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Sperm sequencing reveals extensive positive selection in the human germline -WGS

Mutations that occur during human ageing in the cell lineages of sperm or eggs have the potential to be transmitted to offspring. In males, positive selection of driver mutations during spermatogenesis is known to increase the birth prevalence of certain developmental disorders and cancer predisposition syndromes. However, direct observation of the scope of this selection in sperm has been limited by the error rates of sequencing technologies. Using the duplex sequencing method known as NanoSeq, we sequenced bulk sperm samples from individuals aged 24 to 75 years. Our findings revealed a linear accumulation mutations per year and mutational signatures consistent with pedigree studies. Deep targeted and deep exome NanoSeq of sperm samples identified genes subject to significant positive selection in the male germline, which are linked to diverse cellular pathways including RAS/MAPK and BMP signaling. Strikingly, nearly all positively selected genes are associated with developmental or cancer predisposition disorders in children. We find that this effect drives an elevated risk of known likely disease-causing mutations in sperm across a wide age range. This implies that the disorders attributed to these genes likely exhibit elevated birth prevalence in human populations, particularly among older fathers. These findings shed light on the dynamics of germline mutations and highlight an increased disease risk for children born to fathers of advanced age.

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”Pfizer-funded TwinsUK exome sequence data produced at BGI”

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006346 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00008729808 cram 24.8 GB
EGAF00008729809 cram 25.0 GB
EGAF00008729810 cram 19.8 GB
EGAF00008729811 cram 21.0 GB
EGAF00008729812 cram 19.7 GB
EGAF00008729813 cram 19.8 GB
EGAF00008729814 cram 20.1 GB
EGAF00008729815 cram 18.3 GB
EGAF00008729816 cram 26.3 GB
EGAF00008729817 cram 20.0 GB
EGAF00008729818 cram 23.1 GB
EGAF00008729819 cram 21.6 GB
EGAF00008729820 cram 19.1 GB
EGAF00008729821 cram 20.1 GB
EGAF00008729822 cram 17.8 GB
EGAF00008729823 cram 19.7 GB
EGAF00008729824 cram 24.1 GB
EGAF00008729825 cram 20.5 GB
EGAF00008729826 cram 22.2 GB
EGAF00008729827 cram 26.8 GB
EGAF00008729828 cram 22.8 GB
EGAF00008729829 cram 19.3 GB
EGAF00008729830 cram 18.7 GB
EGAF00008729831 cram 18.4 GB
EGAF00008729832 cram 29.7 GB
EGAF00008729833 cram 25.5 GB
EGAF00008729834 cram 30.8 GB
EGAF00008729835 cram 28.1 GB
EGAF00008729836 cram 21.8 GB
EGAF00008729837 cram 19.6 GB
EGAF00008729838 cram 21.3 GB
EGAF00008729839 cram 21.4 GB
EGAF00008729840 cram 20.6 GB
EGAF00008729841 cram 19.8 GB
EGAF00008729842 cram 23.0 GB
EGAF00008729843 cram 18.2 GB
EGAF00008729844 cram 21.1 GB
EGAF00008729845 cram 22.7 GB
EGAF00008729846 cram 19.4 GB
EGAF00008729847 cram 19.0 GB
EGAF00008729848 cram 23.9 GB
EGAF00008729849 cram 22.8 GB
EGAF00008729850 cram 19.3 GB
EGAF00008729851 cram 17.2 GB
EGAF00008729852 cram 22.7 GB
EGAF00008729853 cram 22.7 GB
EGAF00008729854 cram 19.1 GB
EGAF00008729855 cram 22.9 GB
EGAF00008729856 cram 22.0 GB
EGAF00008729857 cram 18.5 GB
EGAF00008729858 cram 23.8 GB
EGAF00008729859 cram 21.2 GB
EGAF00008729860 cram 19.1 GB
EGAF00008729861 cram 23.7 GB
EGAF00008729862 cram 21.3 GB
EGAF00008729863 cram 18.3 GB
EGAF00008729864 cram 28.5 GB
EGAF00008729865 cram 25.4 GB
EGAF00008729866 cram 21.1 GB
EGAF00008729867 cram 20.6 GB
EGAF00008729868 cram 26.0 GB
EGAF00008729869 cram 24.2 GB
EGAF00008729870 cram 28.9 GB
EGAF00008729871 cram 35.1 GB
EGAF00008729872 cram 22.7 GB
EGAF00008729873 cram 25.7 GB
EGAF00008729874 cram 25.5 GB
EGAF00008729875 cram 26.8 GB
EGAF00008729876 cram 26.4 GB
69 Files (1.5 TB)