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PanNEN_Methylation

Methylation data of tumors using illumina Infinium MethylationEPIC

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DNA methylation and Genetic data of Pancreatic Neuroendocrine Neoplasms Edit title and description

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the AC Data Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: XXXXX and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Institute of Pathology Charité, Universitätsmedizin Berlin Charitéplatz 1, D-10117 Berlin, Germany 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify AC Data Access Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify AC Data Access Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify AC Data Access Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. AC Data Access Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than AC Data Access Committee .In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for AC Data Access Committee Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY XXXXX intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. XXXXX anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until XX months after these data were first made available on the relevant hosting database, unless XXXXX has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with XXXXX.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005731 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005707507 idat 13.7 MB
EGAF00005707508 idat 13.7 MB
EGAF00005707509 idat 13.7 MB
EGAF00005707510 idat 13.7 MB
EGAF00005707511 idat 13.7 MB
EGAF00005707512 idat 13.7 MB
EGAF00005707513 idat 13.7 MB
EGAF00005707514 idat 13.7 MB
EGAF00005707515 idat 13.7 MB
EGAF00005707516 idat 13.7 MB
EGAF00005707517 idat 13.7 MB
EGAF00005707518 idat 13.7 MB
EGAF00005707519 idat 13.7 MB
EGAF00005707520 idat 13.7 MB
EGAF00005707521 idat 13.7 MB
EGAF00005707522 idat 13.7 MB
EGAF00005707523 idat 13.7 MB
EGAF00005707524 idat 13.7 MB
EGAF00005707525 idat 13.7 MB
EGAF00005707526 idat 13.7 MB
EGAF00005707527 idat 13.7 MB
EGAF00005707528 idat 13.7 MB
EGAF00005707529 idat 13.7 MB
EGAF00005707530 idat 13.7 MB
EGAF00005707531 idat 13.7 MB
EGAF00005707532 idat 13.7 MB
EGAF00005707533 idat 13.7 MB
EGAF00005707534 idat 13.7 MB
EGAF00005707535 idat 13.7 MB
EGAF00005707536 idat 13.7 MB
EGAF00005707537 idat 13.7 MB
EGAF00005707538 idat 13.7 MB
EGAF00005707539 idat 13.7 MB
EGAF00005707540 idat 13.7 MB
EGAF00005707541 idat 13.7 MB
EGAF00005707542 idat 13.7 MB
EGAF00005707543 idat 13.7 MB
EGAF00005707544 idat 13.7 MB
EGAF00005707545 idat 13.7 MB
EGAF00005707546 idat 13.7 MB
EGAF00005707547 idat 13.7 MB
EGAF00005707548 idat 13.7 MB
EGAF00005707549 idat 13.7 MB
EGAF00005707550 idat 13.7 MB
EGAF00005707551 idat 13.7 MB
EGAF00005707552 idat 13.7 MB
EGAF00005707553 idat 13.7 MB
EGAF00005707554 idat 13.7 MB
EGAF00005707555 idat 13.7 MB
EGAF00005707556 idat 13.7 MB
EGAF00005707557 idat 13.7 MB
EGAF00005707558 idat 13.7 MB
EGAF00005707559 idat 13.7 MB
EGAF00005707560 idat 13.7 MB
EGAF00005707561 idat 13.7 MB
EGAF00005707562 idat 13.7 MB
EGAF00005707563 idat 13.7 MB
EGAF00005707564 idat 13.7 MB
EGAF00005707565 idat 13.7 MB
EGAF00005707566 idat 13.7 MB
EGAF00005707567 idat 13.7 MB
EGAF00005707568 idat 13.7 MB
EGAF00005707569 idat 13.7 MB
EGAF00005707570 idat 13.7 MB
EGAF00005707571 idat 13.7 MB
EGAF00005707572 idat 13.7 MB
EGAF00005707573 idat 13.7 MB
EGAF00005707574 idat 13.7 MB
EGAF00005707575 idat 13.7 MB
EGAF00005707576 idat 13.7 MB
EGAF00005707577 idat 13.7 MB
EGAF00005707578 idat 13.7 MB
EGAF00005707579 idat 13.7 MB
EGAF00005707580 idat 13.7 MB
EGAF00005707581 idat 13.7 MB
EGAF00005707582 idat 13.7 MB
EGAF00005707583 idat 13.7 MB
EGAF00005707584 idat 13.7 MB
EGAF00005707585 idat 13.7 MB
EGAF00005707586 idat 13.7 MB
EGAF00005707587 idat 13.7 MB
EGAF00005707588 idat 13.7 MB
EGAF00005707589 idat 13.7 MB
EGAF00005707590 idat 13.7 MB
EGAF00005707591 idat 13.7 MB
EGAF00005707592 idat 13.7 MB
EGAF00005707593 idat 13.7 MB
EGAF00005707594 idat 13.7 MB
EGAF00005707595 idat 13.7 MB
EGAF00005707596 idat 13.7 MB
EGAF00005707597 idat 13.7 MB
EGAF00005707598 idat 13.7 MB
EGAF00005707599 idat 13.7 MB
EGAF00005707600 idat 13.7 MB
EGAF00005707601 idat 13.7 MB
EGAF00005707602 idat 13.7 MB
EGAF00005707603 idat 13.7 MB
EGAF00005707604 idat 13.7 MB
EGAF00005707605 idat 13.7 MB
EGAF00005707606 idat 13.7 MB
EGAF00005707607 idat 13.7 MB
EGAF00005707608 idat 13.7 MB
EGAF00005707609 idat 13.7 MB
EGAF00005707610 idat 13.7 MB
EGAF00005707611 idat 13.7 MB
EGAF00005707612 idat 13.7 MB
EGAF00005707613 idat 13.7 MB
EGAF00005707614 idat 13.7 MB
EGAF00005707615 idat 13.7 MB
EGAF00005707616 idat 13.7 MB
EGAF00005707617 idat 13.7 MB
EGAF00005707618 idat 13.7 MB
EGAF00005707619 idat 13.7 MB
EGAF00005707620 idat 13.7 MB
114 Files (1.6 GB)