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Single cell characterization of T-cell lymphoma: RNA (2025-07-31)

Lymphomas are types of blood cancer derived from lymphocytes, and can be classified into two main categories, Hodgkin's lymphomas (HL) and non-Hodgkin lymphomas (NHL). T-cell lymphoma is a type of NHL that develops from T lymphocytes and accounts for 10-15% of total NHL cases. As a rare disease, T-cell lymphoma is functionally, pathologically, and clinically complex and heterogeneous. The 2016 revision of the WHO classification has listed 29 subtypes of mature T/NK-cell neoplasms, among which over 25 are T lymphocyte in origin. These subtypes of T-cell lymphomas have different biological behaviours and clinical prognosis. Clinically, T-cell lymphoma ranges from indolent (slow-growing) to aggressive (fast-growing and spreading) disease. According to the guideline booklet provided by the Lymphoma Research Foundation (https://lymphoma.org/aboutlymphoma/nhl/), indolent T-cell lymphoma subtypes include adult T-cell leukaemia/lymphoma (ATLL), cutaneous T-cell lymphoma (CTCL), and mycosis fungoides (MF), while the aggressive subtypes include anaplastic large cell lymphoma (ALCL), angioimmunoblastic T-cell lymphoma (AITL), peripheral T-cell lymphoma (PTCL), and T lymphoblastic lymphoma (TLBL). PTCL and ALCL represent the most common subtypes of aggressive T-cell lymphoma whereas TLBL is a rare and aggressive subtype mostly diagnosed in children. In this study, we will use single cell RNA sequencing and single cell multiomic methods three aggressive T-cell lymphoma subtypes (ALCL, PTCL and TLBL) and try to gain a deeper insight into the genotypic and phenotypic features of these T-cell lymphomas. . This dataset contains all the data available for this study on 2025-07-31.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005750 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00008872564 cram 4.4 GB
EGAF00008872565 cram 4.4 GB
EGAF00008872566 cram 4.4 GB
EGAF00008872567 cram 8.9 GB
EGAF00008872568 cram 8.0 GB
EGAF00008872569 cram 9.7 GB
EGAF00008872570 cram 7.4 GB
EGAF00008872571 cram 9.7 GB
EGAF00008872572 cram 8.6 GB
EGAF00008872573 cram 7.8 GB
EGAF00008872574 cram 9.1 GB
EGAF00008872575 cram 8.5 GB
EGAF00008872576 cram 10.0 GB
EGAF00008872577 cram 7.6 GB
EGAF00008872578 cram 10.1 GB
EGAF00008872579 cram 8.8 GB
EGAF00008872580 cram 8.1 GB
EGAF00008872581 cram 9.1 GB
EGAF00008872582 cram 8.4 GB
EGAF00008872583 cram 9.9 GB
EGAF00008872584 cram 7.5 GB
EGAF00008872585 cram 10.1 GB
EGAF00008872586 cram 8.8 GB
EGAF00008872587 cram 8.1 GB
EGAF00008872588 cram 2.4 GB
EGAF00008872589 cram 2.3 GB
EGAF00008872590 cram 1.1 GB
EGAF00008872591 cram 2.6 GB
EGAF00008872592 cram 2.4 GB
EGAF00008872593 cram 2.4 GB
EGAF00008872594 cram 1.2 GB
EGAF00008872595 cram 2.6 GB
EGAF00008872596 cram 1.2 GB
EGAF00008872597 cram 2.0 GB
EGAF00008872598 cram 1.8 GB
EGAF00008872599 cram 1.9 GB
EGAF00008872600 cram 916.7 MB
EGAF00008872601 cram 1.7 GB
EGAF00008872602 cram 1.0 GB
EGAF00008872603 cram 1.2 GB
EGAF00008872604 cram 1.1 GB
EGAF00008872605 cram 899.8 MB
EGAF00008872606 cram 1.2 GB
EGAF00008872607 cram 1.4 GB
EGAF00008872608 cram 752.9 MB
EGAF00008872609 cram 580.3 MB
EGAF00008872610 cram 650.7 MB
EGAF00008872611 cram 582.5 MB
EGAF00008872612 cram 12.6 GB
EGAF00008872613 cram 10.5 GB
EGAF00008872614 cram 11.7 GB
EGAF00008872615 cram 9.5 GB
EGAF00008872616 cram 752.9 MB
EGAF00008872617 cram 579.0 MB
EGAF00008872618 cram 647.9 MB
EGAF00008872619 cram 582.2 MB
EGAF00008872620 cram 12.6 GB
EGAF00008872621 cram 10.5 GB
EGAF00008872622 cram 11.6 GB
EGAF00008872623 cram 9.6 GB
EGAF00008872624 cram 23.0 GB
EGAF00008872625 cram 26.4 GB
EGAF00008872626 cram 21.1 GB
EGAF00008872627 cram 26.1 GB
EGAF00008872628 cram 2.5 GB
EGAF00008872629 cram 1.7 GB
EGAF00008872630 cram 2.0 GB
EGAF00008872631 cram 2.2 GB
EGAF00008872632 cram 2.1 GB
EGAF00008872633 cram 2.3 GB
EGAF00008872634 cram 1.4 GB
EGAF00008872635 cram 1.5 GB
EGAF00008872636 cram 987.4 MB
EGAF00008872637 cram 1.4 GB
EGAF00008872638 cram 1.4 GB
EGAF00008872639 cram 2.3 GB
EGAF00008872640 cram 1.9 GB
EGAF00008872641 cram 2.2 GB
EGAF00008872642 cram 1.4 GB
EGAF00008872643 cram 1.6 GB
EGAF00008872644 cram 1.6 GB
EGAF00008872645 cram 46.0 MB
EGAF00008872646 cram 21.7 GB
EGAF00008872647 cram 20.9 GB
EGAF00008872648 cram 1.1 GB
EGAF00008872649 cram 882.2 MB
EGAF00008872650 cram 1.2 GB
EGAF00008872651 cram 1.0 GB
EGAF00008872652 cram 880.8 MB
EGAF00008872653 cram 911.0 MB
EGAF00008872654 cram 24.2 GB
EGAF00008872655 cram 24.2 GB
EGAF00008872656 cram 19.7 GB
EGAF00008872657 cram 22.4 GB
EGAF00008872658 cram 24.1 GB
EGAF00008872659 cram 21.7 GB
EGAF00008872660 cram 19.9 GB
EGAF00008872661 cram 588.0 MB
EGAF00008872662 cram 1.1 GB
EGAF00008872663 cram 1.2 GB
EGAF00008872664 cram 788.7 MB
EGAF00008872665 cram 996.5 MB
EGAF00008872666 cram 1.4 GB
EGAF00008872667 cram 857.6 MB
EGAF00008872668 cram 20.8 GB
EGAF00008872669 cram 15.2 GB
EGAF00008872670 cram 19.0 GB
EGAF00008872671 cram 21.8 GB
EGAF00008872672 cram 17.7 GB
EGAF00008872673 cram 18.2 GB
EGAF00008872674 cram 16.5 GB
EGAF00008872675 cram 1.1 GB
EGAF00008872676 cram 896.9 MB
EGAF00008872677 cram 1.1 GB
EGAF00008872678 cram 1.1 GB
EGAF00008872679 cram 1.1 GB
EGAF00008872680 cram 829.4 MB
EGAF00008872681 cram 18.3 GB
EGAF00008872682 cram 19.5 GB
EGAF00008872683 cram 2.5 GB
EGAF00008872684 cram 996.6 MB
EGAF00008872685 cram 1.5 GB
EGAF00008872686 cram 29.0 GB
EGAF00008872687 cram 30.3 GB
EGAF00008872688 cram 1.7 GB
EGAF00008872689 cram 27.3 GB
EGAF00008872690 cram 1.7 GB
EGAF00008872691 cram 2.3 GB
EGAF00008872692 cram 1.8 GB
EGAF00008872693 cram 2.0 GB
EGAF00008872694 cram 31.2 GB
EGAF00008872695 cram 26.4 GB
EGAF00008872696 cram 1.8 GB
EGAF00008872697 cram 1.6 GB
134 Files (998.0 GB)