5 scRNA-seq with TCR Enrichment of Tumour-Involved Lymph Nodes, Malignant Seromas and Patient-Derived Xenografts from 18 T-Cell Lymphoma Patients
This raw data contains 5' scRNA-seq with TCR enrichment data from 18 individual patients analysing cells taken from tumour-involved lymph nodes (LN), malignant seromas and patient-derived xenografts (PDX) including systemic/nodal ALK+ ALCL (n=3 PDX), BIA-ALCL (n=2 seromas), PTCL-NOS (n=5 nodal tumours), nodal T follicular helper lymphoma - angioimmunoblastic type (nTFHL-AI) (n=1), nTFHL, not otherwise specified (nTFHL, NOS, n=1), TLBL (n=5) and 1 case of Sezary Syndrome (SS, cutaneous tumour). Droplet-based 5’ scRNA-seq with TCR enrichment (10x Chromium platform) was performed for all live cells, or the viable CD45+CD3- and CD45+CD3+ fractions following cell sorting by flow cytometry.
- 18/09/2025
- 1 sample
- DAC: EGAC00001000205
- Technology: Illumina NovaSeq 6000
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005750 | Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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| EGAF00008872567 | cram | 8.9 GB |
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| EGAF00008872568 | cram | 8.0 GB |
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| EGAF00008872569 | cram | 9.7 GB |
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| EGAF00008872570 | cram | 7.4 GB |
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| EGAF00008872571 | cram | 9.7 GB |
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| EGAF00008872572 | cram | 8.6 GB |
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| EGAF00008872573 | cram | 7.8 GB |
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| EGAF00008872574 | cram | 9.1 GB |
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| EGAF00008872575 | cram | 8.5 GB |
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| EGAF00008872576 | cram | 10.0 GB |
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| EGAF00008872577 | cram | 7.6 GB |
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| EGAF00008872578 | cram | 10.1 GB |
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| EGAF00008872579 | cram | 8.8 GB |
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| EGAF00008872580 | cram | 8.1 GB |
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| EGAF00008872581 | cram | 9.1 GB |
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| EGAF00008872582 | cram | 8.4 GB |
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| EGAF00008872583 | cram | 9.9 GB |
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| EGAF00008872584 | cram | 7.5 GB |
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| EGAF00008872585 | cram | 10.1 GB |
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| EGAF00008872586 | cram | 8.8 GB |
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| EGAF00008872587 | cram | 8.1 GB |
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| EGAF00008872596 | cram | 1.2 GB |
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| EGAF00008872597 | cram | 2.0 GB |
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| EGAF00008872598 | cram | 1.8 GB |
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| EGAF00008872599 | cram | 1.9 GB |
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| EGAF00008872608 | cram | 752.9 MB |
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| EGAF00008872609 | cram | 580.3 MB |
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| EGAF00008872610 | cram | 650.7 MB |
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| EGAF00008872611 | cram | 582.5 MB |
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| EGAF00008872612 | cram | 12.6 GB |
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| EGAF00008872613 | cram | 10.5 GB |
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| EGAF00008872614 | cram | 11.7 GB |
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| EGAF00008872615 | cram | 9.5 GB |
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| EGAF00008872616 | cram | 752.9 MB |
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| EGAF00008872617 | cram | 579.0 MB |
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| EGAF00008872618 | cram | 647.9 MB |
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| EGAF00008872619 | cram | 582.2 MB |
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| EGAF00008872620 | cram | 12.6 GB |
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| EGAF00008872621 | cram | 10.5 GB |
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| EGAF00008872622 | cram | 11.6 GB |
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| EGAF00008872623 | cram | 9.6 GB |
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| EGAF00008872648 | cram | 1.1 GB |
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| EGAF00008872653 | cram | 911.0 MB |
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| EGAF00008872658 | cram | 24.1 GB |
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| EGAF00008872659 | cram | 21.7 GB |
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| EGAF00008872660 | cram | 19.9 GB |
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| EGAF00008872668 | cram | 20.8 GB |
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| EGAF00008872669 | cram | 15.2 GB |
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| EGAF00008872670 | cram | 19.0 GB |
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| EGAF00008872671 | cram | 21.8 GB |
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| EGAF00008872672 | cram | 17.7 GB |
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| EGAF00008872673 | cram | 18.2 GB |
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| EGAF00008872674 | cram | 16.5 GB |
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| EGAF00008872676 | cram | 896.9 MB |
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| EGAF00008872677 | cram | 1.1 GB |
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| EGAF00008872678 | cram | 1.1 GB |
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| EGAF00008872679 | cram | 1.1 GB |
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| EGAF00008872680 | cram | 829.4 MB |
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| EGAF00008872681 | cram | 18.3 GB |
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| EGAF00008872682 | cram | 19.5 GB |
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| EGAF00008872685 | cram | 1.5 GB |
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| EGAF00008872686 | cram | 29.0 GB |
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| EGAF00008872687 | cram | 30.3 GB |
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| EGAF00008872688 | cram | 1.7 GB |
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| EGAF00008872689 | cram | 27.3 GB |
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| EGAF00008872690 | cram | 1.7 GB |
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| EGAF00008872694 | cram | 31.2 GB |
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| EGAF00008872695 | cram | 26.4 GB |
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| EGAF00008872696 | cram | 1.8 GB |
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| EGAF00008872697 | cram | 1.6 GB |
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| 70 Files (677.0 GB) | ||||