COVID-19 Multiomics Atlas
We provide a single-nuclei RNA-sequencing (snRNA-seq) dataset derived from four COVID-19 patients, generated using the 10x Chromium Next GEM Single Cell v3.1 kit. For our study, these were integrated with snRNA-seq data with 12 publicly available sc/snRNA-seq datasets, comprising organ donor lung samples (n=89) and COVID-19 lung tissue samples (n=51). Additionally, we provide a spatial transcriptomic dataset characterizing different histopathological stages of diffuse alveolar damage, across a cohort of 33 COVID-19 patients. This was generated using the Nanostring Whole Transcriptome Assay (WTA) with regions of interest (ROIs) sized 400 µm² each. This integrated multi-omics analysis of snRNA-seq, histology, and spatial transcriptomics data, is available for exploration and download via our web portal: https://covid19-multiomicatlas.cellgeni.sanger.ac.uk/.
- 4 samples
- DAC: EGAC00001000205
- Technology: Illumina NovaSeq 6000
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004441 | Other | |
| EGAS00001004442 | Other | |
| EGAS00001005817 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008575686 | cram | 1.1 GB | ||
| EGAF00008575687 | cram | 1.3 GB | ||
| EGAF00008575688 | cram | 1.7 GB | ||
| EGAF00008575689 | cram | 810.1 MB | ||
| EGAF00008575690 | cram | 846.2 MB | ||
| EGAF00008575691 | cram | 1.0 GB | ||
| EGAF00008575692 | cram | 1.3 GB | ||
| EGAF00008575693 | cram | 1.9 GB | ||
| EGAF00008575694 | cram | 1.5 GB | ||
| EGAF00008575695 | cram | 1.7 GB | ||
| EGAF00008575696 | cram | 489.7 MB | ||
| EGAF00008575697 | cram | 1.1 GB | ||
| EGAF00008575698 | cram | 520.1 MB | ||
| EGAF00008575699 | cram | 650.1 MB | ||
| EGAF00008575700 | cram | 810.7 MB | ||
| EGAF00008577232 | cram | 1.9 GB | ||
| EGAF00008577233 | cram | 6.8 GB | ||
| EGAF00008577234 | cram | 1.2 GB | ||
| EGAF00008577235 | cram | 405.1 MB | ||
| EGAF00008577236 | cram | 1.2 GB | ||
| EGAF00008577237 | cram | 1.7 GB | ||
| EGAF00008577238 | cram | 2.0 GB | ||
| EGAF00008577239 | cram | 1.6 GB | ||
| EGAF00008577240 | cram | 1.5 GB | ||
| EGAF00008577241 | cram | 3.8 GB | ||
| EGAF00008577242 | cram | 1.0 GB | ||
| EGAF00008577243 | cram | 1.4 GB | ||
| EGAF00008577244 | cram | 1.3 GB | ||
| EGAF00008577245 | cram | 2.1 GB | ||
| EGAF00008577246 | cram | 741.1 MB | ||
| EGAF00008577247 | cram | 1.1 GB | ||
| EGAF00008577248 | cram | 503.4 MB | ||
| EGAF00008577249 | cram | 605.2 MB | ||
| EGAF00008577250 | cram | 180.0 MB | ||
| EGAF00008577251 | cram | 587.4 MB | ||
| EGAF00008577252 | cram | 213.2 MB | ||
| EGAF00008577253 | cram | 542.2 MB | ||
| EGAF00008577254 | cram | 930.9 MB | ||
| EGAF00008577255 | cram | 1.0 GB | ||
| EGAF00008577256 | cram | 992.6 MB | ||
| EGAF00008577257 | cram | 1.3 GB | ||
| EGAF00008577258 | cram | 552.6 MB | ||
| EGAF00008577259 | cram | 604.0 MB | ||
| EGAF00008577260 | cram | 852.6 MB | ||
| EGAF00008577261 | cram | 724.5 MB | ||
| EGAF00008577262 | cram | 362.7 MB | ||
| EGAF00008577263 | cram | 543.8 MB | ||
| EGAF00008577264 | cram | 142.5 MB | ||
| EGAF00008577265 | cram | 158.5 MB | ||
| EGAF00008577266 | cram | 716.5 MB | ||
| EGAF00008577267 | cram | 1.6 GB | ||
| EGAF00008577268 | cram | 603.7 MB | ||
| EGAF00008577269 | cram | 474.0 MB | ||
| EGAF00008577270 | cram | 262.7 MB | ||
| EGAF00008577271 | cram | 637.5 MB | ||
| EGAF00008577272 | cram | 348.5 MB | ||
| EGAF00008577273 | cram | 993.3 MB | ||
| EGAF00008577274 | cram | 1.5 GB | ||
| EGAF00008577275 | cram | 908.4 MB | ||
| EGAF00008577276 | cram | 502.7 MB | ||
| EGAF00008577277 | cram | 375.9 MB | ||
| EGAF00008577278 | cram | 148.3 MB | ||
| EGAF00008577279 | cram | 357.3 MB | ||
| EGAF00008577280 | cram | 1.4 GB | ||
| EGAF00008577281 | cram | 342.4 MB | ||
| EGAF00008577282 | cram | 1.3 GB | ||
| EGAF00008577283 | cram | 935.2 MB | ||
| EGAF00008577284 | cram | 2.6 GB | ||
| EGAF00008577285 | cram | 1.1 GB | ||
| EGAF00008577286 | cram | 4.3 GB | ||
| EGAF00008577287 | cram | 621.2 MB | ||
| EGAF00008577288 | cram | 1.1 GB | ||
| EGAF00008577289 | cram | 646.3 MB | ||
| EGAF00008577290 | cram | 822.8 MB | ||
| EGAF00008577291 | cram | 343.8 MB | ||
| EGAF00008577292 | cram | 542.1 MB | ||
| EGAF00008577293 | cram | 1.0 GB | ||
| EGAF00008577294 | cram | 577.0 MB | ||
| EGAF00008577295 | cram | 346.9 MB | ||
| EGAF00008577296 | cram | 881.1 MB | ||
| EGAF00008577297 | cram | 804.4 MB | ||
| EGAF00008577298 | cram | 752.7 MB | ||
| EGAF00008577299 | cram | 544.8 MB | ||
| EGAF00008577300 | cram | 801.3 MB | ||
| EGAF00008577301 | cram | 965.7 MB | ||
| EGAF00008577302 | cram | 666.9 MB | ||
| EGAF00008577303 | cram | 301.9 MB | ||
| EGAF00008577304 | cram | 617.9 MB | ||
| EGAF00008577305 | cram | 2.5 GB | ||
| EGAF00008577306 | cram | 1.0 GB | ||
| EGAF00008577307 | cram | 513.8 MB | ||
| EGAF00008577308 | cram | 270.5 MB | ||
| EGAF00008577309 | cram | 879.8 MB | ||
| EGAF00008577310 | cram | 1.3 GB | ||
| EGAF00008577311 | cram | 1.0 GB | ||
| EGAF00008577312 | cram | 537.8 MB | ||
| EGAF00008577313 | cram | 887.0 MB | ||
| EGAF00008577314 | cram | 1.0 GB | ||
| EGAF00008577315 | cram | 909.6 MB | ||
| EGAF00008577316 | cram | 408.6 MB | ||
| EGAF00008577317 | cram | 905.2 MB | ||
| EGAF00008577318 | cram | 6.2 GB | ||
| EGAF00008577319 | cram | 1.4 GB | ||
| EGAF00008577320 | cram | 1.2 GB | ||
| EGAF00008577321 | cram | 205.8 MB | ||
| EGAF00008577322 | cram | 502.3 MB | ||
| EGAF00008577323 | cram | 51.7 MB | ||
| EGAF00008577324 | cram | 4.9 MB | ||
| EGAF00008577325 | cram | 31.9 MB | ||
| EGAF00008577326 | cram | 12.2 MB | ||
| EGAF00008577327 | cram | 54.7 MB | ||
| EGAF00008577328 | cram | 32.2 MB | ||
| EGAF00008577329 | cram | 185.9 MB | ||
| EGAF00008577330 | cram | 109.1 MB | ||
| EGAF00008577331 | cram | 207.1 MB | ||
| EGAF00008577332 | cram | 30.8 MB | ||
| EGAF00008577333 | cram | 127.9 MB | ||
| EGAF00008577334 | cram | 1.3 GB | ||
| EGAF00008577335 | cram | 40.9 MB | ||
| EGAF00008577336 | cram | 323.1 MB | ||
| EGAF00008577337 | cram | 258.9 MB | ||
| EGAF00008577338 | cram | 34.0 MB | ||
| EGAF00008577339 | cram | 3.4 GB | ||
| EGAF00008577340 | cram | 1.4 GB | ||
| EGAF00008577341 | cram | 2.1 GB | ||
| EGAF00008577342 | cram | 1.4 GB | ||
| EGAF00008577343 | cram | 930.6 MB | ||
| EGAF00008577344 | cram | 2.2 GB | ||
| EGAF00008577345 | cram | 1.4 GB | ||
| EGAF00008577346 | cram | 1.8 GB | ||
| EGAF00008577347 | cram | 958.3 MB | ||
| EGAF00008577348 | cram | 758.5 MB | ||
| EGAF00008577349 | cram | 1.5 GB | ||
| EGAF00008577350 | cram | 36.7 MB | ||
| EGAF00008577351 | cram | 2.4 GB | ||
| EGAF00008577352 | cram | 24.8 MB | ||
| EGAF00008577353 | cram | 1.8 GB | ||
| EGAF00008577354 | cram | 464.2 MB | ||
| EGAF00008577355 | cram | 230.4 MB | ||
| EGAF00008577356 | cram | 358.9 MB | ||
| EGAF00008577357 | cram | 549.0 MB | ||
| EGAF00008577358 | cram | 2.0 GB | ||
| EGAF00008577359 | cram | 1.3 GB | ||
| EGAF00008577360 | cram | 204.1 MB | ||
| EGAF00008577361 | cram | 838.6 MB | ||
| EGAF00008577362 | cram | 273.4 MB | ||
| EGAF00008577363 | cram | 926.1 MB | ||
| EGAF00008577364 | cram | 961.0 MB | ||
| EGAF00008577365 | cram | 1.3 GB | ||
| EGAF00008577366 | cram | 1.6 GB | ||
| EGAF00008577367 | cram | 434.0 MB | ||
| EGAF00008577368 | cram | 52.9 MB | ||
| EGAF00008577369 | cram | 202.7 MB | ||
| EGAF00008577370 | cram | 1.4 GB | ||
| EGAF00008577371 | cram | 1.1 GB | ||
| EGAF00008577372 | cram | 2.3 MB | ||
| EGAF00008577373 | cram | 1.1 GB | ||
| EGAF00008577374 | cram | 397.6 MB | ||
| EGAF00008577375 | cram | 860.6 MB | ||
| EGAF00008577376 | cram | 6.1 GB | ||
| EGAF00008577377 | cram | 2.9 GB | ||
| EGAF00008577378 | cram | 1.6 GB | ||
| EGAF00008577379 | cram | 2.5 GB | ||
| EGAF00008577380 | cram | 801.5 MB | ||
| EGAF00008577381 | cram | 1.2 GB | ||
| EGAF00008577382 | cram | 994.2 MB | ||
| EGAF00008577383 | cram | 2.4 GB | ||
| EGAF00008577384 | cram | 2.1 GB | ||
| EGAF00008577385 | cram | 1.7 GB | ||
| EGAF00008577386 | cram | 2.2 GB | ||
| EGAF00008577387 | cram | 370.4 MB | ||
| EGAF00008577388 | cram | 3.9 GB | ||
| EGAF00008577389 | cram | 3.2 GB | ||
| EGAF00008577390 | cram | 4.1 GB | ||
| EGAF00008577391 | cram | 3.0 GB | ||
| EGAF00008577392 | cram | 3.0 GB | ||
| EGAF00008577393 | cram | 3.5 GB | ||
| EGAF00008577394 | cram | 1.1 GB | ||
| EGAF00008577395 | cram | 2.1 GB | ||
| EGAF00008577396 | cram | 1.4 GB | ||
| EGAF00008577397 | cram | 948.7 MB | ||
| EGAF00008577398 | cram | 2.5 GB | ||
| EGAF00008577399 | cram | 1.2 GB | ||
| EGAF00008577400 | cram | 396.5 MB | ||
| EGAF00008577401 | cram | 1.4 GB | ||
| EGAF00008577402 | cram | 1.3 GB | ||
| EGAF00008577403 | cram | 1.6 GB | ||
| EGAF00008577404 | cram | 1.4 GB | ||
| EGAF00008577405 | cram | 1.6 GB | ||
| EGAF00008577406 | cram | 1.6 GB | ||
| EGAF00008577407 | cram | 479.9 MB | ||
| EGAF00008577408 | cram | 1.0 GB | ||
| EGAF00008577409 | cram | 267.1 MB | ||
| EGAF00008577410 | cram | 948.6 MB | ||
| EGAF00008577411 | cram | 1.5 GB | ||
| EGAF00008577412 | cram | 553.3 MB | ||
| EGAF00008577413 | cram | 323.6 MB | ||
| EGAF00008577414 | cram | 40.2 MB | ||
| EGAF00008577415 | cram | 2.1 GB | ||
| EGAF00008577416 | cram | 831.7 MB | ||
| EGAF00008577417 | cram | 365.0 MB | ||
| EGAF00008577418 | cram | 254.0 MB | ||
| EGAF00008577419 | cram | 1.5 GB | ||
| EGAF00008577420 | cram | 471.7 MB | ||
| EGAF00008577421 | cram | 390.2 MB | ||
| EGAF00008577422 | cram | 410.7 MB | ||
| EGAF00008577423 | cram | 36.9 MB | ||
| EGAF00008577424 | cram | 156.2 MB | ||
| EGAF00008577425 | cram | 98.7 MB | ||
| EGAF00008577426 | cram | 504.8 MB | ||
| EGAF00008577427 | cram | 1.2 GB | ||
| EGAF00008577428 | cram | 155.8 MB | ||
| EGAF00008577429 | cram | 183.9 MB | ||
| EGAF00008577430 | cram | 109.6 MB | ||
| EGAF00008577431 | cram | 83.8 MB | ||
| EGAF00008577432 | cram | 114.6 MB | ||
| EGAF00008577433 | cram | 335.2 MB | ||
| EGAF00008577434 | cram | 126.8 MB | ||
| EGAF00008577435 | cram | 302.3 MB | ||
| EGAF00008577436 | cram | 596.3 MB | ||
| EGAF00008577437 | cram | 344.2 MB | ||
| EGAF00008577438 | cram | 592.7 MB | ||
| EGAF00008577439 | cram | 219.4 MB | ||
| EGAF00008577440 | cram | 256.9 MB | ||
| EGAF00008577441 | cram | 113.0 MB | ||
| EGAF00008577442 | cram | 65.1 MB | ||
| EGAF00008577443 | cram | 434.5 MB | ||
| EGAF00008577444 | cram | 128.0 MB | ||
| EGAF00008577445 | cram | 417.7 MB | ||
| EGAF00008577446 | cram | 530.6 MB | ||
| EGAF00008577447 | cram | 316.3 MB | ||
| EGAF00008577448 | cram | 568.5 MB | ||
| EGAF00008577449 | cram | 399.2 MB | ||
| EGAF00008577450 | cram | 357.2 MB | ||
| EGAF00008577451 | cram | 382.3 MB | ||
| EGAF00008577452 | cram | 336.5 MB | ||
| EGAF00008577453 | cram | 2.7 GB | ||
| EGAF00008577454 | cram | 580.1 MB | ||
| EGAF00008577455 | cram | 1.9 GB | ||
| EGAF00008577456 | cram | 2.7 GB | ||
| EGAF00008577457 | cram | 506.9 MB | ||
| EGAF00008577458 | cram | 82.4 MB | ||
| EGAF00008577459 | cram | 511.5 MB | ||
| EGAF00008577460 | cram | 750.8 MB | ||
| EGAF00008577461 | cram | 592.7 MB | ||
| EGAF00008577462 | cram | 294.9 MB | ||
| EGAF00008577463 | cram | 404.5 MB | ||
| EGAF00008577464 | cram | 840.3 MB | ||
| EGAF00008577659 | cram | 1.6 GB | ||
| EGAF00008577660 | cram | 1.7 GB | ||
| EGAF00008577661 | cram | 2.4 GB | ||
| EGAF00008577662 | cram | 1.9 GB | ||
| EGAF00008577663 | cram | 1.9 GB | ||
| EGAF00008577664 | cram | 2.1 GB | ||
| EGAF00008577665 | cram | 1.6 GB | ||
| EGAF00008577666 | cram | 1.7 GB | ||
| EGAF00008577667 | cram | 1.7 GB | ||
| EGAF00008577668 | cram | 1.7 GB | ||
| EGAF00008577669 | cram | 2.5 GB | ||
| EGAF00008577670 | cram | 2.0 GB | ||
| EGAF00008577671 | cram | 1.9 GB | ||
| EGAF00008577672 | cram | 2.2 GB | ||
| EGAF00008577673 | cram | 1.6 GB | ||
| EGAF00008577674 | cram | 1.7 GB | ||
| EGAF00008577675 | cram | 9.0 GB | ||
| EGAF00008577676 | cram | 9.6 GB | ||
| EGAF00008577677 | cram | 4.8 GB | ||
| EGAF00008577678 | cram | 7.5 GB | ||
| EGAF00008577679 | cram | 9.2 GB | ||
| EGAF00008577680 | cram | 9.3 GB | ||
| EGAF00008577681 | cram | 9.0 GB | ||
| EGAF00008577682 | cram | 8.3 GB | ||
| 272 Files (348.0 GB) | ||||