RNA-seq dataset of Dynamic APOBEC3A-associated mutagenesis shapes the genomic landscape of ETV6::RUNX1-positive B-cell precursor acute lymphoblastic leukemia
RNA sequencing was performed on Illumina Novaseq 6000 to generate 150 base-pair paired-end reads of 57 ETV6::RUNX1-positive BCP-ALL samples, aiming for 30M unique reads per sample. CRAMs were generated by read mapping to human reference genome hg38 using STAR-Fusion. The CRAMs were used to quantify the reference transcriptome using featureCounts from Rsubread.
- 24/07/2026
- 1 sample
- DAC: EGAC00001001864
- Archive: European Genome-phenome Archive (EGA)
DUO:0000007 version: 2021-02-23
disease specific research
This data use permission indicates that use is allowed provided it is related to the specified disease.
ModifiersMONDO_0006517
Data Access Agreement of data controlled by the Data Access Commitee of the Princess Maxima Center for Pediatric Oncology
The Princess Maxima Center for pediatric oncology default access policy to enable re-production of research and re-use of data for scientific purposes. Please contact the DAC (EGAC00001001864) for the most up to date policies.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001008419 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00009220165 | cram | 5.2 GB |
|
|
| EGAF00009220167 | cram | 5.3 GB |
|
|
| EGAF00009220169 | cram | 6.4 GB |
|
|
| EGAF00009220171 | cram | 5.7 GB |
|
|
| EGAF00009220173 | cram | 8.4 GB |
|
|
| EGAF00009220174 | cram | 6.7 GB |
|
|
| EGAF00009220177 | cram | 5.5 GB |
|
|
| EGAF00009220179 | cram | 6.2 GB |
|
|
| EGAF00009220182 | cram | 5.5 GB |
|
|
| EGAF00009220184 | cram | 6.5 GB |
|
|
| EGAF00009220190 | cram | 7.6 GB |
|
|
| EGAF00009220193 | cram | 6.2 GB |
|
|
| EGAF00009220199 | cram | 3.8 GB |
|
|
| EGAF00009220200 | cram | 8.9 GB |
|
|
| EGAF00009220204 | cram | 3.8 GB |
|
|
| EGAF00009220218 | cram | 5.7 GB |
|
|
| EGAF00009220237 | cram | 3.9 GB |
|
|
| EGAF00009220239 | cram | 6.3 GB |
|
|
| EGAF00009220275 | cram | 7.8 GB |
|
|
| EGAF00009220348 | cram | 4.3 GB |
|
|
| EGAF00009220349 | cram | 4.6 GB |
|
|
| EGAF00009220350 | cram | 3.9 GB |
|
|
| EGAF00009220351 | cram | 5.6 GB |
|
|
| EGAF00009220352 | cram | 5.0 GB |
|
|
| EGAF00009220353 | cram | 8.6 GB |
|
|
| EGAF00009220354 | cram | 7.2 GB |
|
|
| EGAF00009220355 | cram | 8.8 GB |
|
|
| EGAF00009220356 | cram | 7.2 GB |
|
|
| EGAF00009220357 | cram | 7.2 GB |
|
|
| EGAF00009220358 | cram | 8.2 GB |
|
|
| EGAF00009220359 | cram | 6.3 GB |
|
|
| EGAF00009220360 | cram | 8.4 GB |
|
|
| EGAF00009220361 | cram | 6.7 GB |
|
|
| EGAF00009220362 | cram | 4.4 GB |
|
|
| EGAF00009220363 | cram | 5.5 GB |
|
|
| EGAF00009220365 | cram | 4.6 GB |
|
|
| EGAF00009220366 | cram | 5.1 GB |
|
|
| EGAF00009220367 | cram | 9.4 GB |
|
|
| EGAF00009220369 | cram | 5.0 GB |
|
|
| EGAF00009222528 | cram | 4.5 GB |
|
|
| EGAF00009222529 | cram | 4.4 GB |
|
|
| EGAF00009222530 | cram | 6.2 GB |
|
|
| EGAF00009222531 | cram | 5.1 GB |
|
|
| EGAF00009222532 | cram | 6.0 GB |
|
|
| EGAF00009222533 | cram | 5.8 GB |
|
|
| EGAF00009222534 | cram | 5.3 GB |
|
|
| EGAF00009222535 | cram | 9.2 GB |
|
|
| EGAF00009222536 | cram | 8.6 GB |
|
|
| EGAF00009222537 | cram | 7.5 GB |
|
|
| EGAF00009222538 | cram | 9.9 GB |
|
|
| EGAF00009222539 | cram | 4.8 GB |
|
|
| EGAF00009222540 | cram | 6.5 GB |
|
|
| EGAF00009222541 | cram | 8.7 GB |
|
|
| EGAF00009222543 | cram | 5.7 GB |
|
|
| EGAF00009222545 | cram | 5.1 GB |
|
|
| EGAF00009222548 | cram | 8.4 GB |
|
|
| EGAF00009222549 | cram | 5.0 GB |
|
|
| 57 Files (358.2 GB) | ||||