Single cell characterization of T-cell lymphoma: RNA (2025-07-31)
Lymphomas are types of blood cancer derived from lymphocytes, and can be classified into two main categories, Hodgkin's lymphomas (HL) and non-Hodgkin lymphomas (NHL). T-cell lymphoma is a type of NHL that develops from T lymphocytes and accounts for 10-15% of total NHL cases. As a rare disease, T-cell lymphoma is functionally, pathologically, and clinically complex and heterogeneous. The 2016 revision of the WHO classification has listed 29 subtypes of mature T/NK-cell neoplasms, among which over 25 are T lymphocyte in origin. These subtypes of T-cell lymphomas have different biological behaviours and clinical prognosis. Clinically, T-cell lymphoma ranges from indolent (slow-growing) to aggressive (fast-growing and spreading) disease. According to the guideline booklet provided by the Lymphoma Research Foundation (https://lymphoma.org/aboutlymphoma/nhl/), indolent T-cell lymphoma subtypes include adult T-cell leukaemia/lymphoma (ATLL), cutaneous T-cell lymphoma (CTCL), and mycosis fungoides (MF), while the aggressive subtypes include anaplastic large cell lymphoma (ALCL), angioimmunoblastic T-cell lymphoma (AITL), peripheral T-cell lymphoma (PTCL), and T lymphoblastic lymphoma (TLBL). PTCL and ALCL represent the most common subtypes of aggressive T-cell lymphoma whereas TLBL is a rare and aggressive subtype mostly diagnosed in children. In this study, we will use single cell RNA sequencing and single cell multiomic methods three aggressive T-cell lymphoma subtypes (ALCL, PTCL and TLBL) and try to gain a deeper insight into the genotypic and phenotypic features of these T-cell lymphomas. . This dataset contains all the data available for this study on 2025-07-31.
- 31/07/2025
- 1 sample
- DAC: EGAC00001000205
- Technology: Illumina NovaSeq 6000
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005750 | Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF00008872564 | cram | 4.4 GB |
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| EGAF00008872565 | cram | 4.4 GB |
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| EGAF00008872566 | cram | 4.4 GB |
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| EGAF00008872567 | cram | 8.9 GB |
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| EGAF00008872568 | cram | 8.0 GB |
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| EGAF00008872569 | cram | 9.7 GB |
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| EGAF00008872570 | cram | 7.4 GB |
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| EGAF00008872571 | cram | 9.7 GB |
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| EGAF00008872572 | cram | 8.6 GB |
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| EGAF00008872573 | cram | 7.8 GB |
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| EGAF00008872574 | cram | 9.1 GB |
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| EGAF00008872575 | cram | 8.5 GB |
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| EGAF00008872576 | cram | 10.0 GB |
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| EGAF00008872577 | cram | 7.6 GB |
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| EGAF00008872578 | cram | 10.1 GB |
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| EGAF00008872579 | cram | 8.8 GB |
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| EGAF00008872580 | cram | 8.1 GB |
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| EGAF00008872581 | cram | 9.1 GB |
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| EGAF00008872582 | cram | 8.4 GB |
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| EGAF00008872583 | cram | 9.9 GB |
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| EGAF00008872584 | cram | 7.5 GB |
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| EGAF00008872585 | cram | 10.1 GB |
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| EGAF00008872586 | cram | 8.8 GB |
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| EGAF00008872587 | cram | 8.1 GB |
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| EGAF00008872588 | cram | 2.4 GB |
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| EGAF00008872589 | cram | 2.3 GB |
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| EGAF00008872590 | cram | 1.1 GB |
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| EGAF00008872591 | cram | 2.6 GB |
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| EGAF00008872592 | cram | 2.4 GB |
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| EGAF00008872593 | cram | 2.4 GB |
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| EGAF00008872594 | cram | 1.2 GB |
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| EGAF00008872595 | cram | 2.6 GB |
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| EGAF00008872596 | cram | 1.2 GB |
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| EGAF00008872597 | cram | 2.0 GB |
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| EGAF00008872598 | cram | 1.8 GB |
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| EGAF00008872599 | cram | 1.9 GB |
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| EGAF00008872600 | cram | 916.7 MB |
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| EGAF00008872601 | cram | 1.7 GB |
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| EGAF00008872602 | cram | 1.0 GB |
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| EGAF00008872603 | cram | 1.2 GB |
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| EGAF00008872604 | cram | 1.1 GB |
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| EGAF00008872605 | cram | 899.8 MB |
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| EGAF00008872606 | cram | 1.2 GB |
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| EGAF00008872607 | cram | 1.4 GB |
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| EGAF00008872608 | cram | 752.9 MB |
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| EGAF00008872609 | cram | 580.3 MB |
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| EGAF00008872610 | cram | 650.7 MB |
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| EGAF00008872611 | cram | 582.5 MB |
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| EGAF00008872612 | cram | 12.6 GB |
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| EGAF00008872613 | cram | 10.5 GB |
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| EGAF00008872614 | cram | 11.7 GB |
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| EGAF00008872615 | cram | 9.5 GB |
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| EGAF00008872616 | cram | 752.9 MB |
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| EGAF00008872617 | cram | 579.0 MB |
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| EGAF00008872618 | cram | 647.9 MB |
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| EGAF00008872619 | cram | 582.2 MB |
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| EGAF00008872620 | cram | 12.6 GB |
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| EGAF00008872621 | cram | 10.5 GB |
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| EGAF00008872622 | cram | 11.6 GB |
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| EGAF00008872623 | cram | 9.6 GB |
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| EGAF00008872624 | cram | 23.0 GB |
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| EGAF00008872625 | cram | 26.4 GB |
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| EGAF00008872626 | cram | 21.1 GB |
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| EGAF00008872627 | cram | 26.1 GB |
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| EGAF00008872628 | cram | 2.5 GB |
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| EGAF00008872629 | cram | 1.7 GB |
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| EGAF00008872630 | cram | 2.0 GB |
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| EGAF00008872631 | cram | 2.2 GB |
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| EGAF00008872632 | cram | 2.1 GB |
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| EGAF00008872633 | cram | 2.3 GB |
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| EGAF00008872634 | cram | 1.4 GB |
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| EGAF00008872635 | cram | 1.5 GB |
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| EGAF00008872636 | cram | 987.4 MB |
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| EGAF00008872637 | cram | 1.4 GB |
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| EGAF00008872638 | cram | 1.4 GB |
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| EGAF00008872639 | cram | 2.3 GB |
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| EGAF00008872640 | cram | 1.9 GB |
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| EGAF00008872641 | cram | 2.2 GB |
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| EGAF00008872642 | cram | 1.4 GB |
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| EGAF00008872643 | cram | 1.6 GB |
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| EGAF00008872644 | cram | 1.6 GB |
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| EGAF00008872645 | cram | 46.0 MB |
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| EGAF00008872646 | cram | 21.7 GB |
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| EGAF00008872647 | cram | 20.9 GB |
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| EGAF00008872648 | cram | 1.1 GB |
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| EGAF00008872649 | cram | 882.2 MB |
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| EGAF00008872650 | cram | 1.2 GB |
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| EGAF00008872651 | cram | 1.0 GB |
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| EGAF00008872652 | cram | 880.8 MB |
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| EGAF00008872653 | cram | 911.0 MB |
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| EGAF00008872654 | cram | 24.2 GB |
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| EGAF00008872655 | cram | 24.2 GB |
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| EGAF00008872656 | cram | 19.7 GB |
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| EGAF00008872657 | cram | 22.4 GB |
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| EGAF00008872658 | cram | 24.1 GB |
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| EGAF00008872659 | cram | 21.7 GB |
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| EGAF00008872660 | cram | 19.9 GB |
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| EGAF00008872661 | cram | 588.0 MB |
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| EGAF00008872662 | cram | 1.1 GB |
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| EGAF00008872663 | cram | 1.2 GB |
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| EGAF00008872664 | cram | 788.7 MB |
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| EGAF00008872665 | cram | 996.5 MB |
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| EGAF00008872666 | cram | 1.4 GB |
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| EGAF00008872667 | cram | 857.6 MB |
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| EGAF00008872668 | cram | 20.8 GB |
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| EGAF00008872669 | cram | 15.2 GB |
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| EGAF00008872670 | cram | 19.0 GB |
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| EGAF00008872671 | cram | 21.8 GB |
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| EGAF00008872672 | cram | 17.7 GB |
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| EGAF00008872673 | cram | 18.2 GB |
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| EGAF00008872674 | cram | 16.5 GB |
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| EGAF00008872675 | cram | 1.1 GB |
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| EGAF00008872676 | cram | 896.9 MB |
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| EGAF00008872677 | cram | 1.1 GB |
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| EGAF00008872678 | cram | 1.1 GB |
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| EGAF00008872679 | cram | 1.1 GB |
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| EGAF00008872680 | cram | 829.4 MB |
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| EGAF00008872681 | cram | 18.3 GB |
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| EGAF00008872682 | cram | 19.5 GB |
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| EGAF00008872683 | cram | 2.5 GB |
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| EGAF00008872684 | cram | 996.6 MB |
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| EGAF00008872685 | cram | 1.5 GB |
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| EGAF00008872686 | cram | 29.0 GB |
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| EGAF00008872687 | cram | 30.3 GB |
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| EGAF00008872688 | cram | 1.7 GB |
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| EGAF00008872689 | cram | 27.3 GB |
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| EGAF00008872690 | cram | 1.7 GB |
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| EGAF00008872691 | cram | 2.3 GB |
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| EGAF00008872692 | cram | 1.8 GB |
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| EGAF00008872693 | cram | 2.0 GB |
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| EGAF00008872694 | cram | 31.2 GB |
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| EGAF00008872695 | cram | 26.4 GB |
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| EGAF00008872696 | cram | 1.8 GB |
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| EGAF00008872697 | cram | 1.6 GB |
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| 134 Files (998.0 GB) | ||||
