2 MB
EGAF00008373590 cram 604.0 MB
EGAF00008373591 cram 649.2 MB
EGAF00008373592 cram 657.7 MB
EGAF00008373593 cram 644.2 MB
EGAF00008373594 cram 642.0 MB
EGAF00008373595 cram 657.8 MB
EGAF00008373596 cram 598.9 MB
EGAF00008373597 cram 614.3 MB
EGAF00008373598 cram 603.9 MB
EGAF00008373599 cram 625.3 MB
EGAF00008373600 cram 558.2 MB
EGAF00008373601 cram 609.8 MB
EGAF00008373602 cram 583.0 MB
EGAF00008373603 cram 618.4 MB
EGAF00008373604 cram 640.3 MB
EGAF00008373605 cram 652.7 MB
EGAF00008373606 cram 617.2 MB
EGAF00008373607 cram 635.0 MB
EGAF00008373608 cram 629.2 MB
EGAF00008373609 cram 710.1 MB
EGAF00008373610 cram 652.0 MB
EGAF00008373611 cram 614.7 MB
EGAF00008373612 cram 629.1 MB
EGAF00008373613 cram 642.0 MB
EGAF00008373614 cram 680.4 MB
EGAF00008373615 cram 644.2 MB
EGAF00008373616 cram 708.6 MB
EGAF00008373617 cram 627.6 MB
EGAF00008373618 cram 621.4 MB
EGAF00008373619 cram 579.4 MB
EGAF00008373620 cram 724.6 MB
EGAF00008373621 cram 714.2 MB
EGAF00008373622 cram 641.9 MB
EGAF00008373623 cram 680.7 MB
EGAF00008373624 cram 408.0 MB
EGAF00008373625 cram 415.0 MB
EGAF00008373626 cram 390.6 MB
EGAF00008373627 cram 423.5 MB
EGAF00008373628 cram 384.4 MB
EGAF00008373629 cram 378.7 MB
EGAF00008373630 cram 404.0 MB
EGAF00008373631 cram 394.3 MB
EGAF00008373632 cram 394.5 MB
EGAF00008373633 cram 373.8 MB
EGAF00008373634 cram 427.9 MB
EGAF00008373635 cram 396.2 MB
EGAF00008373636 cram 420.0 MB
EGAF00008373637 cram 431.8 MB
EGAF00008373638 cram 436.9 MB
EGAF00008373639 cram 407.4 MB
EGAF00008373640 cram 723.9 MB
EGAF00008373641 cram 671.5 MB
EGAF00008373642 cram 627.0 MB
EGAF00008373643 cram 674.3 MB
EGAF00008373644 cram 707.8 MB
EGAF00008373645 cram 690.5 MB
EGAF00008373646 cram 677.2 MB
EGAF00008373647 cram 654.8 MB
EGAF00008373648 cram 697.0 MB
EGAF00008373649 cram 628.8 MB
EGAF00008373650 cram 785.4 MB
EGAF00008373651 cram 639.9 MB
EGAF00008373652 cram 680.8 MB
EGAF00008373653 cram 745.0 MB
EGAF00008373654 cram 729.3 MB
EGAF00008373655 cram 699.8 MB
EGAF00008373656 cram 176.2 MB
EGAF00008373657 cram 182.4 MB
EGAF00008373658 cram 167.2 MB
EGAF00008373659 cram 176.1 MB
EGAF00008373660 cram 181.3 MB
EGAF00008373661 cram 192.4 MB
EGAF00008373662 cram 189.7 MB
EGAF00008373663 cram 188.0 MB
EGAF00008373664 cram 183.6 MB
EGAF00008373665 cram 173.9 MB
EGAF00008373666 cram 180.3 MB
EGAF00008373667 cram 185.1 MB
EGAF00008373668 cram 176.2 MB
EGAF00008373669 cram 178.8 MB
EGAF00008373670 cram 190.3 MB
EGAF00008373671 cram 171.8 MB
EGAF00008373672 cram 483.6 MB
EGAF00008373673 cram 484.8 MB
EGAF00008373674 cram 437.9 MB
EGAF00008373675 cram 460.6 MB
EGAF00008373676 cram 480.4 MB
EGAF00008373677 cram 486.6 MB
EGAF00008373678 cram 509.0 MB
EGAF00008373679 cram 479.4 MB
EGAF00008373680 cram 480.5 MB
EGAF00008373681 cram 445.8 MB
EGAF00008373682 cram 460.3 MB
EGAF00008373683 cram 473.4 MB
EGAF00008373684 cram 496.7 MB
EGAF00008373685 cram 484.6 MB
EGAF00008373686 cram 499.5 MB
EGAF00008373687 cram 495.9 MB
EGAF00008373688 cram 635.8 MB
EGAF00008373689 cram 639.8 MB
EGAF00008373690 cram 619.6 MB
EGAF00008373691 cram 614.6 MB
EGAF00008373692 cram 647.8 MB
EGAF00008373693 cram 666.2 MB
EGAF00008373694 cram 657.2 MB
EGAF00008373695 cram 662.4 MB
EGAF00008373696 cram 653.9 MB
EGAF00008373697 cram 601.7 MB
EGAF00008373698 cram 643.4 MB
EGAF00008373699 cram 673.6 MB
EGAF00008373700 cram 648.3 MB
EGAF00008373701 cram 643.0 MB
EGAF00008373702 cram 679.9 MB
EGAF00008373703 cram 656.9 MB
EGAF00008373704 cram 693.3 MB
EGAF00008373705 cram 728.3 MB
EGAF00008373706 cram 670.8 MB
EGAF00008373707 cram 628.7 MB
EGAF00008373708 cram 649.7 MB
EGAF00008373709 cram 685.3 MB
EGAF00008373710 cram 695.5 MB
EGAF00008373711 cram 691.7 MB
EGAF00008373712 cram 648.7 MB
EGAF00008373713 cram 598.5 MB
EGAF00008373714 cram 716.8 MB
EGAF00008373715 cram 646.1 MB
EGAF00008373716 cram 656.1 MB
EGAF00008373717 cram 653.4 MB
EGAF00008373718 cram 696.0 MB
EGAF00008373719 cram 647.7 MB
EGAF00008373720 cram 680.0 MB
EGAF00008373721 cram 719.6 MB
EGAF00008373722 cram 613.9 MB
EGAF00008373723 cram 716.6 MB
EGAF00008373724 cram 663.8 MB
EGAF00008373725 cram 753.9 MB
EGAF00008373726 cram 690.2 MB
EGAF00008373727 cram 618.0 MB
EGAF00008373728 cram 676.1 MB
EGAF00008373729 cram 643.8 MB
EGAF00008373730 cram 698.5 MB
EGAF00008373731 cram 635.6 MB
EGAF00008373732 cram 688.4 MB
EGAF00008373733 cram 670.1 MB
EGAF00008373734 cram 674.2 MB
EGAF00008373735 cram 718.1 MB
EGAF00008373736 cram 686.5 MB
EGAF00008373737 cram 711.2 MB
EGAF00008373738 cram 726.3 MB
EGAF00008373739 cram 700.4 MB
EGAF00008373740 cram 734.1 MB
EGAF00008373741 cram 688.7 MB
EGAF00008373742 cram 709.7 MB
EGAF00008373743 cram 714.5 MB
EGAF00008373744 cram 706.5 MB
EGAF00008373745 cram 649.7 MB
EGAF00008373746 cram 734.6 MB
EGAF00008373747 cram 683.0 MB
EGAF00008373748 cram 680.0 MB
EGAF00008373749 cram 686.5 MB
EGAF00008373750 cram 750.1 MB
EGAF00008373751 cram 784.2 MB
EGAF00008373752 cram 887.5 MB
EGAF00008373753 cram 856.3 MB
EGAF00008373754 cram 858.5 MB
EGAF00008373755 cram 837.6 MB
EGAF00008373756 cram 861.2 MB
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EGAF00008376158 cram 261.0 MB
EGAF00008376159 cram 253.0 MB
EGAF00008376160 cram 292.5 MB
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EGAF00008376162 cram 353.6 MB
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EGAF00008376169 cram 328.8 MB
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EGAF00008376171 cram 258.8 MB
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EGAF00008376175 cram 295.3 MB
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EGAF00008376177 cram 295.2 MB
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EGAF00008376179 cram 269.8 MB
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EGAF00008376185 cram 319.7 MB
EGAF00008376186 cram 268.0 MB
EGAF00008376187 cram 347.2 MB
EGAF00008376188 cram 279.0 MB
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EGAF00008376190 cram 315.7 MB
1822 Files (856.1 GB)