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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Ribo-Seq dataset of Targeting the dark proteome to expand the lineage-retained antigen landscape in neuroblastoma

This dataset contains ribosome profiling (Ribo-seq) data generated to map actively translated open reading frames, including non-canonical ORFs from the "dark proteome", in neuroblastoma, supporting the identification of translation-validated tumor antigens. Ribosome-protected mRNA fragments (~28–30 nt) were isolated from 47 neuroblastoma samples comprising cell lines, patient-derived tumoroids, and primary patient tumors spanning the adrenergic (ADRN) and mesenchymal (MES) lineage states. Libraries were prepared following a modified version of the McGlincy & Ingolia 2017 protocol and sequenced single-end (1x50 bp) on the Illumina NextSeq 2000 platform. Raw data are provided as single-end fastq.gz

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DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO_0006517

Data Access Agreement of data controlled by the Data Access Commitee of the Princess Maxima Center for Pediatric Oncology

The Princess Maxima Center for pediatric oncology default access policy to enable re-production of research and re-use of data for scientific purposes. Please contact the DAC (EGAC00001001864) for the most up to date policies.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001008445 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00009042002 fastq.gz 359.2 MB
EGAF00009042003 fastq.gz 1.1 GB
EGAF00009042004 fastq.gz 1.0 GB
EGAF00009042005 fastq.gz 1.4 GB
EGAF00009042006 fastq.gz 1.9 GB
EGAF00009042007 fastq.gz 1.3 GB
EGAF00009042008 fastq.gz 1.4 GB
EGAF00009042009 fastq.gz 1.2 GB
EGAF00009042010 fastq.gz 1.4 GB
EGAF00009042011 fastq.gz 1.4 GB
EGAF00009042012 fastq.gz 1.5 GB
EGAF00009042013 fastq.gz 1.3 GB
EGAF00009042014 fastq.gz 1.5 GB
EGAF00009042015 fastq.gz 1.5 GB
EGAF00009042016 fastq.gz 2.0 GB
EGAF00009042017 fastq.gz 1.3 GB
EGAF00009042018 fastq.gz 831.9 MB
EGAF00009042019 fastq.gz 1.2 GB
EGAF00009042020 fastq.gz 3.8 GB
EGAF00009042021 fastq.gz 1.2 GB
EGAF00009042022 fastq.gz 1.2 GB
EGAF00009042023 fastq.gz 1.0 GB
EGAF00009042024 fastq.gz 1.1 GB
EGAF00009042025 fastq.gz 4.8 GB
EGAF00009042026 fastq.gz 4.0 GB
EGAF00009042027 fastq.gz 4.4 GB
EGAF00009042028 fastq.gz 4.3 GB
EGAF00009042029 fastq.gz 5.3 GB
EGAF00009042030 fastq.gz 1.1 GB
EGAF00009042031 fastq.gz 5.8 GB
EGAF00009042032 fastq.gz 5.8 GB
EGAF00009042033 fastq.gz 1.3 GB
EGAF00009042035 fastq.gz 5.1 GB
EGAF00009042036 fastq.gz 897.1 MB
EGAF00009042038 fastq.gz 6.3 GB
EGAF00009042039 fastq.gz 4.3 GB
EGAF00009042040 fastq.gz 884.0 MB
EGAF00009042041 fastq.gz 2.5 GB
EGAF00009042042 fastq.gz 852.9 MB
EGAF00009042044 fastq.gz 918.2 MB
EGAF00009042045 fastq.gz 4.5 GB
EGAF00009042046 fastq.gz 853.9 MB
EGAF00009042051 fastq.gz 1.3 GB
EGAF00009042055 fastq.gz 10.1 GB
EGAF00009042059 fastq.gz 12.7 GB
EGAF00009042063 fastq.gz 4.8 GB
EGAF00009042069 fastq.gz 1.2 GB
47 Files (126.0 GB)