About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA-Seq dataset of Targeting the dark proteome to expand the lineage-retained antigen landscape in neuroblastoma

This dataset contains bulk RNA-sequencing data generated to enable custom transcriptome assembly and to provide expression context for matched ribosome profiling in the discovery of lineage-retained neuroblastoma tumor antigens. RNA was sequenced from 183 neuroblastoma samples comprising cell lines, patient-derived tumor organoids, and primary patient tumors spanning the adrenergic (ADRN) and mesenchymal (MES) lineage states, with 101 samples prepared as rRNA-depleted (total RNA) libraries and 82 samples prepared as poly(A)-selected libraries. Libraries were sequenced paired-end (2x150 bp) on the Illumina NovaSeq 6000 platform. Raw data are provided as paired-end fastq.gz files.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO_0006517

Data Access Agreement of data controlled by the Data Access Commitee of the Princess Maxima Center for Pediatric Oncology

The Princess Maxima Center for pediatric oncology default access policy to enable re-production of research and re-use of data for scientific purposes. Please contact the DAC (EGAC00001001864) for the most up to date policies.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005312 Other
EGAS00001006723 Other
EGAS00001007099 Other
EGAS00001007160 Other
EGAS00001008445 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005299831 cram 8.0 GB
EGAF00005299838 cram 8.2 GB
EGAF00005299866 cram 7.8 GB
EGAF00005299875 cram 14.9 GB
EGAF00005299887 cram 5.8 GB
EGAF00005299934 cram 5.9 GB
EGAF00005488180 cram 7.1 GB
EGAF00005488206 cram 7.1 GB
EGAF00005488216 cram 7.7 GB
EGAF00007514268 cram 6.5 GB
EGAF00007514269 cram 4.2 GB
EGAF00007514270 cram 5.6 GB
EGAF00007514271 cram 4.5 GB
EGAF00007984661 cram 7.1 GB
EGAF00007984751 cram 5.8 GB
EGAF00007984755 cram 5.4 GB
EGAF00007984779 cram 6.1 GB
EGAF00007984791 cram 6.4 GB
EGAF00008033996 cram 5.8 GB
EGAF00009042034 fastq.gz 3.9 GB
EGAF00009042037 fastq.gz 4.0 GB
EGAF00009042043 fastq.gz 5.0 GB
EGAF00009042047 fastq.gz 3.4 GB
EGAF00009042048 fastq.gz 3.9 GB
EGAF00009042049 fastq.gz 4.3 GB
EGAF00009042050 fastq.gz 4.4 GB
EGAF00009042052 fastq.gz 4.4 GB
EGAF00009042053 fastq.gz 3.7 GB
EGAF00009042054 fastq.gz 5.0 GB
EGAF00009042056 fastq.gz 5.8 GB
EGAF00009042057 fastq.gz 4.9 GB
EGAF00009042058 fastq.gz 3.8 GB
EGAF00009042060 fastq.gz 5.5 GB
EGAF00009042061 fastq.gz 4.6 GB
EGAF00009042062 fastq.gz 3.7 GB
EGAF00009042064 fastq.gz 5.7 GB
EGAF00009042065 fastq.gz 3.4 GB
EGAF00009042067 fastq.gz 4.4 GB
EGAF00009042068 fastq.gz 4.6 GB
EGAF00009042071 cram 6.1 GB
EGAF00009042072 fastq.gz 5.7 GB
EGAF00009042073 fastq.gz 4.2 GB
EGAF00009042074 fastq.gz 4.5 GB
EGAF00009042075 fastq.gz 4.9 GB
EGAF00009042078 fastq.gz 4.7 GB
EGAF00009042079 fastq.gz 5.6 GB
EGAF00009042080 fastq.gz 4.9 GB
EGAF00009042081 cram 9.2 GB
EGAF00009042082 fastq.gz 4.4 GB
EGAF00009042084 cram 5.3 GB
EGAF00009042085 fastq.gz 4.2 GB
EGAF00009042086 fastq.gz 5.0 GB
EGAF00009042088 fastq.gz 4.5 GB
EGAF00009042089 fastq.gz 3.7 GB
EGAF00009042090 fastq.gz 4.3 GB
EGAF00009042091 cram 6.1 GB
EGAF00009042092 cram 6.0 GB
EGAF00009042093 cram 5.9 GB
EGAF00009042094 fastq.gz 4.3 GB
EGAF00009042095 fastq.gz 4.3 GB
EGAF00009042096 cram 6.2 GB
EGAF00009042097 fastq.gz 4.1 GB
EGAF00009042098 fastq.gz 4.8 GB
EGAF00009042100 cram 5.3 GB
EGAF00009042101 fastq.gz 3.7 GB
EGAF00009042103 cram 7.7 GB
EGAF00009042104 cram 5.8 GB
EGAF00009042105 fastq.gz 4.9 GB
EGAF00009042106 cram 7.3 GB
EGAF00009042107 fastq.gz 4.8 GB
EGAF00009042108 cram 6.1 GB
EGAF00009042109 fastq.gz 4.7 GB
EGAF00009042110 cram 7.5 GB
EGAF00009042111 fastq.gz 5.6 GB
EGAF00009042112 cram 6.5 GB
EGAF00009042113 cram 5.0 GB
EGAF00009042114 cram 9.4 GB
EGAF00009042115 cram 8.9 GB
EGAF00009042116 cram 4.2 GB
EGAF00009042118 cram 4.9 GB
EGAF00009042121 fastq.gz 4.0 GB
EGAF00009042122 cram 3.3 GB
EGAF00009042123 fastq.gz 5.0 GB
EGAF00009042124 fastq.gz 5.0 GB
EGAF00009042125 fastq.gz 3.7 GB
EGAF00009042126 fastq.gz 4.3 GB
EGAF00009042127 cram 5.2 GB
EGAF00009042128 cram 4.5 GB
EGAF00009042129 cram 6.5 GB
EGAF00009042130 cram 5.7 GB
EGAF00009042131 cram 5.7 GB
EGAF00009042132 cram 6.4 GB
EGAF00009042133 cram 7.7 GB
EGAF00009042134 cram 4.8 GB
EGAF00009042135 cram 6.8 GB
EGAF00009042136 fastq.gz 4.3 GB
EGAF00009042137 cram 8.2 GB
EGAF00009042138 fastq.gz 4.0 GB
EGAF00009042140 fastq.gz 4.0 GB
EGAF00009042141 fastq.gz 8.2 GB
EGAF00009042142 cram 5.7 GB
EGAF00009042143 cram 12.8 GB
EGAF00009042144 fastq.gz 4.1 GB
EGAF00009042145 cram 5.0 GB
EGAF00009042146 cram 7.2 GB
EGAF00009042147 cram 3.8 GB
EGAF00009042149 cram 6.1 GB
EGAF00009042150 cram 4.4 GB
EGAF00009042151 cram 6.3 GB
EGAF00009042152 cram 8.8 GB
EGAF00009042153 cram 7.3 GB
EGAF00009042154 fastq.gz 4.5 GB
EGAF00009042155 cram 7.1 GB
EGAF00009042157 cram 13.9 GB
EGAF00009042159 fastq.gz 6.8 GB
EGAF00009042160 cram 8.1 GB
EGAF00009042161 fastq.gz 4.8 GB
EGAF00009042162 cram 7.7 GB
EGAF00009042163 cram 6.5 GB
EGAF00009042164 cram 6.1 GB
EGAF00009042165 cram 5.0 GB
EGAF00009042166 cram 5.9 GB
EGAF00009042167 cram 5.2 GB
EGAF00009042168 cram 6.7 GB
EGAF00009042169 fastq.gz 7.3 GB
EGAF00009042170 fastq.gz 4.1 GB
EGAF00009042171 cram 6.9 GB
EGAF00009042172 cram 2.4 GB
EGAF00009042173 cram 7.9 GB
EGAF00009042174 fastq.gz 10.4 GB
EGAF00009042175 cram 6.5 GB
EGAF00009042176 cram 5.2 GB
EGAF00009042177 fastq.gz 8.5 GB
EGAF00009042178 fastq.gz 4.8 GB
EGAF00009042179 cram 4.6 GB
EGAF00009042180 fastq.gz 6.0 GB
EGAF00009042181 fastq.gz 3.8 GB
EGAF00009042182 fastq.gz 3.8 GB
EGAF00009042183 fastq.gz 8.5 GB
EGAF00009042184 cram 6.8 GB
EGAF00009042185 fastq.gz 4.4 GB
EGAF00009042186 cram 8.8 GB
EGAF00009042187 fastq.gz 5.4 GB
EGAF00009042188 fastq.gz 4.2 GB
EGAF00009042189 cram 5.5 GB
EGAF00009042190 cram 4.5 GB
EGAF00009042191 cram 5.5 GB
EGAF00009042193 fastq.gz 4.2 GB
EGAF00009042194 fastq.gz 4.1 GB
EGAF00009042195 cram 5.6 GB
EGAF00009042196 fastq.gz 4.0 GB
EGAF00009042197 cram 4.7 GB
EGAF00009042198 fastq.gz 7.9 GB
EGAF00009042199 fastq.gz 4.2 GB
EGAF00009042200 cram 5.1 GB
EGAF00009042201 fastq.gz 3.3 GB
EGAF00009042202 fastq.gz 4.1 GB
EGAF00009042203 fastq.gz 4.8 GB
EGAF00009042204 fastq.gz 3.9 GB
EGAF00009042205 fastq.gz 4.3 GB
EGAF00009042206 cram 5.4 GB
EGAF00009042207 fastq.gz 3.8 GB
EGAF00009042208 fastq.gz 6.1 GB
EGAF00009042209 fastq.gz 5.2 GB
EGAF00009042210 fastq.gz 4.3 GB
EGAF00009042211 fastq.gz 4.1 GB
EGAF00009042212 fastq.gz 3.9 GB
EGAF00009042213 fastq.gz 4.0 GB
EGAF00009042214 cram 3.1 GB
EGAF00009042215 cram 11.1 GB
EGAF00009042216 cram 5.1 GB
EGAF00009042217 fastq.gz 4.2 GB
EGAF00009042218 fastq.gz 4.2 GB
EGAF00009042220 fastq.gz 5.3 GB
EGAF00009042221 fastq.gz 4.0 GB
EGAF00009042222 cram 5.4 GB
EGAF00009042223 fastq.gz 3.3 GB
EGAF00009042224 cram 5.4 GB
EGAF00009042225 fastq.gz 3.5 GB
EGAF00009042226 fastq.gz 4.9 GB
EGAF00009042227 fastq.gz 5.3 GB
EGAF00009042228 fastq.gz 4.0 GB
EGAF00009042230 fastq.gz 9.0 GB
EGAF00009042231 fastq.gz 28.3 GB
EGAF00009042233 fastq.gz 4.0 GB
EGAF00009042234 cram 5.6 GB
EGAF00009042235 cram 6.1 GB
EGAF00009042236 cram 5.4 GB
EGAF00009042237 fastq.gz 5.0 GB
EGAF00009042238 fastq.gz 4.2 GB
EGAF00009042239 fastq.gz 3.8 GB
EGAF00009042240 fastq.gz 8.5 GB
EGAF00009042241 fastq.gz 4.2 GB
EGAF00009042242 cram 3.4 GB
EGAF00009042243 cram 4.4 GB
EGAF00009042244 fastq.gz 8.8 GB
EGAF00009042245 fastq.gz 8.6 GB
EGAF00009042246 fastq.gz 4.4 GB
EGAF00009042247 fastq.gz 4.4 GB
EGAF00009042248 cram 5.8 GB
EGAF00009042249 fastq.gz 4.1 GB
EGAF00009042250 fastq.gz 9.0 GB
EGAF00009042251 fastq.gz 4.1 GB
EGAF00009042252 fastq.gz 5.4 GB
EGAF00009042253 fastq.gz 4.2 GB
EGAF00009042254 fastq.gz 10.6 GB
EGAF00009042255 fastq.gz 4.4 GB
EGAF00009042256 fastq.gz 4.0 GB
EGAF00009042257 cram 21.5 GB
EGAF00009042258 fastq.gz 11.1 GB
EGAF00009042259 cram 6.1 GB
EGAF00009042260 fastq.gz 3.9 GB
EGAF00009042261 fastq.gz 10.9 GB
EGAF00009042262 fastq.gz 4.4 GB
EGAF00009042263 fastq.gz 9.3 GB
EGAF00009042264 fastq.gz 3.7 GB
EGAF00009042265 fastq.gz 4.8 GB
EGAF00009042266 fastq.gz 6.5 GB
EGAF00009042267 fastq.gz 3.6 GB
EGAF00009042268 fastq.gz 4.1 GB
EGAF00009042269 fastq.gz 4.4 GB
EGAF00009042270 cram 17.3 GB
EGAF00009042271 fastq.gz 4.8 GB
EGAF00009042272 fastq.gz 3.9 GB
EGAF00009042273 fastq.gz 4.3 GB
EGAF00009042274 fastq.gz 8.5 GB
EGAF00009042275 fastq.gz 6.5 GB
EGAF00009042276 fastq.gz 7.4 GB
EGAF00009042277 cram 9.0 GB
EGAF00009042278 fastq.gz 10.5 GB
EGAF00009042279 fastq.gz 4.0 GB
EGAF00009042280 fastq.gz 3.9 GB
EGAF00009042281 fastq.gz 4.0 GB
EGAF00009042282 fastq.gz 4.0 GB
EGAF00009042283 fastq.gz 8.4 GB
EGAF00009042284 fastq.gz 3.8 GB
EGAF00009042285 fastq.gz 4.0 GB
EGAF00009042286 fastq.gz 4.2 GB
EGAF00009042287 fastq.gz 3.7 GB
EGAF00009042288 fastq.gz 9.9 GB
EGAF00009042289 fastq.gz 10.2 GB
EGAF00009042290 fastq.gz 4.0 GB
EGAF00009042291 fastq.gz 3.5 GB
EGAF00009042292 fastq.gz 11.0 GB
EGAF00009042293 fastq.gz 4.1 GB
EGAF00009042294 fastq.gz 4.2 GB
EGAF00009042295 fastq.gz 4.5 GB
EGAF00009042296 fastq.gz 6.9 GB
EGAF00009042297 fastq.gz 28.5 GB
EGAF00009042298 fastq.gz 4.0 GB
EGAF00009042299 fastq.gz 4.2 GB
EGAF00009042300 fastq.gz 11.1 GB
EGAF00009042301 cram 7.3 GB
EGAF00009042302 fastq.gz 4.0 GB
EGAF00009042303 fastq.gz 4.0 GB
EGAF00009042304 fastq.gz 4.0 GB
EGAF00009042305 fastq.gz 3.7 GB
EGAF00009042306 fastq.gz 4.1 GB
EGAF00009042307 fastq.gz 10.2 GB
EGAF00009042308 fastq.gz 4.0 GB
EGAF00009042309 fastq.gz 5.6 GB
EGAF00009042310 fastq.gz 4.6 GB
EGAF00009042311 fastq.gz 4.2 GB
EGAF00009042312 fastq.gz 5.7 GB
264 Files (1.6 TB)