RNA-Seq dataset of Targeting the dark proteome to expand the lineage-retained antigen landscape in neuroblastoma

04/05/2026
82 samples
DAC: EGAC00001001864
Technologies: Illumina NovaSeq 6000, NextSeq 2000

Access Policy5 Studies Files

Metadata

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO_0006517

Data Access Agreement of data controlled by the Data Access Commitee of the Princess Maxima Center for Pediatric Oncology

The Princess Maxima Center for pediatric oncology default access policy to enable re-production of research and re-use of data for scientific purposes. Please contact the DAC (EGAC00001001864) for the most up to date policies.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001005312	Genomic Rearrangements in Pediatric Cancer	Other
EGAS00001006723	Deconvolution of bulk RNA-Seq using single cell RNA-Seq	Other
EGAS00001007099	Implementation of pediatric precision oncology into clinical practice: The individualized Therapies for Children with cancer program “iTHER”	Other
EGAS00001007160	Exploring high-throughput drug sensitivity testing in neuroblastoma cell lines and patient-derived tumor organoids in the era of precision medicine	Other
EGAS00001008445	Targeting the dark proteome to expand the lineage-retained antigen landscape in neuroblastoma	Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00005299831	cram	8.0 GB
EGAF00005299838	cram	8.2 GB
EGAF00005299866	cram	7.8 GB
EGAF00005299875	cram	14.9 GB
EGAF00005299887	cram	5.8 GB
EGAF00005299934	cram	5.9 GB
EGAF00009042034	fastq.gz	3.9 GB
EGAF00009042037	fastq.gz	4.0 GB
EGAF00009042043	fastq.gz	5.0 GB
EGAF00009042047	fastq.gz	3.4 GB
EGAF00009042048	fastq.gz	3.9 GB
EGAF00009042049	fastq.gz	4.3 GB
EGAF00009042050	fastq.gz	4.4 GB
EGAF00009042052	fastq.gz	4.4 GB
EGAF00009042053	fastq.gz	3.7 GB
EGAF00009042054	fastq.gz	5.0 GB
EGAF00009042056	fastq.gz	5.8 GB
EGAF00009042057	fastq.gz	4.9 GB
EGAF00009042058	fastq.gz	3.8 GB
EGAF00009042060	fastq.gz	5.5 GB
EGAF00009042061	fastq.gz	4.6 GB
EGAF00009042062	fastq.gz	3.7 GB
EGAF00009042064	fastq.gz	5.7 GB
EGAF00009042065	fastq.gz	3.4 GB
EGAF00009042067	fastq.gz	4.4 GB
EGAF00009042068	fastq.gz	4.6 GB
EGAF00009042071	cram	6.1 GB
EGAF00009042072	fastq.gz	5.7 GB
EGAF00009042073	fastq.gz	4.2 GB
EGAF00009042074	fastq.gz	4.5 GB
EGAF00009042075	fastq.gz	4.9 GB
EGAF00009042078	fastq.gz	4.7 GB
EGAF00009042079	fastq.gz	5.6 GB
EGAF00009042080	fastq.gz	4.9 GB
EGAF00009042081	cram	9.2 GB
EGAF00009042082	fastq.gz	4.4 GB
EGAF00009042084	cram	5.3 GB
EGAF00009042085	fastq.gz	4.2 GB
EGAF00009042086	fastq.gz	5.0 GB
EGAF00009042088	fastq.gz	4.5 GB
EGAF00009042089	fastq.gz	3.7 GB
EGAF00009042090	fastq.gz	4.3 GB
EGAF00009042091	cram	6.1 GB
EGAF00009042092	cram	6.0 GB
EGAF00009042093	cram	5.9 GB
EGAF00009042094	fastq.gz	4.3 GB
EGAF00009042095	fastq.gz	4.3 GB
EGAF00009042096	cram	6.2 GB
EGAF00009042097	fastq.gz	4.1 GB
EGAF00009042098	fastq.gz	4.8 GB
EGAF00009042100	cram	5.3 GB
EGAF00009042101	fastq.gz	3.7 GB
EGAF00009042103	cram	7.7 GB
EGAF00009042104	cram	5.8 GB
EGAF00009042105	fastq.gz	4.9 GB
EGAF00009042106	cram	7.3 GB
EGAF00009042107	fastq.gz	4.8 GB
EGAF00009042108	cram	6.1 GB
EGAF00009042109	fastq.gz	4.7 GB
EGAF00009042110	cram	7.5 GB
EGAF00009042111	fastq.gz	5.6 GB
EGAF00009042112	cram	6.5 GB
EGAF00009042113	cram	5.0 GB
EGAF00009042114	cram	9.4 GB
EGAF00009042115	cram	8.9 GB
EGAF00009042116	cram	4.2 GB
EGAF00009042118	cram	4.9 GB
EGAF00009042121	fastq.gz	4.0 GB
EGAF00009042122	cram	3.3 GB
EGAF00009042123	fastq.gz	5.0 GB
EGAF00009042124	fastq.gz	5.0 GB
EGAF00009042125	fastq.gz	3.7 GB
EGAF00009042126	fastq.gz	4.3 GB
EGAF00009042127	cram	5.2 GB
EGAF00009042128	cram	4.5 GB
EGAF00009042129	cram	6.5 GB
EGAF00009042130	cram	5.7 GB
EGAF00009042131	cram	5.7 GB
EGAF00009042132	cram	6.4 GB
EGAF00009042133	cram	7.7 GB
EGAF00009042134	cram	4.8 GB
EGAF00009042135	cram	6.8 GB
EGAF00009042136	fastq.gz	4.3 GB
EGAF00009042137	cram	8.2 GB
EGAF00009042138	fastq.gz	4.0 GB
EGAF00009042140	fastq.gz	4.0 GB
EGAF00009042141	fastq.gz	8.2 GB
EGAF00009042142	cram	5.7 GB
EGAF00009042143	cram	12.8 GB
EGAF00009042144	fastq.gz	4.1 GB
EGAF00009042145	cram	5.0 GB
EGAF00009042146	cram	7.2 GB
EGAF00009042147	cram	3.8 GB
EGAF00009042149	cram	6.1 GB
EGAF00009042150	cram	4.4 GB
EGAF00009042151	cram	6.3 GB
EGAF00009042152	cram	8.8 GB
EGAF00009042153	cram	7.3 GB
EGAF00009042154	fastq.gz	4.5 GB
EGAF00009042155	cram	7.1 GB
EGAF00009042157	cram	13.9 GB
EGAF00009042159	fastq.gz	6.8 GB
EGAF00009042160	cram	8.1 GB
EGAF00009042161	fastq.gz	4.8 GB
EGAF00009042162	cram	7.7 GB
EGAF00009042163	cram	6.5 GB
EGAF00009042164	cram	6.1 GB
EGAF00009042165	cram	5.0 GB
EGAF00009042166	cram	5.9 GB
EGAF00009042167	cram	5.2 GB
EGAF00009042168	cram	6.7 GB
EGAF00009042169	fastq.gz	7.3 GB
EGAF00009042170	fastq.gz	4.1 GB
EGAF00009042171	cram	6.9 GB
EGAF00009042172	cram	2.4 GB
EGAF00009042173	cram	7.9 GB
EGAF00009042174	fastq.gz	10.4 GB
EGAF00009042175	cram	6.4 GB
EGAF00009042176	cram	5.2 GB
EGAF00009042177	fastq.gz	8.5 GB
EGAF00009042178	fastq.gz	4.8 GB
EGAF00009042179	cram	4.6 GB
EGAF00009042180	fastq.gz	6.0 GB
EGAF00009042181	fastq.gz	3.8 GB
EGAF00009042182	fastq.gz	3.8 GB
EGAF00009042183	fastq.gz	8.5 GB
EGAF00009042184	cram	6.8 GB
EGAF00009042185	fastq.gz	4.4 GB
EGAF00009042186	cram	8.8 GB
EGAF00009042187	fastq.gz	5.4 GB
EGAF00009042188	fastq.gz	4.2 GB
EGAF00009042189	cram	5.5 GB
EGAF00009042190	cram	4.5 GB
EGAF00009042191	cram	5.5 GB
EGAF00009042193	fastq.gz	4.2 GB
EGAF00009042194	fastq.gz	4.1 GB
EGAF00009042195	cram	5.6 GB
EGAF00009042196	fastq.gz	4.0 GB
EGAF00009042197	cram	4.7 GB
EGAF00009042198	fastq.gz	7.9 GB
EGAF00009042199	fastq.gz	4.2 GB
EGAF00009042200	cram	5.1 GB
EGAF00009042201	fastq.gz	3.3 GB
EGAF00009042202	fastq.gz	4.1 GB
EGAF00009042203	fastq.gz	4.8 GB
EGAF00009042204	fastq.gz	3.9 GB
EGAF00009042205	fastq.gz	4.3 GB
EGAF00009042206	cram	5.4 GB
EGAF00009042207	fastq.gz	3.8 GB
EGAF00009042208	fastq.gz	6.1 GB
EGAF00009042209	fastq.gz	5.1 GB
EGAF00009042210	fastq.gz	4.3 GB
EGAF00009042211	fastq.gz	4.1 GB
EGAF00009042212	fastq.gz	3.9 GB
EGAF00009042213	fastq.gz	4.0 GB
EGAF00009042214	cram	3.1 GB
EGAF00009042215	cram	11.1 GB
EGAF00009042216	cram	5.1 GB
EGAF00009042217	fastq.gz	4.2 GB
EGAF00009042218	fastq.gz	4.2 GB
EGAF00009042220	fastq.gz	5.3 GB
EGAF00009042221	fastq.gz	4.0 GB
EGAF00009042222	cram	5.4 GB
EGAF00009042223	fastq.gz	3.3 GB
EGAF00009042224	cram	5.4 GB
EGAF00009042225	fastq.gz	3.4 GB
EGAF00009042226	fastq.gz	4.9 GB
EGAF00009042227	fastq.gz	5.3 GB
EGAF00009042228	fastq.gz	4.0 GB
EGAF00009042230	fastq.gz	9.0 GB
EGAF00009042231	fastq.gz	28.3 GB
EGAF00009042233	fastq.gz	4.0 GB
EGAF00009042234	cram	5.6 GB
EGAF00009042235	cram	6.1 GB
EGAF00009042236	cram	5.4 GB
EGAF00009042237	fastq.gz	5.0 GB
EGAF00009042238	fastq.gz	4.2 GB
EGAF00009042239	fastq.gz	3.8 GB
EGAF00009042240	fastq.gz	8.5 GB
EGAF00009042241	fastq.gz	4.2 GB
EGAF00009042242	cram	3.4 GB
EGAF00009042243	cram	4.4 GB
EGAF00009042244	fastq.gz	8.8 GB
EGAF00009042245	fastq.gz	8.6 GB
EGAF00009042246	fastq.gz	4.4 GB
EGAF00009042247	fastq.gz	4.4 GB
EGAF00009042248	cram	5.8 GB
EGAF00009042249	fastq.gz	4.1 GB
EGAF00009042250	fastq.gz	9.0 GB
EGAF00009042251	fastq.gz	4.1 GB
EGAF00009042252	fastq.gz	5.4 GB
EGAF00009042253	fastq.gz	4.2 GB
EGAF00009042254	fastq.gz	10.6 GB
EGAF00009042255	fastq.gz	4.4 GB
EGAF00009042256	fastq.gz	4.0 GB
EGAF00009042257	cram	21.5 GB
EGAF00009042258	fastq.gz	11.1 GB
EGAF00009042259	cram	6.1 GB
EGAF00009042260	fastq.gz	3.9 GB
EGAF00009042261	fastq.gz	10.9 GB
EGAF00009042262	fastq.gz	4.4 GB
EGAF00009042263	fastq.gz	9.3 GB
EGAF00009042264	fastq.gz	3.7 GB
EGAF00009042265	fastq.gz	4.8 GB
EGAF00009042266	fastq.gz	6.5 GB
EGAF00009042267	fastq.gz	3.6 GB
EGAF00009042268	fastq.gz	4.1 GB
EGAF00009042269	fastq.gz	4.4 GB
EGAF00009042270	cram	17.3 GB
EGAF00009042271	fastq.gz	4.8 GB
EGAF00009042272	fastq.gz	3.9 GB
EGAF00009042273	fastq.gz	4.3 GB
EGAF00009042274	fastq.gz	8.5 GB
EGAF00009042275	fastq.gz	6.5 GB
EGAF00009042276	fastq.gz	7.4 GB
EGAF00009042277	cram	9.0 GB
EGAF00009042278	fastq.gz	10.5 GB
EGAF00009042279	fastq.gz	3.9 GB
EGAF00009042280	fastq.gz	3.9 GB
EGAF00009042281	fastq.gz	4.0 GB
EGAF00009042282	fastq.gz	4.0 GB
EGAF00009042283	fastq.gz	8.4 GB
EGAF00009042284	fastq.gz	3.8 GB
EGAF00009042285	fastq.gz	4.0 GB
EGAF00009042286	fastq.gz	4.2 GB
EGAF00009042287	fastq.gz	3.7 GB
EGAF00009042288	fastq.gz	9.9 GB
EGAF00009042289	fastq.gz	10.2 GB
EGAF00009042290	fastq.gz	4.0 GB
EGAF00009042291	fastq.gz	3.5 GB
EGAF00009042292	fastq.gz	11.0 GB
EGAF00009042293	fastq.gz	4.1 GB
EGAF00009042294	fastq.gz	4.2 GB
EGAF00009042295	fastq.gz	4.5 GB
EGAF00009042296	fastq.gz	6.9 GB
EGAF00009042297	fastq.gz	28.5 GB
EGAF00009042298	fastq.gz	4.0 GB
EGAF00009042299	fastq.gz	4.2 GB
EGAF00009042300	fastq.gz	11.1 GB
EGAF00009042301	cram	7.3 GB
EGAF00009042302	fastq.gz	4.0 GB
EGAF00009042303	fastq.gz	4.0 GB
EGAF00009042304	fastq.gz	4.0 GB
EGAF00009042305	fastq.gz	3.7 GB
EGAF00009042306	fastq.gz	4.1 GB
EGAF00009042307	fastq.gz	10.2 GB
EGAF00009042308	fastq.gz	4.0 GB
EGAF00009042309	fastq.gz	5.6 GB
EGAF00009042310	fastq.gz	4.6 GB
EGAF00009042311	fastq.gz	4.2 GB
EGAF00009042312	fastq.gz	5.7 GB
251 Files (1.5 TB)

RNA-Seq dataset of Targeting the dark proteome to expand the lineage-retained antigen landscape in neuroblastoma

DUO:0000007 version: 2021-02-23

disease specific research

Data Access Agreement of data controlled by the Data Access Commitee of the Princess Maxima Center for Pediatric Oncology

DUO:0000007
version: 2021-02-23