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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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OMKar: optical map based automated karyotyping of genomes to identify constitutional disorders

This dataset contains optical genome mapping (OGM) data from 56 samples, processed for structural variation and copy number analysis. The data includes .xmap, .cmap, and .smap files representing high-resolution genome maps and structural variant calls. These samples were used to identify complex rearrangements and reconstruct genome karyotypes.

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OMKar Optical Genome Mapping Data Policy

This policy governs access to Bionano optical genome mapping data used in the OMKar study, submitted as part of the Genome Research manuscript. The data includes genome maps and structural variant calls from multiple cancer-related parental samples.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001008245 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008884958 xmap 14.0 MB
EGAF00008884959 smap 2.6 MB
EGAF00008884960 cmap 102.3 MB
EGAF00008884961 xmap 13.8 MB
EGAF00008884962 smap 1.1 MB
EGAF00008884963 cmap 95.5 MB
EGAF00008884964 xmap 14.4 MB
EGAF00008884965 smap 2.8 MB
EGAF00008884966 cmap 104.0 MB
EGAF00008884967 xmap 13.8 MB
EGAF00008884968 smap 1.1 MB
EGAF00008884969 cmap 95.5 MB
EGAF00008884970 xmap 13.9 MB
EGAF00008884971 smap 1.2 MB
EGAF00008884972 cmap 94.7 MB
EGAF00008884973 smap 1.1 MB
EGAF00008884974 xmap 13.9 MB
EGAF00008884975 cmap 95.6 MB
EGAF00008884976 xmap 13.9 MB
EGAF00008884977 smap 1.1 MB
EGAF00008884978 cmap 95.8 MB
EGAF00008884981 xmap 13.8 MB
EGAF00008884982 smap 1.1 MB
EGAF00008884984 cmap 95.3 MB
EGAF00008884985 xmap 14.1 MB
EGAF00008884986 smap 2.7 MB
EGAF00008884987 cmap 103.5 MB
EGAF00008884988 xmap 14.0 MB
EGAF00008884989 smap 2.7 MB
EGAF00008884990 cmap 103.1 MB
EGAF00008884991 xmap 13.8 MB
EGAF00008884992 smap 1.2 MB
EGAF00008884993 cmap 95.6 MB
EGAF00008884994 xmap 13.8 MB
EGAF00008884995 smap 1.1 MB
EGAF00008884996 cmap 95.1 MB
EGAF00008884997 xmap 13.7 MB
EGAF00008884998 smap 1.1 MB
EGAF00008884999 cmap 95.0 MB
EGAF00008885000 xmap 13.9 MB
EGAF00008885001 smap 1.2 MB
EGAF00008885002 cmap 95.8 MB
EGAF00008885003 xmap 13.9 MB
EGAF00008885004 smap 2.8 MB
EGAF00008885005 cmap 101.1 MB
EGAF00008885006 xmap 13.9 MB
EGAF00008885007 smap 2.6 MB
EGAF00008885008 cmap 105.0 MB
EGAF00008885009 xmap 14.0 MB
EGAF00008885010 smap 2.6 MB
EGAF00008885011 cmap 103.8 MB
EGAF00008885012 xmap 14.0 MB
EGAF00008885013 smap 2.6 MB
EGAF00008885014 cmap 104.8 MB
EGAF00008885015 xmap 14.0 MB
EGAF00008885016 smap 2.9 MB
EGAF00008885017 cmap 102.1 MB
EGAF00008885018 xmap 13.9 MB
EGAF00008885019 smap 2.9 MB
EGAF00008885020 cmap 101.5 MB
EGAF00008885021 xmap 13.8 MB
EGAF00008885022 smap 1.1 MB
EGAF00008885023 smap 1.1 MB
EGAF00008885024 cmap 95.3 MB
EGAF00008885025 xmap 13.8 MB
EGAF00008885026 cmap 95.1 MB
EGAF00008885027 xmap 13.8 MB
EGAF00008885028 smap 1.1 MB
EGAF00008885029 cmap 95.4 MB
EGAF00008885030 xmap 13.6 MB
EGAF00008885031 smap 2.8 MB
EGAF00008885032 cmap 100.3 MB
EGAF00008885033 xmap 13.8 MB
EGAF00008885034 smap 2.8 MB
EGAF00008885035 cmap 99.7 MB
EGAF00008885036 xmap 13.9 MB
EGAF00008885037 smap 1.2 MB
EGAF00008885038 cmap 95.9 MB
EGAF00008885039 smap 1.2 MB
EGAF00008885040 xmap 13.8 MB
EGAF00008885041 cmap 95.1 MB
EGAF00008885042 xmap 13.8 MB
EGAF00008885043 smap 1.1 MB
EGAF00008885044 cmap 94.5 MB
EGAF00008885045 xmap 13.9 MB
EGAF00008885046 smap 1.2 MB
EGAF00008885047 cmap 94.9 MB
EGAF00008885048 xmap 13.9 MB
EGAF00008885049 smap 1.1 MB
EGAF00008885050 cmap 95.8 MB
EGAF00008885051 xmap 14.0 MB
EGAF00008885052 smap 2.9 MB
EGAF00008885053 cmap 101.3 MB
EGAF00008885054 xmap 13.9 MB
EGAF00008885055 smap 2.7 MB
EGAF00008885056 cmap 102.0 MB
EGAF00008885057 xmap 13.9 MB
EGAF00008885058 smap 2.5 MB
EGAF00008885059 cmap 104.9 MB
EGAF00008885060 xmap 13.8 MB
EGAF00008885061 smap 1.1 MB
EGAF00008885062 cmap 95.1 MB
EGAF00008885063 xmap 13.8 MB
EGAF00008885064 smap 1.2 MB
EGAF00008885065 cmap 96.3 MB
EGAF00008885066 xmap 13.8 MB
EGAF00008885067 smap 2.5 MB
EGAF00008885068 cmap 101.6 MB
EGAF00008885069 xmap 13.9 MB
EGAF00008885070 smap 2.5 MB
EGAF00008885071 cmap 102.4 MB
EGAF00008885072 xmap 13.9 MB
EGAF00008885073 smap 2.8 MB
EGAF00008885074 cmap 101.3 MB
EGAF00008885075 xmap 14.0 MB
EGAF00008885076 smap 2.9 MB
EGAF00008885077 cmap 102.4 MB
EGAF00008885078 xmap 14.0 MB
EGAF00008885079 smap 2.8 MB
EGAF00008885080 cmap 102.0 MB
EGAF00008885081 xmap 14.1 MB
EGAF00008885082 smap 2.6 MB
EGAF00008885083 cmap 102.3 MB
EGAF00008885084 xmap 13.9 MB
EGAF00008885085 smap 2.6 MB
EGAF00008885086 cmap 103.7 MB
EGAF00008885087 xmap 13.9 MB
EGAF00008885088 smap 2.6 MB
EGAF00008885089 cmap 104.7 MB
EGAF00008885090 xmap 13.8 MB
EGAF00008885091 smap 1.2 MB
EGAF00008885092 cmap 95.4 MB
EGAF00008885093 xmap 13.9 MB
EGAF00008885094 smap 1.2 MB
EGAF00008885095 cmap 95.5 MB
EGAF00008885096 xmap 13.8 MB
EGAF00008885097 smap 2.7 MB
EGAF00008885098 cmap 101.1 MB
EGAF00008885099 xmap 14.0 MB
EGAF00008885100 smap 2.8 MB
EGAF00008885101 cmap 101.6 MB
EGAF00008885102 xmap 13.8 MB
EGAF00008885103 smap 1.1 MB
EGAF00008885104 cmap 94.9 MB
EGAF00008885105 xmap 13.8 MB
EGAF00008885106 smap 1.1 MB
EGAF00008885107 cmap 96.2 MB
EGAF00008885108 xmap 13.7 MB
EGAF00008885109 smap 2.5 MB
EGAF00008885110 cmap 105.5 MB
EGAF00008885111 xmap 14.1 MB
EGAF00008885112 smap 2.9 MB
EGAF00008885113 cmap 101.7 MB
EGAF00008885114 xmap 13.9 MB
EGAF00008885115 smap 2.8 MB
EGAF00008885116 cmap 101.3 MB
EGAF00008885117 xmap 14.0 MB
EGAF00008885118 smap 2.9 MB
EGAF00008885119 cmap 102.0 MB
EGAF00008885120 xmap 13.8 MB
EGAF00008885121 smap 2.6 MB
EGAF00008885122 cmap 102.2 MB
EGAF00008885123 xmap 13.9 MB
EGAF00008885124 smap 2.6 MB
EGAF00008885125 cmap 102.9 MB
165 Files (6.3 GB)